Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.7e-179 630.6 317 100.0
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.5e-166 587.4 317 93.4
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.6e-156 556.2 299 94.6
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.0e-154 549.3 299 93.3
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.8e-147 526.2 302 87.1
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.8e-147 526.2 299 88.0
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.0e-147 525.4 299 88.0
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 4.8e-145 518.1 299 87.6
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 5.4e-144 514.6 299 86.0
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.6e-143 513.1 299 86.0
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.6e-143 513.1 299 86.0
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.0e-143 512.7 299 85.6
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.5e-143 511.9 299 85.3
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 3.5e-143 511.9 299 85.3
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 4.5e-143 511.5 299 85.3
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 4.5e-143 511.5 299 86.0
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.3e-142 510.0 299 85.3
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 3.8e-142 508.4 299 84.9
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 6.5e-142 507.7 299 84.9
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 8.5e-142 507.3 299 84.9
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 8.5e-142 507.3 299 84.6
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.5e-141 506.5 299 84.6
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 1.9e-141 506.1 299 85.6
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 2.5e-141 505.8 299 84.9
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 4.2e-141 505.0 299 83.9
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 5.5e-141 504.6 299 83.9
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 5.5e-141 504.6 299 84.3
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 7.2e-141 504.2 299 83.9
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 7.2e-141 504.2 299 83.3
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 9.4e-141 503.8 299 84.9
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 9.4e-141 503.8 299 83.9
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.2e-140 503.4 299 83.3
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 2.1e-140 502.7 301 85.4
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 2.7e-140 502.3 299 83.3
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 6.1e-140 501.1 299 84.3
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 6.1e-140 501.1 297 84.5
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.0e-139 500.4 306 83.7
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.4e-139 500.0 299 83.3
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.4e-139 500.0 299 84.3
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.8e-139 499.6 299 83.3
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 2.3e-139 499.2 299 83.6
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 2.3e-139 499.2 297 84.5
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 3.0e-139 498.8 299 82.9
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 3.0e-139 498.8 299 82.3
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 3.0e-139 498.8 299 82.9
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 5.2e-139 498.0 299 83.6
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 6.8e-139 497.7 297 83.8
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.0e-138 496.1 299 83.6
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-138 495.4 296 82.8
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 4.4e-138 495.0 299 81.9
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 5.7e-138 494.6 299 83.9
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.3e-137 493.4 297 83.5
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.3e-137 493.4 290 85.2
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.7e-137 493.0 289 84.8
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.7e-137 493.0 299 82.3
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.7e-137 493.0 299 82.6
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.7e-137 493.0 299 82.3
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 2.2e-137 492.7 299 83.3
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.8e-137 492.3 299 82.9
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 4.9e-137 491.5 289 84.4
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 6.3e-137 491.1 299 82.6
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.1e-136 490.3 289 85.1
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.1e-136 490.3 290 84.5
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.1e-136 488.8 299 81.3
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 5.4e-136 488.0 290 83.4
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 5.4e-136 488.0 322 77.0
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 7.0e-136 487.6 289 85.5
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 1.2e-135 486.9 297 82.5
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.0e-135 486.1 289 83.7
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.0e-135 486.1 297 82.8
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 3.5e-135 485.3 297 82.5
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 7.7e-135 484.2 302 79.1
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.3e-134 483.4 289 83.0
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.3e-134 483.4 295 81.7
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 2.3e-134 482.6 297 81.8
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 2.9e-134 482.3 299 81.6
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.9e-134 482.3 299 80.3
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 3.8e-134 481.9 297 81.5
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 5.0e-134 481.5 299 79.9
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 5.0e-134 481.5 291 82.8
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 6.6e-134 481.1 297 80.8
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 8.6e-134 480.7 299 81.3
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.5e-133 479.9 289 83.0
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.5e-133 479.9 297 80.5
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 3.3e-133 478.8 315 77.5
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 3.3e-133 478.8 299 80.3
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 4.3e-133 478.4 290 82.4
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 4.3e-133 478.4 290 82.4
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.3e-133 477.6 291 82.5
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 7.3e-133 477.6 299 78.9
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 9.5e-133 477.2 297 81.8
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.1e-132 476.1 299 80.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.8e-132 475.7 297 80.1
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.6e-132 475.3 299 79.9
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 4.7e-132 474.9 299 79.3
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 6.1e-132 474.6 299 78.9
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.4e-131 473.4 323 74.3
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 1.4e-131 473.4 289 81.0
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.8e-131 473.0 299 79.3
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 3.0e-131 472.2 299 78.9
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 4.0e-131 471.9 297 79.5
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 4.0e-131 471.9 289 81.3
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 6.8e-131 471.1 289 81.7
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 8.9e-131 470.7 289 81.0
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.5e-130 469.9 299 79.3
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 4.4e-130 468.4 299 79.3
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 9.8e-130 467.2 299 77.3
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.3e-129 466.8 289 80.6
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.2e-129 466.1 292 81.2
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.2e-129 466.1 289 81.3
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 4.9e-129 464.9 289 81.0
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 1.8e-128 463.0 289 80.6
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.8e-128 463.0 289 80.6
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 5.4e-128 461.5 302 75.8
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 7.0e-128 461.1 343 69.4
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 1.2e-127 460.3 289 79.9
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 2.7e-127 459.1 290 79.3
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 3.5e-127 458.8 296 75.3
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 8.9e-123 444.1 312 74.7
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.0e-122 443.0 297 75.4
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.9e-121 439.1 300 74.0
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.1e-117 427.2 286 77.3
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 1.5e-117 426.8 297 71.4
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 1.5e-117 426.8 299 69.9
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.3e-115 419.5 257 82.5
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.8e-100 369.4 230 80.9
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 5.4e-96 355.1 297 62.0
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.6e-92 343.6 303 58.7
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 2.4e-88 329.7 297 59.3
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 3.5e-87 325.9 278 59.7
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 2.1e-84 316.6 191 82.2
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 5.1e-78 295.4 191 78.5
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 5.7e-69 265.4 168 79.2
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.7e-68 262.7 302 45.0
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.5e-61 240.0 304 43.4
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.3e-60 237.7 301 42.2
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.8e-54 217.2 140 77.9
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 1.4e-46 191.0 122 78.7
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.1e-43 181.4 186 57.0
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.2e-42 177.9 110 79.1
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 3.5e-34 149.8 90 81.1
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.2e-26 124.8 77 75.3
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.2e-26 124.8 77 75.3
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.2e-26 124.8 77 75.3
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 3.5e-26 123.2 77 75.3
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 5.9e-26 122.5 77 75.3
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 1.3e-25 121.3 77 74.0
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 6.5e-25 119.0 74 74.3
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.6e-23 114.4 274 33.9
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 8.3e-20 102.1 62 77.4
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 8.3e-20 102.1 62 77.4
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.8e-19 100.9 62 75.8
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 3.8e-17 93.2 73 64.4
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.4e-14 84.7 51 78.4
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.9e-14 82.0 40 92.5
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.8e-07 60.5 57 56.1
BcaB03g13286 Brassica carinata HOM05D000974 ORTHO05D091645 8.9e-06 55.5 28 92.9


User provided reference genes

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