Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.3e-117 426.4 222 100.0
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.8e-98 362.8 221 87.8
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.7e-88 329.7 227 76.7
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 9.4e-87 323.9 225 74.7
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 2.3e-85 319.3 203 81.3
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 5.1e-85 318.2 225 74.2
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 6.7e-85 317.8 222 75.7
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 2.6e-84 315.8 222 73.4
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.1e-82 310.5 227 73.6
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.4e-82 310.1 246 68.3
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 7.0e-82 307.8 222 73.0
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 9.1e-82 307.4 226 71.2
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 1.2e-81 307.0 222 72.1
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 2.6e-81 305.8 225 72.0
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 7.7e-81 304.3 225 72.0
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 7.7e-81 304.3 225 72.0
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 2.2e-80 302.8 222 70.7
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 3.8e-80 302.0 222 70.7
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 5.5e-79 298.1 224 69.6
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.5e-79 298.1 232 69.8
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.0e-77 293.9 224 71.4
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 1.8e-77 293.1 216 70.4
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 3.0e-77 292.4 216 69.9
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 6.7e-77 291.2 232 66.4
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.7e-75 286.6 224 68.3
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 7.0e-74 281.2 222 66.7
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.2e-72 276.2 228 65.4
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 1.1e-71 273.9 207 70.0
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.5e-71 273.5 226 65.0
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 5.5e-71 271.6 241 65.6
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 2.7e-70 269.2 228 63.2
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 4.7e-70 268.5 225 65.8
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 6.1e-70 268.1 235 60.9
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 8.0e-70 267.7 226 63.7
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.4e-69 266.9 222 64.4
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.5e-68 263.5 223 65.0
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 1.5e-68 263.5 221 66.5
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 2.6e-68 262.7 221 64.3
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 7.5e-68 261.2 214 63.6
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 6.3e-67 258.1 270 55.2
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 6.3e-67 258.1 219 61.6
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.8e-66 256.5 224 62.9
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 1.6e-65 253.4 222 57.7
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.6e-65 253.4 222 58.1
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 3.5e-65 252.3 185 67.6
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 3.5e-65 252.3 222 62.2
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 4.5e-65 251.9 232 57.3
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 4.5e-65 251.9 212 60.8
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 5.9e-65 251.5 214 61.7
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.0e-64 250.8 225 59.6
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.0e-64 250.8 311 51.4
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 1.3e-64 250.4 225 60.0
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.3e-64 250.4 220 60.9
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 2.9e-64 249.2 230 57.8
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.8e-64 248.8 220 57.3
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 3.8e-64 248.8 222 62.6
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 6.5e-64 248.1 190 67.9
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 6.5e-64 248.1 203 65.0
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.5e-63 246.1 232 57.3
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 4.2e-63 245.4 231 58.4
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 5.5e-63 245.0 222 59.0
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 5.5e-63 245.0 214 59.8
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 7.2e-63 244.6 220 56.4
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 9.5e-63 244.2 232 56.9
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 9.5e-63 244.2 231 57.1
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 9.5e-63 244.2 231 57.6
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.2e-62 243.8 224 58.9
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.2e-62 243.8 230 57.0
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 4.7e-62 241.9 230 58.3
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 1.0e-61 240.7 222 57.2
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.0e-61 240.7 213 58.2
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 1.0e-61 240.7 222 55.9
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.0e-61 240.7 222 60.8
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.4e-61 240.4 204 61.8
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 3.0e-61 239.2 231 56.7
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 4.0e-61 238.8 222 60.4
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 6.8e-61 238.0 222 55.9
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 8.8e-61 237.7 222 57.2
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.4e-60 235.7 237 52.7
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 4.4e-60 235.3 209 57.4
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 7.5e-60 234.6 192 65.1
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 1.3e-59 233.8 222 56.3
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 1.3e-59 233.8 222 56.3
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 1.3e-59 233.8 193 65.3
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 1.7e-59 233.4 211 59.2
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 6.3e-59 231.5 265 53.2
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.8e-58 229.9 199 63.8
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 2.7e-57 226.1 240 53.3
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.0e-56 224.2 230 53.9
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.3e-56 223.8 188 64.4
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.3e-56 223.8 165 72.1
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 2.3e-56 223.0 355 42.0
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 3.8e-56 222.2 216 55.6
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.5e-55 220.3 161 75.2
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.2e-54 217.2 205 61.5
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 6.1e-54 214.9 222 54.1
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 8.0e-54 214.5 177 63.8
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 2.3e-53 213.0 162 69.8
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 6.8e-53 211.5 224 52.7
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 1.2e-52 210.7 219 53.0
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 1.4e-50 203.8 223 49.3
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 5.4e-50 201.8 205 52.7
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.2e-49 200.7 182 57.7
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 2.7e-49 199.5 201 51.7
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.7e-48 196.8 131 73.3
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 3.0e-48 196.1 226 50.4
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.5e-47 193.7 257 45.9
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.9e-47 193.4 209 55.0
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 9.5e-47 191.0 187 52.4
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 3.1e-45 186.0 152 65.8
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 4.4e-44 182.2 155 63.2
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.2e-43 179.9 251 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 4.9e-43 178.7 220 44.5
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 3.0e-40 169.5 114 73.7
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.5e-39 166.4 129 69.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.4e-37 160.6 168 56.5
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 8.9e-37 157.9 178 55.1
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 8.9e-37 157.9 172 56.4
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 7.5e-36 154.8 211 37.9
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.1e-34 149.1 144 55.6
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 3.9e-32 142.5 120 59.2
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 4.0e-29 132.5 244 36.9
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 6.8e-29 131.7 225 39.6
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 8.9e-29 131.3 162 46.9
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 2.9e-27 126.3 165 46.1
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.6e-25 119.0 92 66.3
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 8.1e-22 108.2 100 57.0
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 3.1e-21 106.3 218 37.6
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.5e-20 104.0 212 34.0
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.6e-20 103.2 98 57.1
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 3.8e-19 99.4 99 54.5
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.2e-17 94.4 176 38.6
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.6e-17 94.0 54 83.3
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 3.9e-16 89.4 84 59.5
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 2.5e-15 86.7 199 30.2
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.6e-12 76.6 66 63.6
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 5.8e-12 75.5 213 28.6
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.2e-11 73.6 66 59.1
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 2.4e-10 70.1 85 48.2
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 7.1e-10 68.6 130 36.9
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 6.0e-09 65.5 59 66.1
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 6.7e-08 62.0 154 30.5
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 1.1e-07 61.2 64 51.6
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.3e-06 57.8 63 38.1
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 2.1e-06 57.0 86 40.7
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 6.2e-06 55.5 40 67.5


User provided reference genes

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