Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038196 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 1.0e-41 172.9 83 100.0
Lj3C805G9 Lonicera japonica HOM05D002762 ORTHO05D004643 4.4e-29 131.0 89 74.2
CSS0044156 Camellia sinensis var. sinensis HOM05D002762 ORTHO05D004643 2.0e-26 122.1 89 68.5
Dinv38356 Davidia involucrata HOM05D002762 ORTHO05D008831 1.7e-25 119.0 88 69.3
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 2.5e-24 115.2 92 65.2
RcHm_v2.0_Chr4g0419291 Rosa chinensis HOM05D002762 ORTHO05D004643 2.5e-24 115.2 86 66.3
Atru.chr4.2693 Acer truncatum HOM05D002762 ORTHO05D004643 3.2e-24 114.8 88 65.9
TWI73G1094 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 5.5e-24 114.0 88 64.8
Actinidia40216 Actinidia chinensis HOM05D002762 ORTHO05D004643 9.4e-24 113.2 89 66.3
CANSAT78G1359 Cannabis sativa HOM05D002762 ORTHO05D004643 9.4e-24 113.2 88 67.0
CAN.G1247.4 Capsicum annuum HOM05D002762 ORTHO05D004643 1.2e-23 112.8 88 63.6
Nitab4.5_0002295g0030 Nicotiana tabacum HOM05D002762 ORTHO05D004643 1.2e-23 112.8 90 65.6
Sopen06g019510 Solanum pennellii HOM05D002762 ORTHO05D004643 1.2e-23 112.8 87 65.5
PGSC0003DMG400030790 Solanum tuberosum HOM05D002762 ORTHO05D004643 1.2e-23 112.8 87 65.5
vmacro08247 Vaccinium macrocarpon HOM05D002762 ORTHO05D004643 1.2e-23 112.8 89 64.0
Solyc06g054430.1 Solanum lycopersicum HOM05D002762 ORTHO05D004643 1.6e-23 112.5 87 64.4
Lsat_1_v5_gn_5_47620 Lactuca sativa HOM05D002762 ORTHO05D004643 6.1e-23 110.5 89 64.0
Eucgr.B01185 Eucalyptus grandis HOM05D002762 ORTHO05D004643 8.0e-23 110.2 88 62.5
MD16G1180300 Malus domestica HOM05D002762 ORTHO05D004643 1.0e-22 109.8 86 67.4
Migut.G00244 Erythranthe guttata HOM05D002762 ORTHO05D004643 1.4e-22 109.4 91 60.4
Migut.G00246 Erythranthe guttata HOM05D002762 ORTHO05D004643 1.4e-22 109.4 91 60.4
Gohir.D09G232700 Gossypium hirsutum HOM05D002762 ORTHO05D004643 1.8e-22 109.0 87 65.5
Gorai.006G255600 Gossypium raimondii HOM05D002762 ORTHO05D004643 1.8e-22 109.0 87 65.5
Sc19g0004700 Simmondsia chinensis HOM05D002762 ORTHO05D004643 1.8e-22 109.0 87 63.2
Actinidia23462 Actinidia chinensis HOM05D002762 ORTHO05D004643 2.3e-22 108.6 89 64.0
Cc03_g02820 Coffea canephora HOM05D002762 ORTHO05D004643 2.3e-22 108.6 89 64.0
MD13G1179300 Malus domestica HOM05D002762 ORTHO05D004643 3.0e-22 108.2 86 66.3
PGR031G1661 Punica granatum HOM05D002762 ORTHO05D004643 3.0e-22 108.2 88 62.5
FvH4_4g14060 Fragaria vesca HOM05D002762 ORTHO05D004643 5.2e-22 107.5 85 63.5
FAN12G3553 Fragaria x ananassa HOM05D002762 ORTHO05D004643 5.2e-22 107.5 85 63.5
FAN17G2967 Fragaria x ananassa HOM05D002762 ORTHO05D004643 5.2e-22 107.5 85 63.5
Sed0001779 Sechium edule HOM05D002762 ORTHO05D004643 5.2e-22 107.5 87 63.2
Aa31LG9G1950 Aethionema arabicum HOM05D002762 ORTHO05D004643 8.8e-22 106.7 86 59.3
COL.COLO4_13978 Corchorus olitorius HOM05D002762 ORTHO05D004643 8.8e-22 106.7 87 63.2
Gohir.A09G231600 Gossypium hirsutum HOM05D002762 ORTHO05D004643 8.8e-22 106.7 87 64.4
Prupe.1G147900 Prunus persica HOM05D002762 ORTHO05D004643 8.8e-22 106.7 88 62.5
