Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 0.0e+00 1126.7 549 100.0
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.4e-264 916.0 550 82.4
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 3.7e-249 864.8 543 77.9
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 7.1e-245 850.5 476 85.9
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 3.0e-243 845.1 501 79.6
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 8.7e-243 843.6 537 76.0
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 5.6e-242 840.9 476 82.8
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 1.4e-240 836.3 500 80.2
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.8e-240 835.9 560 73.2
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 4.0e-240 834.7 551 74.0
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 1.3e-238 829.7 659 66.0
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.9e-237 825.9 570 72.5
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 3.2e-237 825.1 545 73.6
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 4.6e-236 821.2 462 83.1
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 6.0e-236 820.8 465 81.9
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.0e-235 820.1 544 73.9
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 1.0e-235 820.1 550 72.2
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 1.3e-235 819.7 549 72.1
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.8e-235 819.3 465 83.0
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 8.7e-235 817.0 546 73.4
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 1.5e-234 816.2 548 72.1
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 7.4e-234 813.9 545 74.1
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 9.7e-234 813.5 545 72.7
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 9.7e-234 813.5 476 81.7
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 1.3e-233 813.1 465 81.1
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 4.8e-233 811.2 550 72.9
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 8.2e-233 810.4 551 71.7
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 8.2e-233 810.4 542 74.0
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.1e-232 810.1 552 72.3
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 1.4e-232 809.7 543 73.3
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.5e-231 806.2 498 76.7
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 3.4e-231 805.1 533 74.3
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 4.5e-231 804.7 557 70.6
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 5.9e-231 804.3 550 72.2
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 7.7e-231 803.9 543 73.1
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 7.7e-231 803.9 551 72.6
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 1.0e-230 803.5 543 71.8
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.0e-230 803.5 551 72.6
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 3.8e-230 801.6 533 73.9
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 5.0e-230 801.2 545 73.0
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 2.5e-229 798.9 498 79.1
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 5.5e-229 797.7 464 80.2
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 7.2e-229 797.3 552 71.0
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 7.2e-229 797.3 628 65.3
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 7.2e-229 797.3 463 79.7
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 2.1e-228 795.8 549 70.7
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 6.1e-228 794.3 550 69.8
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 7.9e-228 793.9 549 71.8
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 1.0e-227 793.5 550 69.8
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.4e-227 793.1 470 78.7
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 3.0e-227 792.0 462 79.7
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 3.0e-227 792.0 549 71.9
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 3.9e-227 791.6 465 79.8
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 5.1e-227 791.2 470 78.5
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 5.1e-227 791.2 518 74.5
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 1.1e-226 790.0 565 70.1
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 1.9e-226 789.3 529 71.5
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 1.3e-225 786.6 460 80.4
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 6.3e-225 784.3 476 77.9
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 1.8e-224 782.7 532 71.2
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 2.4e-224 782.3 544 70.6
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 5.3e-224 781.2 553 69.3
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 6.9e-224 780.8 472 78.2
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 2.0e-223 779.2 622 64.6
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 7.7e-223 777.3 540 70.6
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 1.0e-222 776.9 555 69.2
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.3e-222 776.5 472 77.8
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 8.5e-222 773.9 544 70.8
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 8.5e-222 773.9 465 77.4
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 3.2e-221 771.9 544 69.3
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 3.2e-221 771.9 532 70.3
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 3.2e-221 771.9 541 68.9
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 2.3e-219 765.8 545 69.4
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 2.0e-218 762.7 465 76.6
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 3.3e-218 761.9 545 69.9
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.8e-217 758.1 544 70.4
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 1.1e-216 756.9 476 75.2
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 1.4e-216 756.5 488 71.5
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 2.0e-215 752.7 509 72.1
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 3.4e-215 751.9 461 76.6
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 3.4e-215 751.9 511 69.1
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 2.9e-214 748.8 472 80.7
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 6.5e-214 747.7 462 74.2
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 1.4e-213 746.5 512 69.1
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 7.2e-213 744.2 462 74.0
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 1.2e-212 743.4 549 66.1
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 1.2e-212 743.4 465 76.8
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 2.1e-212 742.7 495 70.1
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 2.7e-212 742.3 465 73.8
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 6.1e-212 741.1 478 72.8
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.4e-211 740.0 465 73.8
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 6.7e-211 737.6 483 71.4
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.1e-210 736.9 436 78.0
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 2.0e-210 736.1 465 73.8
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.7e-209 731.9 533 69.2
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 6.3e-209 731.1 515 68.5
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.1e-208 730.3 515 68.5
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 3.1e-208 728.8 562 66.0
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 7.0e-208 727.6 421 78.9
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.6e-204 716.5 421 77.7
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 4.0e-203 711.8 554 64.3
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.2e-201 706.1 566 62.4
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 3.7e-201 705.3 458 72.1
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.3e-198 696.8 473 70.6
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 8.5e-198 694.1 439 74.9
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 3.4e-194 682.2 421 76.2
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 1.7e-190 669.8 464 66.4
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 6.6e-190 667.9 462 67.5
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 9.5e-189 664.1 464 67.9
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 8.9e-187 657.5 496 64.1
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 2.8e-185 652.5 464 66.6
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.1e-184 649.0 363 86.2
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 2.3e-182 642.9 462 67.7
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 3.8e-182 642.1 451 67.4
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 7.3e-181 637.9 466 63.1
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.9e-177 625.9 478 63.2
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 2.0e-175 619.8 470 66.0
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 2.7e-175 619.4 454 64.5
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 3.9e-174 615.5 459 64.5
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 2.8e-164 582.8 482 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.1e-155 554.3 474 58.6
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.0e-147 525.8 389 68.6
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 1.1e-144 517.7 355 71.3
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.9e-125 453.8 418 54.3
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 8.4e-121 438.3 502 47.8
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 4.2e-120 436.0 316 68.7
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 1.3e-118 431.0 290 71.7
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 2.3e-118 430.3 254 78.3
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.9e-114 415.6 261 76.2
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 2.0e-101 374.0 330 60.6
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 8.5e-89 332.0 214 69.2
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 4.2e-88 329.7 253 61.3
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 4.0e-86 323.2 268 61.9
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 3.4e-77 293.5 244 57.4
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 2.2e-68 264.2 190 71.6
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 5.4e-59 233.0 144 75.0
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 1.4e-54 218.4 176 58.5
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 6.8e-46 189.5 113 76.1
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 2.6e-45 187.6 182 57.7
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 1.9e-43 181.4 178 56.7
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 2.5e-40 171.0 101 82.2
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 8.9e-38 162.5 152 59.2
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 8.9e-38 162.5 115 69.6
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 2.2e-36 157.9 91 76.9
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 7.3e-24 116.3 115 60.0
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 1.1e-14 85.9 57 61.4
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 3.8e-12 77.4 65 70.8
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 6.5e-12 76.6 60 66.7
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 3.2e-11 74.3 48 77.1
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 3.2e-11 74.3 48 77.1
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 1.3e-09 68.9 56 57.1
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 1.8e-09 68.6 82 52.4
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 1.9e-08 65.1 98 43.9


User provided reference genes

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