Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.0e-72 276.6 133 100.0
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 6.9e-69 263.8 133 96.2
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 2.7e-41 172.2 86 86.0
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 6.1e-41 171.0 86 84.9
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 8.0e-41 170.6 86 84.9
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 8.0e-41 170.6 86 84.9
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 8.0e-41 170.6 86 86.0
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 1.4e-40 169.9 86 86.0
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.4e-40 169.9 86 84.9
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 1.4e-40 169.9 86 86.0
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 1.4e-40 169.9 86 84.9
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.8e-40 169.5 86 83.7
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 1.8e-40 169.5 86 83.7
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.8e-40 169.5 86 84.9
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.3e-40 169.1 86 83.7
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 3.0e-40 168.7 86 84.9
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 3.9e-40 168.3 86 83.7
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 3.9e-40 168.3 86 83.7
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 3.9e-40 168.3 86 84.9
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 5.2e-40 167.9 86 83.7
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 5.2e-40 167.9 86 84.9
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 5.2e-40 167.9 86 83.7
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 8.8e-40 167.2 91 78.0
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 8.8e-40 167.2 86 84.9
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 8.8e-40 167.2 86 82.6
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 8.8e-40 167.2 86 83.7
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.1e-39 166.8 86 83.7
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.1e-39 166.8 86 83.7
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.5e-39 166.4 86 84.9
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 2.0e-39 166.0 86 83.7
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 2.0e-39 166.0 84 84.5
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 2.6e-39 165.6 86 80.2
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.3e-39 165.2 86 82.6
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 3.3e-39 165.2 86 83.7
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 3.3e-39 165.2 86 83.7
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 5.7e-39 164.5 86 80.2
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 5.7e-39 164.5 86 82.6
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 7.4e-39 164.1 86 81.4
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 7.4e-39 164.1 86 82.6
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 9.7e-39 163.7 86 80.2
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.3e-38 163.3 86 81.4
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 1.7e-38 162.9 83 85.5
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 2.2e-38 162.5 86 80.2
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 2.2e-38 162.5 86 81.4
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 2.2e-38 162.5 86 80.2
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.1e-37 160.2 86 82.6
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 1.1e-37 160.2 86 82.6
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 1.4e-37 159.8 86 79.1
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.4e-37 159.8 86 81.4
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.4e-37 159.8 86 80.2
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.4e-37 159.8 86 80.2
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.4e-37 159.8 86 80.2
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.4e-37 159.1 86 79.1
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 2.4e-37 159.1 86 79.1
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 3.1e-37 158.7 86 80.2
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 4.1e-37 158.3 86 80.2
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 4.1e-37 158.3 86 77.9
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 9.1e-37 157.1 86 75.6
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.2e-36 156.8 86 77.9
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.2e-36 156.8 86 79.1
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 1.2e-36 156.8 86 79.1
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 1.6e-36 156.4 86 77.9
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 1.6e-36 156.4 86 79.1
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 2.6e-36 155.6 86 76.7
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 2.6e-36 155.6 86 79.1
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 2.6e-36 155.6 86 77.9
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 2.6e-36 155.6 84 77.4
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 2.6e-36 155.6 84 82.1
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 3.5e-36 155.2 84 76.2
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 3.5e-36 155.2 84 76.2
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 3.5e-36 155.2 86 80.2
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 3.5e-36 155.2 86 80.2
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 3.5e-36 155.2 86 80.2
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 4.5e-36 154.8 86 80.2
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 4.5e-36 154.8 86 79.1
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 5.9e-36 154.5 86 76.7
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 7.7e-36 154.1 86 76.7
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 7.7e-36 154.1 86 75.6
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 7.7e-36 154.1 86 76.7
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.0e-35 153.7 84 77.4
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 1.3e-35 153.3 84 79.8
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.2e-35 152.5 86 77.9
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 2.2e-35 152.5 86 76.7
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 2.2e-35 152.5 86 76.7
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.9e-35 152.1 86 77.9
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 3.8e-35 151.8 83 78.3
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 6.5e-35 151.0 86 76.7
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 6.5e-35 151.0 86 79.1
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 1.1e-34 150.2 86 74.4
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 1.1e-34 150.2 86 74.4
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 1.1e-34 150.2 86 74.4
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 1.1e-34 150.2 86 74.4
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 1.5e-34 149.8 86 74.4
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.9e-34 149.4 86 74.4
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 4.2e-34 148.3 86 76.7
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 5.5e-34 147.9 84 77.4
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 7.2e-34 147.5 86 73.3
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 9.4e-34 147.1 86 74.4
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 1.2e-33 146.7 86 74.4
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 2.1e-33 146.0 79 79.7
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 2.1e-33 146.0 86 73.3
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 3.6e-33 145.2 85 75.3
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 8.0e-33 144.1 84 76.2
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 1.4e-32 143.3 84 75.0
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 3.0e-32 142.1 83 73.5
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 3.0e-32 142.1 86 73.3
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.2e-31 140.2 77 79.2
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 1.5e-31 139.8 87 73.6
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 2.0e-31 139.4 86 74.4
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 2.0e-31 139.4 87 73.6
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 4.8e-30 134.8 86 65.1
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.2e-27 125.9 84 64.3
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 6.5e-27 124.4 86 65.1
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.1e-26 123.6 84 66.7
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.2e-25 120.2 86 67.4
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 1.2e-25 120.2 87 63.2
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.8e-24 116.3 63 79.4
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 3.4e-23 112.1 86 62.8
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 4.4e-23 111.7 63 74.6
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.8e-22 109.0 83 60.2
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 3.7e-22 108.6 61 77.0
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.0e-20 102.8 56 76.8
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 1.3e-19 100.1 92 47.8
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 3.8e-19 98.6 95 49.5
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 8.6e-19 97.4 66 68.2
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 3.0e-16 89.0 71 60.6
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 6.8e-16 87.8 89 46.1
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 5.4e-13 78.2 45 77.8
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 2.5e-10 69.3 49 67.3
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 3.7e-06 55.5 86 38.4


User provided reference genes

Program Settings