DCAR_030582 Daucus carota HOM05D002762 ORTHO05D004643 1.1e-21 106.3 88 60.2
TWI09G0048 Tripterygium wilfordii HOM05D002762 ORTHO05D004643 1.5e-21 105.9 88 62.5
HanXRQChr03g0079911 Helianthus annuus HOM05D002762 ORTHO05D004643 2.0e-21 105.5 89 60.7
CARHR222230 Cardamine hirsuta HOM05D002762 ORTHO05D004643 2.6e-21 105.1 94 54.3
FAN22G0648 Fragaria x ananassa HOM05D002762 ORTHO05D004643 2.6e-21 105.1 85 62.4
Duzib151G0782 Durio zibethinus HOM05D002762 ORTHO05D004643 4.4e-21 104.4 87 62.1
Thecc.04G271300 Theobroma cacao HOM05D002762 ORTHO05D004643 4.4e-21 104.4 87 60.9
Haze_01003 Corylus avellana HOM05D002762 ORTHO05D004643 5.7e-21 104.0 88 60.2
ECA240G4644 Erigeron canadensis HOM05D002762 ORTHO05D004643 5.7e-21 104.0 85 63.5
MELO3C021388.2 Cucumis melo HOM05D002762 ORTHO05D004643 7.5e-21 103.6 84 65.5
CsaV3_6G005490 Cucumis sativus L. HOM05D002762 ORTHO05D004643 7.5e-21 103.6 84 65.5
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 9.7e-21 103.2 86 58.1
Duzib052G0700 Durio zibethinus HOM05D002762 ORTHO05D004643 1.7e-20 102.4 87 60.9
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 1.7e-20 102.4 90 60.0
BcaC06g33410 Brassica carinata HOM05D002762 ORTHO05D004643 2.2e-20 102.1 86 57.0
C07p47170 Brassica napus HOM05D002762 ORTHO05D004643 2.2e-20 102.1 86 57.0
BolC7t45238H Brassica oleracea HOM05D002762 ORTHO05D004643 2.2e-20 102.1 86 57.0
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 2.2e-20 102.1 84 64.3
MSTRG.3976 Avicennia marina HOM05D002762 ORTHO05D004643 2.8e-20 101.7 88 62.5
Cfa015545 Carpinus fangiana HOM05D002762 ORTHO05D004643 2.8e-20 101.7 88 59.1
Peaxi162Scf00769g00116 Petunia axillaris HOM05D002762 ORTHO05D004643 2.8e-20 101.7 87 58.6
AL7G40070 Arabidopsis lyrata HOM05D002762 ORTHO05D004643 4.8e-20 100.9 86 54.7
Thhalv10024700m.g Eutrema salsugineum HOM05D002762 ORTHO05D004643 4.8e-20 100.9 86 55.8
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 4.8e-20 100.9 89 57.3
CiPaw.01G157300 Carya illinoinensis HOM05D002762 ORTHO05D004643 6.3e-20 100.5 88 59.1
GSVIVG01017859001 Vitis vinifera HOM05D002762 ORTHO05D004643 6.3e-20 100.5 88 55.7
AT4G15475 Arabidopsis thaliana HOM05D002762 ORTHO05D004643 8.2e-20 100.1 86 54.7
arahy.Tifrunner.gnm1.ann1.6S26PP Arachis hypogaea HOM05D002762 ORTHO05D004643 8.2e-20 100.1 87 60.9
arahy.Tifrunner.gnm1.ann1.Q6K1JG Arachis hypogaea HOM05D002762 ORTHO05D004643 8.2e-20 100.1 87 60.9
Rhsim04G0212100 Rhododendron simsii HOM05D002762 ORTHO05D004643 8.2e-20 100.1 89 60.7
SalBow2G0360 Salvia bowleyana HOM05D002762 ORTHO05D004643 1.1e-19 99.8 88 58.0
SalBow2G3267 Salvia bowleyana HOM05D002762 ORTHO05D004643 1.1e-19 99.8 88 58.0
BcaC06g32936 Brassica carinata HOM05D002762 ORTHO05D004643 1.4e-19 99.4 86 58.1
QL06p006068 Quercus lobata HOM05D002762 ORTHO05D004643 1.4e-19 99.4 90 58.9
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 1.4e-19 99.4 86 57.0
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 1.8e-19 99.0 86 57.0
