Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 5.3e-221 771.5 686 100.0
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.1e-189 667.5 514 94.4
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 2.3e-139 500.4 712 75.6
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 8.1e-121 438.7 603 81.1
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 1.9e-114 417.5 696 71.8
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 3.1e-112 410.2 418 79.7
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 5.2e-112 409.5 597 79.4
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 2.6e-111 407.1 613 72.8
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 3.9e-107 393.3 593 78.9
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.1e-106 391.7 608 77.6
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 1.9e-106 391.0 592 78.9
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 8.1e-105 385.6 593 78.2
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.4e-104 384.0 594 76.9
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 5.3e-104 382.9 597 77.4
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 9.0e-104 382.1 593 77.1
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 9.0e-104 382.1 593 78.1
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 9.9e-103 378.6 601 77.4
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.9e-102 377.1 604 75.2
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 3.8e-102 376.7 604 75.2
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 6.4e-102 375.9 596 77.5
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.1e-101 375.2 604 75.2
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 5.4e-101 372.9 592 76.5
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 7.1e-101 372.5 616 74.5
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 2.1e-100 370.9 702 69.9
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 2.7e-100 370.5 277 67.9
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 6.0e-100 369.4 596 75.8
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.0e-99 368.6 622 74.4
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.3e-99 368.2 607 71.0
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 3.9e-99 366.7 408 77.9
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 6.7e-99 365.9 613 74.4
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 6.7e-99 365.9 630 72.5
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 8.7e-99 365.5 594 76.6
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 2.5e-98 364.0 593 76.6
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 5.6e-98 362.8 549 79.6
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 4.8e-97 359.8 597 73.5
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 4.8e-97 359.8 599 65.1
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.1e-96 358.6 602 73.9
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.4e-96 358.2 591 76.3
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.8e-96 357.8 625 72.2
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 4.0e-96 356.7 625 72.2
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.2e-95 355.1 596 75.3
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.5e-95 354.8 617 72.6
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 1.5e-95 354.8 626 68.7
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 3.4e-95 353.6 519 83.8
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 2.9e-94 350.5 601 74.4
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 4.9e-94 349.7 305 60.7
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 6.4e-94 349.4 621 72.0
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 8.4e-94 349.0 620 72.1
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.1e-93 348.6 279 65.2
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.1e-93 348.6 600 73.7
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.9e-93 347.8 620 71.9
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 3.5e-92 343.6 412 73.3
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 1.8e-91 341.3 595 70.6
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 3.9e-91 340.1 605 72.6
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 8.7e-91 339.0 272 63.2
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 1.5e-90 338.2 602 72.8
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 2.1e-89 334.3 608 71.1
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 6.2e-89 332.8 602 72.9
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 4.5e-87 326.6 598 73.4
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 5.8e-87 326.2 623 64.7
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 1.3e-86 325.1 601 72.2
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.3e-86 325.1 619 58.3
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 3.8e-86 323.6 289 56.7
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 4.9e-86 323.2 299 57.5
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.1e-85 322.0 602 71.4
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 1.1e-85 322.0 279 58.1
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.7e-84 317.4 306 54.6
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 3.5e-84 317.0 283 59.0
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 4.6e-84 316.6 599 71.6
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 6.0e-84 316.2 592 72.1
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 6.0e-84 316.2 274 60.9
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.0e-83 315.5 296 58.4
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.9e-82 311.2 622 70.1
