Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.4e-116 422.9 204 100.0
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.9e-106 388.7 204 92.6
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.1e-93 345.9 204 83.8
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.3e-90 336.7 209 81.3
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.4e-89 333.2 204 83.8
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.7e-88 328.9 193 86.0
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.7e-88 328.9 193 86.0
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 6.8e-84 314.3 192 83.9
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 1.5e-83 313.2 192 82.8
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 6.6e-79 297.7 192 77.1
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 9.6e-78 293.9 192 76.6
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 2.8e-77 292.4 192 77.1
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 1.4e-76 290.0 199 74.9
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 2.6e-75 285.8 192 74.0
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 5.8e-75 284.6 194 74.7
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 2.2e-74 282.7 196 73.5
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 2.9e-74 282.3 191 74.3
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 8.4e-74 280.8 191 73.3
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 8.4e-74 280.8 193 74.6
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 8.4e-74 280.8 191 74.3
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 1.1e-73 280.4 192 72.4
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 1.9e-73 279.6 198 70.7
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 3.2e-73 278.9 199 69.3
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 3.2e-73 278.9 192 72.9
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 4.2e-73 278.5 192 71.9
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 7.1e-73 277.7 192 73.4
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 9.3e-73 277.3 193 73.1
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 1.6e-72 276.6 192 71.9
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 7.8e-72 274.2 188 73.4
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 1.0e-71 273.9 209 68.4
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 1.0e-71 273.9 202 70.3
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 1.3e-71 273.5 193 73.1
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 1.3e-71 273.5 210 66.2
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 1.7e-71 273.1 192 72.9
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 2.3e-71 272.7 192 71.4
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 3.9e-71 271.9 192 71.9
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 6.6e-71 271.2 200 69.0
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 6.6e-71 271.2 194 71.6
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 8.7e-71 270.8 192 70.8
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 1.5e-70 270.0 192 71.4
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 1.9e-70 269.6 192 70.8
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 2.5e-70 269.2 194 68.0
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 3.3e-70 268.9 192 70.3
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 3.3e-70 268.9 192 70.8
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 5.6e-70 268.1 191 69.6
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 9.6e-70 267.3 192 68.2
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 1.6e-69 266.5 192 68.2
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 1.6e-69 266.5 192 69.8
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 2.1e-69 266.2 192 69.3
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 4.8e-69 265.0 192 69.3
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 4.8e-69 265.0 192 70.8
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 4.8e-69 265.0 197 70.1
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 1.4e-68 263.5 192 69.3
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 1.8e-68 263.1 190 71.1
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 1.8e-68 263.1 190 71.1
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 1.8e-68 263.1 190 71.6
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 1.8e-68 263.1 190 71.1
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 2.4e-68 262.7 209 64.1
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 2.4e-68 262.7 192 70.8
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 3.1e-68 262.3 191 70.2
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 4.0e-68 261.9 191 67.0
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 9.0e-68 260.8 194 69.1
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 1.2e-67 260.4 190 70.5
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 1.2e-67 260.4 186 71.0
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 1.2e-67 260.4 186 71.0
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 1.5e-67 260.0 191 67.5
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 2.0e-67 259.6 191 69.6
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 4.4e-67 258.5 194 68.6
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 5.8e-67 258.1 194 67.5
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 9.9e-67 257.3 192 68.2
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 2.2e-66 256.1 194 67.5
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 2.2e-66 256.1 192 68.8
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 6.4e-66 254.6 194 66.5
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 1.4e-65 253.4 192 68.2
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 1.4e-65 253.4 190 69.5
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 2.4e-65 252.7 194 66.5
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 2.4e-65 252.7 201 65.7
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 4.2e-65 251.9 194 65.5
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 7.1e-65 251.1 191 67.5
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 7.1e-65 251.1 191 67.5
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 7.1e-65 251.1 209 64.1
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 9.3e-65 250.8 192 68.8
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 6.0e-64 248.1 194 67.0
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 7.9e-64 247.7 194 66.5
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 1.3e-63 246.9 194 66.5
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 1.3e-63 246.9 194 66.5
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 1.7e-63 246.5 191 65.4
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 1.5e-62 243.4 188 66.0
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 9.6e-62 240.7 209 61.2
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 1.6e-61 240.0 193 64.2
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 2.8e-61 239.2 200 62.5
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 2.8e-61 239.2 191 62.3
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 1.8e-60 236.5 199 63.3
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 4.0e-60 235.3 193 62.2
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 3.4e-59 232.3 189 61.9
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 1.7e-58 229.9 191 60.2
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 5.5e-57 224.9 161 72.7
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 4.6e-56 221.9 184 62.0
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 3.9e-55 218.8 194 58.8
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 3.7e-53 212.2 191 59.7
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 8.4e-50 201.1 195 54.9
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 8.4e-50 201.1 195 55.4
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 9.6e-46 187.6 202 52.0
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 6.5e-42 174.9 121 68.6
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 8.5e-42 174.5 132 65.9
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 1.4e-41 173.7 139 61.9
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 5.5e-41 171.8 139 61.2
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 1.6e-40 170.2 86 88.4
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 5.3e-36 155.2 186 51.1
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 3.0e-31 139.4 86 69.8
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 1.4e-28 130.6 187 41.2
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.4e-28 130.6 187 42.8
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 4.1e-28 129.0 136 54.4
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 5.9e-27 125.2 84 69.0
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 1.0e-26 124.4 88 77.3
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 3.2e-25 119.4 189 42.3
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 2.2e-13 80.1 102 48.0
Pp3c22_5030 Physcomitrium patens HOM05D000005 ORTHO05D000239 5.5e-09 65.5 95 33.7
Psat7g240480 Pisum sativum HOM05D000029 ORTHO05D037355 6.1e-08 62.0 41 70.7
Pp3c10_21680 Physcomitrium patens HOM05D000005 ORTHO05D000239 1.2e-06 57.8 58 43.1
Pp3c10_21693 Physcomitrium patens HOM05D000005 ORTHO05D000239 1.2e-06 57.8 59 44.1
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 1.5e-06 57.4 37 67.6
Psat7g240520 Pisum sativum HOM05D000029 ORTHO05D037355 5.7e-06 55.5 32 78.1
MCO12G165 Micromonas commoda HOM05D002596 ORTHO05D002851 9.8e-06 54.7 61 41.0


User provided reference genes

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