HanXRQChr08g0226481 Helianthus annuus HOM05D002762 ORTHO05D004643 2.4e-19 98.6 86 59.3
Carub.0007s2643 Capsella rubella HOM05D002762 ORTHO05D004643 4.1e-19 97.8 86 53.5
Hma1.2p1_0511F.1_g169210 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 5.3e-19 97.4 90 57.8
A03p49130 Brassica napus HOM05D002762 ORTHO05D004643 7.0e-19 97.1 83 56.6
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 9.1e-19 96.7 88 56.8
Hma1.2p1_2025F.1_g311500 Hydrangea macrophylla HOM05D002762 ORTHO05D004643 9.1e-19 96.7 86 59.3
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 9.1e-19 96.7 88 59.1
Medtr2g021030 Medicago truncatula HOM05D002762 ORTHO05D004643 1.2e-18 96.3 88 58.0
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 3.5e-18 94.7 89 55.1
VMungo0540G1770 Vigna mungo HOM05D002762 ORTHO05D004643 3.5e-18 94.7 89 55.1
TAR362G1268 Trochodendron aralioides HOM05D002762 ORTHO05D004643 5.9e-18 94.0 89 57.3
TPR.G18042 Trifolium pratense HOM05D002762 ORTHO05D004643 7.7e-18 93.6 88 56.8
Cpa.g.c35915 Carica papaya HOM05D002762 ORTHO05D004643 1.3e-17 92.8 83 55.4
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 3.8e-17 91.3 82 56.1
arahy.Tifrunner.gnm1.ann1.L75CTN Arachis hypogaea HOM05D002762 ORTHO05D004643 5.0e-17 90.9 92 51.1
PSO170G0016 Papaver somniferum HOM05D002762 ORTHO05D004643 5.0e-17 90.9 89 51.7
Lj6g0020038 Lotus japonicus HOM05D002762 ORTHO05D004643 1.1e-16 89.7 87 50.6
ATR0626G340 Amborella trichopoda HOM05D002762 ORTHO05D004643 1.5e-16 89.4 89 51.7
Glyma.13G211600 Glycine max HOM05D002762 ORTHO05D004643 1.9e-16 89.0 86 53.5
PSO302G0133 Papaver somniferum HOM05D002762 ORTHO05D004643 1.9e-16 89.0 89 50.6
HanXRQChr11g0325861 Helianthus annuus HOM05D002762 ORTHO05D004643 2.5e-16 88.6 86 51.2
arahy.Tifrunner.gnm1.ann1.EJ0XN1 Arachis hypogaea HOM05D002762 ORTHO05D004643 3.2e-16 88.2 85 54.1
Glyma.17G019800 Glycine max HOM05D002762 ORTHO05D004643 3.2e-16 88.2 82 54.9
Lalb_Chr20g0118281 Lupinus albus HOM05D002762 ORTHO05D004643 9.4e-16 86.7 86 52.3
MBI19_g20287_MAGBIO Magnolia biondii HOM05D002762 ORTHO05D004643 1.6e-15 85.9 87 55.2
SGA_v2.0_scaffold237G43847 Striga asiatica HOM05D002762 ORTHO05D004643 1.6e-15 85.9 83 53.0
Aqoxy2G03201 Aquilegia oxysepala HOM05D002762 ORTHO05D004643 8.0e-15 83.6 87 50.6
VMungo1215G0792 Vigna mungo HOM05D002762 ORTHO05D004643 1.4e-14 82.8 82 52.4
HanXRQChr11g0325851 Helianthus annuus HOM05D002762 ORTHO05D004643 2.3e-14 82.0 91 48.4
CDE05G1517 Ceratophyllum demersum HOM05D002762 ORTHO05D004643 3.0e-14 81.6 84 56.0
HPP92_016898 Vanilla planifolia HOM05D000144 ORTHO05D004643 1.9e-08 62.4 85 43.5
SMO228G0132 Selaginella moellendorffii HOM05D002762 ORTHO05D004643 2.5e-08 62.0 85 38.8
Zm00001eb115300 Zea mays HOM05D002762 ORTHO05D004643 2.5e-08 62.0 86 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2600 Anthoceros agrestis HOM05D002762 ORTHO05D004643 1.6e-07 59.3 88 38.6
Os11g0641200 Oryza sativa ssp. japonica HOM05D002762 ORTHO05D004643 6.8e-06 53.9 87 36.8


User provided reference genes

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