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 4.3e-82 310.1 618 68.8
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 7.4e-82 309.3 273 57.5
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.3e-81 308.5 598 71.7
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.3e-81 308.5 595 72.1
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 1.6e-81 308.1 223 68.2
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.6e-81 308.1 593 71.0
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 2.2e-81 307.8 626 68.5
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 3.7e-81 307.0 578 66.6
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 1.4e-80 305.1 439 57.4
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 4.5e-79 300.1 298 56.0
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 2.2e-78 297.7 464 63.1
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.8e-78 297.0 386 73.6
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 2.5e-77 294.3 615 64.4
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 3.2e-77 293.9 593 65.6
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 4.2e-77 293.5 592 65.2
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 7.2e-77 292.7 593 65.4
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 9.4e-77 292.4 593 65.9
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 2.1e-76 291.2 275 52.7
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 2.7e-76 290.8 593 65.3
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 6.1e-76 289.7 294 52.4
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.3e-75 287.7 275 54.9
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 1.8e-72 278.1 598 69.6
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 4.2e-69 266.9 477 82.4
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 4.2e-53 213.8 130 76.2
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 4.8e-49 200.3 141 66.7
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 3.1e-48 197.6 194 49.5
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 7.0e-48 196.4 158 60.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 2.8e-41 174.5 197 45.2
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 5.5e-37 160.2 237 87.3
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 2.3e-30 138.3 118 56.8
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 5.0e-30 137.1 163 48.5
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 2.0e-26 125.2 192 33.9
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 4.9e-25 120.6 198 31.8
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 4.0e-19 100.9 208 29.8
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 4.6e-15 87.4 51 80.4
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 7.8e-15 86.7 49 85.7
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 3.0e-14 84.7 51 78.4
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.3e-13 80.9 49 77.6
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 7.3e-13 80.1 82 48.8
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.1e-08 66.2 39 82.1
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 2.4e-08 65.1 217 25.3
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 2.7e-07 61.6 110 31.8
Gohir.D12G193200 Gossypium hirsutum HOM05D000001 ORTHO05D000003 3.5e-07 61.2 121 31.4
PGR004G0301 Punica granatum HOM05D000001 ORTHO05D000003 3.5e-07 61.2 126 30.2
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 6.0e-07 60.5 178 23.0
Aa31LG3G7460 Aethionema arabicum HOM05D000001 ORTHO05D009862 7.8e-07 60.1 123 32.5
Aa31LG8G12930 Aethionema arabicum HOM05D003056 ORTHO05D003422 7.8e-07 60.1 121 28.1
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 7.8e-07 60.1 35 80.0
Gohir.D12G196300 Gossypium hirsutum HOM05D000001 ORTHO05D009862 1.7e-06 58.9 102 35.3
MD05G1179700 Malus domestica HOM05D000001 ORTHO05D000003 1.7e-06 58.9 122 32.0
COL.COLO4_37265 Corchorus olitorius HOM05D000001 ORTHO05D009862 2.3e-06 58.5 99 34.3
Gorai.008G210900 Gossypium raimondii HOM05D000001 ORTHO05D009862 2.3e-06 58.5 102 35.3
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 3.0e-06 58.2 116 29.3
Potri.012G109300 Populus trichocarpa HOM05D000001 ORTHO05D009862 3.0e-06 58.2 96 38.5
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 3.9e-06 57.8 107 29.0
Sc12g0006230 Simmondsia chinensis HOM05D000001 ORTHO05D012157 3.9e-06 57.8 122 28.7
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 5.1e-06 57.4 127 25.2
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 5.1e-06 57.4 169 23.7
FAN05G5451 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.1e-06 57.4 121 30.6
PGR044G2670 Punica granatum HOM05D000001 ORTHO05D009862 5.1e-06 57.4 108 36.1
QL01p032090 Quercus lobata HOM05D000001 ORTHO05D000003 5.1e-06 57.4 122 30.3
TPR.G32181 Trifolium pratense HOM05D000001 ORTHO05D000003 5.1e-06 57.4 124 27.4
TWI14G1162 Tripterygium wilfordii HOM05D000001 ORTHO05D009862 5.1e-06 57.4 108 32.4
Manes.14G044100 Manihot esculenta HOM05D000001 ORTHO05D009862 6.6e-06 57.0 102 35.3
Nn2g12946 Nelumbo nucifera HOM05D000001 ORTHO05D000003 6.6e-06 57.0 140 25.7
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 6.6e-06 57.0 116 27.6
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 6.6e-06 57.0 164 23.2
THA.LOC104811557 Tarenaya hassleriana HOM05D000001 ORTHO05D009862 6.6e-06 57.0 99 34.3
AUR62019299 Chenopodium quinoa HOM05D000001 ORTHO05D000003 8.6e-06 56.6 156 21.2
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 8.6e-06 56.6 163 23.9
Sabra19G0096700 Salix brachista HOM05D000001 ORTHO05D009862 8.6e-06 56.6 96 38.5
Thecc.03G081800 Theobroma cacao HOM05D000001 ORTHO05D012157 8.6e-06 56.6 131 30.5


User provided reference genes

Program Settings