Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037496 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 5.4e-56 220.7 107 100.0
CSS0016884 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 3.2e-48 194.9 92 98.9
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 2.8e-20 102.1 65 75.4
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.1e-19 100.1 65 73.8
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 4.0e-11 71.6 66 53.0
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 9.0e-11 70.5 65 52.3
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 1.5e-10 69.7 65 52.3
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 2.6e-10 68.9 65 52.3
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 4.5e-10 68.2 65 55.4
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 1.0e-09 67.0 65 56.9
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 1.7e-09 66.2 69 52.2
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 2.2e-09 65.9 65 47.7
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 3.8e-09 65.1 80 46.2
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 6.5e-09 64.3 65 46.2
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 1.1e-08 63.5 65 52.3
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 1.1e-08 63.5 65 47.7
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 1.9e-08 62.8 65 47.7
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 3.2e-08 62.0 60 53.3
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 3.2e-08 62.0 67 50.7
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 3.2e-08 62.0 69 43.5
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 4.2e-08 61.6 66 45.5
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 4.2e-08 61.6 65 47.7
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 7.1e-08 60.8 70 44.3
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 7.1e-08 60.8 65 47.7
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 1.2e-07 60.1 65 47.7
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 1.6e-07 59.7 60 51.7
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 2.1e-07 59.3 60 51.7
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 2.1e-07 59.3 65 46.2
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 2.7e-07 58.9 66 45.5
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 3.5e-07 58.5 65 46.2
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 4.6e-07 58.2 65 43.1
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 4.6e-07 58.2 66 45.5
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 6.0e-07 57.8 66 51.5
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 6.0e-07 57.8 61 52.5
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 6.0e-07 57.8 65 43.1
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 7.9e-07 57.4 60 48.3
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 7.9e-07 57.4 66 42.4
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 7.9e-07 57.4 65 47.7
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 1.0e-06 57.0 65 44.6
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 1.0e-06 57.0 65 44.6
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 1.3e-06 56.6 66 45.5
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 1.3e-06 56.6 72 40.3
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 1.3e-06 56.6 60 46.7
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 1.3e-06 56.6 65 43.1
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 1.8e-06 56.2 65 46.2
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 1.8e-06 56.2 61 50.8
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 1.8e-06 56.2 70 44.3
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 1.8e-06 56.2 65 41.5
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 1.8e-06 56.2 65 46.2
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 2.3e-06 55.8 60 50.0
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 3.0e-06 55.5 70 38.6
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 3.0e-06 55.5 63 44.4
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 3.0e-06 55.5 60 50.0
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 3.0e-06 55.5 65 46.2
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 3.0e-06 55.5 65 43.1
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 3.0e-06 55.5 65 43.1
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 3.9e-06 55.1 67 46.3
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 3.9e-06 55.1 67 46.3
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 3.9e-06 55.1 60 48.3
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 5.1e-06 54.7 66 47.0
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 6.7e-06 54.3 72 38.9
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 8.7e-06 53.9 70 41.4
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 8.7e-06 53.9 70 41.4
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 8.7e-06 53.9 65 41.5
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 8.7e-06 53.9 66 47.0


User provided reference genes

Program Settings