Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 0.0e+00 3968.3 2141 100.0
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 0.0e+00 2009.6 2100 59.7
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 0.0e+00 1995.3 2134 59.0
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 0.0e+00 1737.6 2133 54.9
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 0.0e+00 1601.3 1988 52.8
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 0.0e+00 1331.6 2192 45.4
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 0.0e+00 1203.0 2151 43.5
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 0.0e+00 1121.3 2140 43.5
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 0.0e+00 1104.4 2200 41.2
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 0.0e+00 1103.2 2187 42.2
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 3.0e-307 1059.7 2136 41.5
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 5.0e-302 1042.3 2127 41.4
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.5e-301 1040.8 1627 47.1
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 5.3e-288 995.7 2165 40.0
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 5.0e-286 989.2 2105 40.3
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 4.3e-269 932.9 2158 38.6
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 7.1e-256 889.0 2127 38.5
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 6.6e-254 882.5 2107 38.3
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 1.6e-252 877.9 2153 38.6
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 2.1e-252 877.5 2191 38.0
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 8.1e-252 875.5 2228 37.0
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 6.8e-251 872.5 2198 38.2
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 2.0e-250 870.9 2215 35.8
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 2.7e-247 860.5 787 68.9
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 7.3e-245 852.4 2149 37.9
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 8.9e-243 845.5 2140 37.6
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 1.7e-238 831.2 2165 37.6
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 5.6e-237 826.2 1832 39.1
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 4.6e-231 806.6 1962 37.5
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 7.9e-231 805.8 2060 37.3
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 3.5e-223 780.4 2198 35.7
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.0e-222 778.9 2151 35.7
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.8e-222 778.1 2163 35.9
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.4e-219 768.5 1985 36.7
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.3e-212 745.3 1442 41.6
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.7e-212 743.8 1959 37.2
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 1.5e-210 738.4 1239 46.4
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 7.6e-210 736.1 752 64.4
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 4.1e-203 713.8 2042 35.6
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.7e-201 708.4 2089 35.2
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 4.6e-199 700.3 1089 47.4
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.8e-198 698.4 802 58.4
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 6.7e-198 696.4 2145 34.5
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 2.8e-196 691.0 2119 35.0
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 8.5e-193 679.5 1873 36.3
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 1.2e-191 675.6 2183 34.8
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 2.7e-191 674.5 2223 33.6
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 3.3e-189 667.5 2169 34.1
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 1.7e-188 665.2 1966 35.7
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 2.8e-188 664.5 1866 36.1
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 2.4e-187 661.4 1898 35.5
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 4.1e-187 660.6 2120 34.8
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.5e-184 651.4 2180 33.6
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 4.7e-183 647.1 1122 42.1
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 2.0e-181 641.7 2145 33.4
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 4.1e-179 634.0 798 56.0
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 1.1e-176 625.9 2117 34.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 2.7e-175 621.3 1514 38.2
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 6.8e-174 616.7 2083 33.2
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.6e-173 614.8 2367 32.2
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 3.4e-173 614.4 1209 43.6
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 3.4e-173 614.4 2008 33.7
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.7e-172 612.1 1859 34.6
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 1.8e-171 608.6 2174 32.8
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 1.2e-170 605.9 1970 33.4
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 3.8e-169 600.9 1953 33.4
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 2.0e-165 588.6 961 47.8
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 1.7e-164 585.5 2225 32.9
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 1.2e-162 579.3 2193 33.2
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.6e-159 568.9 1914 31.1
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 2.3e-158 565.1 2145 30.8
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 4.4e-157 560.8 1928 32.4
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 4.4e-157 560.8 1855 33.6
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 2.4e-155 555.1 816 49.4
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.2e-154 552.7 1039 43.4
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 3.1e-150 538.1 2020 30.7
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 4.0e-150 537.7 2024 30.6
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 1.5e-149 535.8 1951 32.8
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.9e-144 518.8 1834 31.5
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.3e-144 518.1 503 60.8
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 4.7e-143 514.2 2105 31.1
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.4e-142 512.7 779 45.8
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 2.3e-142 511.9 2291 30.3
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 7.5e-141 506.9 783 50.2
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.1e-139 503.1 829 45.8
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.0e-137 496.5 852 45.7
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 2.3e-137 495.4 503 65.6
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 2.3e-137 495.4 847 48.3
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 4.3e-136 491.1 899 42.9
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 1.8e-134 485.7 899 42.6
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 3.1e-134 485.0 904 43.3
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 6.8e-134 483.8 896 43.5
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 2.0e-133 482.3 845 47.3
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.3e-132 479.6 2218 30.7
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 3.5e-130 471.5 658 46.5
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 2.5e-128 465.3 2105 30.0
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 5.6e-128 464.2 1987 29.0
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 9.9e-125 453.4 1920 28.9
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 1.6e-119 436.0 834 43.8
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 8.1e-119 433.7 954 40.6
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 7.1e-115 420.6 805 44.6
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 4.3e-112 411.4 810 44.7
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.3e-111 409.8 520 56.5
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 6.9e-110 404.1 714 40.6
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 8.4e-108 397.1 760 45.0
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.8e-105 389.4 965 38.3
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.9e-99 369.4 1761 28.2
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 4.6e-98 364.8 843 39.7
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.0e-97 363.6 798 40.4
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 2.4e-86 325.9 588 45.6
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 3.2e-83 315.5 927 35.9
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 9.4e-75 287.3 863 36.5
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.8e-70 273.1 254 58.7
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.4e-70 272.7 601 38.6
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 9.1e-70 270.8 1506 27.8
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.0e-68 267.3 345 54.8
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 4.7e-58 231.9 284 58.8
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 8.3e-55 221.1 971 28.0
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 2.8e-50 206.1 514 42.2
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 2.3e-49 203.0 496 37.3
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 3.5e-45 189.1 794 28.1
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 8.9e-41 174.5 853 31.5
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 7.5e-40 171.4 227 45.4
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 7.0e-38 164.9 144 61.1
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 1.6e-37 163.7 400 36.5
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 1.5e-35 157.1 976 26.8
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.2e-32 147.5 222 42.3
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 3.4e-32 146.0 99 75.8
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 8.6e-28 131.3 217 56.2
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.9e-27 130.2 105 72.4
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.4e-25 124.0 140 52.9
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 5.8e-24 118.6 164 43.9
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.3e-20 107.5 241 36.1
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 5.1e-20 105.5 450 28.2
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.7e-15 90.5 118 48.3
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 1.1e-14 87.8 142 43.0
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.6e-13 84.0 138 42.8
MD08G1160100 Malus domestica HOM05D000237 ORTHO05D006530 1.1e-06 61.2 148 33.8


User provided reference genes

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