Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.8e-254 882.1 439 100.0
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.1e-253 879.4 439 99.8
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 8.3e-220 766.9 439 84.3
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 7.3e-216 753.8 456 83.1
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 3.0e-201 705.3 549 68.9
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 1.2e-199 699.9 439 79.3
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 8.1e-199 697.2 439 77.7
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 1.2e-197 693.3 438 76.9
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 2.0e-197 692.6 425 78.6
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 9.9e-197 690.3 424 79.0
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 2.2e-196 689.1 438 77.4
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 9.2e-195 683.7 423 78.5
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 2.1e-194 682.6 423 77.3
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 2.7e-194 682.2 440 77.5
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 7.8e-194 680.6 440 77.3
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 2.3e-193 679.1 419 79.7
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 3.0e-193 678.7 423 77.8
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 3.0e-193 678.7 438 76.3
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 5.1e-193 677.9 423 76.8
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 6.6e-193 677.6 439 76.3
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 1.9e-192 676.0 423 76.6
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 1.2e-191 673.3 423 76.1
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 3.6e-191 671.8 439 76.1
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 6.8e-190 667.5 452 72.8
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 8.9e-190 667.2 441 75.1
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 2.6e-189 665.6 422 76.5
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 3.8e-188 661.8 419 76.8
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 1.1e-187 660.2 436 74.8
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 7.1e-187 657.5 424 74.3
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 2.1e-186 656.0 426 74.2
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 2.7e-186 655.6 421 75.3
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 6.0e-186 654.4 421 76.5
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 3.0e-185 652.1 422 74.2
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 3.3e-184 648.7 421 75.5
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 5.6e-184 647.9 422 73.2
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 5.6e-184 647.9 426 73.5
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 5.6e-184 647.9 421 75.1
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 7.3e-184 647.5 439 71.3
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 7.3e-184 647.5 439 71.1
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 2.8e-183 645.6 418 75.8
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 1.1e-182 643.7 421 74.1
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 1.1e-182 643.7 419 74.5
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 4.0e-182 641.7 439 72.2
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 4.0e-182 641.7 421 75.1
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 4.0e-182 641.7 421 74.8
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 1.2e-181 640.2 421 72.9
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 2.0e-181 639.4 440 72.3
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 2.0e-181 639.4 431 71.5
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 2.6e-181 639.0 422 74.4
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 9.9e-181 637.1 418 75.6
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 1.3e-180 636.7 431 71.2
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 2.9e-180 635.6 431 71.0
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 3.8e-180 635.2 440 72.0
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 6.4e-180 634.4 431 70.5
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 2.4e-179 632.5 433 71.1
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 6.0e-178 627.9 412 74.3
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 7.8e-178 627.5 449 70.2
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 3.0e-177 625.5 437 70.0
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 3.9e-177 625.2 454 67.6
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 5.1e-177 624.8 421 72.7
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 5.1e-177 624.8 421 72.7
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 8.7e-177 624.0 437 70.0
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 1.1e-176 623.6 425 72.0
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 1.9e-176 622.9 423 71.6
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 5.6e-176 621.3 425 71.5
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 1.3e-175 620.2 439 70.4
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 2.1e-175 619.4 438 70.5
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 2.8e-175 619.0 425 72.0
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 2.8e-175 619.0 425 71.5
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 3.6e-175 618.6 425 72.0
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 4.8e-175 618.2 425 72.2
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 1.1e-174 617.1 436 70.2
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 2.4e-174 615.9 425 70.4
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 9.0e-174 614.0 469 65.5
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 1.5e-173 613.2 427 70.5
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 2.6e-173 612.5 422 71.6
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 4.5e-173 611.7 432 69.0
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 4.5e-173 611.7 432 69.0
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 2.2e-172 609.4 418 70.6
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 8.4e-172 607.4 441 67.6
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 1.4e-171 606.7 422 70.9
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 1.9e-171 606.3 425 70.6
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 2.4e-171 605.9 425 70.8
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 4.2e-171 605.1 420 70.5
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 1.6e-170 603.2 420 69.3
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 1.0e-169 600.5 418 71.3
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 3.9e-169 598.6 439 68.1
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 1.1e-168 597.0 420 69.8
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 4.3e-168 595.1 442 66.5
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 2.8e-167 592.4 421 69.6
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 4.0e-166 588.6 437 66.4
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 6.9e-166 587.8 434 66.6
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 2.6e-165 585.9 420 67.6
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 4.5e-165 585.1 421 68.6
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 4.5e-165 585.1 421 68.4
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.3e-164 583.6 421 68.4
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 4.9e-164 581.6 420 67.9
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 1.1e-158 563.9 432 64.6
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 4.9e-156 555.1 440 60.7
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 1.2e-154 550.4 415 65.8
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 5.7e-152 541.6 423 62.4
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 1.5e-149 533.5 334 78.7
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 1.1e-147 527.3 355 71.8
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 2.7e-146 522.7 430 60.0
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 9.1e-142 507.7 424 60.8
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 6.1e-138 495.0 421 56.3
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 7.4e-136 488.0 423 60.5
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 5.0e-132 475.3 422 55.7
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 7.2e-131 471.5 444 52.0
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 1.2e-130 470.7 308 74.0
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 1.6e-130 470.3 353 68.0
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 1.1e-128 464.2 282 81.2
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 2.4e-126 456.4 430 57.2
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 5.2e-121 438.7 426 50.0
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 1.5e-120 437.2 278 78.4
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 5.5e-115 418.7 423 54.1
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 5.8e-88 328.9 193 82.4
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 3.0e-84 316.6 413 43.1
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 3.0e-76 290.0 257 56.0
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 5.8e-72 275.8 183 76.0
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 3.9e-68 263.1 291 51.5
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 1.3e-58 231.5 137 83.9
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 2.5e-35 154.1 101 67.3
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 1.4e-30 138.3 106 60.4
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 7.2e-30 136.0 93 67.7
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 8.8e-28 129.0 89 66.3
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 1.0e-12 79.0 385 24.4
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 1.5e-11 75.1 41 87.8
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 3.7e-10 70.5 91 44.0


User provided reference genes

Program Settings