Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037288 Camellia sinensis var. sinensis HOM05D000966 ORTHO05D004359 4.6e-256 887.5 475 100.0
Actinidia21275 Actinidia chinensis HOM05D000966 ORTHO05D004359 2.6e-158 562.8 473 68.1
Actinidia15211 Actinidia chinensis HOM05D000966 ORTHO05D004359 1.1e-156 557.4 474 67.9
CSS0042459 Camellia sinensis var. sinensis HOM05D000966 ORTHO05D004359 6.3e-149 531.6 475 67.2
CSS0026263 Camellia sinensis var. sinensis HOM05D000966 ORTHO05D004359 3.9e-138 495.7 292 96.6
Dinv14693 Davidia involucrata HOM05D000966 ORTHO05D004359 2.4e-132 476.5 396 68.4
Cfa018425 Carpinus fangiana HOM05D000966 ORTHO05D004359 2.0e-126 456.8 470 60.2
Haze_17638 Corylus avellana HOM05D000966 ORTHO05D004359 2.3e-122 443.4 484 56.8
Thecc.08G133300 Theobroma cacao HOM05D000966 ORTHO05D004359 2.9e-117 426.4 398 61.1
CiPaw.15G031200 Carya illinoinensis HOM05D000966 ORTHO05D004359 1.9e-116 423.7 440 57.7
Manes.02G168600 Manihot esculenta HOM05D000966 ORTHO05D004359 1.6e-112 410.6 466 54.3
Atru.chr13.1574 Acer truncatum HOM05D000966 ORTHO05D004359 2.4e-111 406.8 395 59.5
CiPaw.16G022600 Carya illinoinensis HOM05D000966 ORTHO05D004359 2.0e-110 403.7 434 56.7
Ciclev10000005m.g Citrus clementina HOM05D000966 ORTHO05D004359 7.1e-108 395.2 444 53.8
TAR625G0972 Trochodendron aralioides HOM05D000966 ORTHO05D004359 1.1e-105 387.9 366 60.9
COL.COLO4_36773 Corchorus olitorius HOM05D000966 ORTHO05D004359 5.6e-105 385.6 416 55.3
Gohir.A02G070700 Gossypium hirsutum HOM05D000966 ORTHO05D004359 8.1e-104 381.7 418 56.0
Gorai.005G087500 Gossypium raimondii HOM05D000966 ORTHO05D004359 1.8e-103 380.6 380 58.7
TAR381G1211 Trochodendron aralioides HOM05D000966 ORTHO05D004359 1.8e-103 380.6 368 59.2
TWI34G1216 Tripterygium wilfordii HOM05D000966 ORTHO05D004359 6.9e-103 378.6 410 55.4
TWI32G0333 Tripterygium wilfordii HOM05D000966 ORTHO05D004359 9.0e-103 378.3 367 57.8
TWI60G1172 Tripterygium wilfordii HOM05D000966 ORTHO05D004359 1.2e-102 377.9 397 56.2
Gohir.D02G077900 Gossypium hirsutum HOM05D000966 ORTHO05D004359 2.0e-102 377.1 433 54.3
Cpa.g.sc26.315 Carica papaya HOM05D000966 ORTHO05D004359 2.6e-102 376.7 458 53.5
MD08G1159600 Malus domestica HOM05D000966 ORTHO05D004359 2.4e-100 370.2 491 48.9
Potri.002G079100 Populus trichocarpa HOM05D000966 ORTHO05D004359 3.2e-100 369.8 395 56.5
GSVIVG01008805001 Vitis vinifera HOM05D000966 ORTHO05D004359 9.3e-100 368.2 418 52.6
Manes.18G082550 Manihot esculenta HOM05D000966 ORTHO05D004359 1.2e-99 367.9 434 53.7
Rhsim06G0088400 Rhododendron simsii HOM05D000966 ORTHO05D004359 1.0e-98 364.8 334 65.3
RcHm_v2.0_Chr6g0296741 Rosa chinensis HOM05D000966 ORTHO05D004359 3.9e-98 362.8 429 53.1
Glyma.04G245400 Glycine max HOM05D000966 ORTHO05D004359 6.7e-98 362.1 413 51.3
Sabra05G0138100 Salix brachista HOM05D000966 ORTHO05D004359 8.7e-98 361.7 473 48.6
ClCG08G006030 Citrullus lanatus HOM05D000966 ORTHO05D004359 1.9e-97 360.5 351 59.5
Potri.005G182100 Populus trichocarpa HOM05D000966 ORTHO05D004359 1.9e-97 360.5 482 49.0
Glyma.06G117700 Glycine max HOM05D000966 ORTHO05D004359 9.6e-97 358.2 414 51.4
CsaV3_6G034050 Cucumis sativus L. HOM05D000966 ORTHO05D004359 2.1e-96 357.1 430 51.6
MELO3C008475.2 Cucumis melo HOM05D000966 ORTHO05D004359 2.8e-96 356.7 423 53.4
VMungo1309G2033 Vigna mungo HOM05D000966 ORTHO05D004359 6.2e-96 355.5 413 51.1
Phvul.009G130100 Phaseolus vulgaris HOM05D000966 ORTHO05D004359 8.1e-96 355.1 413 52.3
Gohir.A05G238000 Gossypium hirsutum HOM05D000966 ORTHO05D004359 2.4e-95 353.6 410 55.1
arahy.Tifrunner.gnm1.ann1.P7B6WW Arachis hypogaea HOM05D000966 ORTHO05D004359 1.3e-93 347.8 401 51.6
Gohir.D05G240000 Gossypium hirsutum HOM05D000966 ORTHO05D004359 1.3e-93 347.8 410 54.4
Gorai.009G248900 Gossypium raimondii HOM05D000966 ORTHO05D004359 1.3e-93 347.8 410 54.4
Sed0004584 Sechium edule HOM05D000966 ORTHO05D004359 1.3e-93 347.8 420 51.4
MD15G1133700 Malus domestica HOM05D000966 ORTHO05D004359 1.7e-93 347.4 486 48.6
Sed0009206 Sechium edule HOM05D000966 ORTHO05D004359 1.7e-93 347.4 358 57.0
FAN15G1688 Fragaria x ananassa HOM05D000966 ORTHO05D004359 2.2e-93 347.1 431 51.7
Ca_16610_v3 Cicer arietinum L. HOM05D000966 ORTHO05D004359 2.9e-93 346.7 408 51.5
Lj1g0026196 Lotus japonicus HOM05D000966 ORTHO05D004359 4.9e-93 345.9 415 50.4
arahy.Tifrunner.gnm1.ann1.Z22D2G Arachis hypogaea HOM05D000966 ORTHO05D004359 8.4e-93 345.1 401 51.1
FAN27G3367 Fragaria x ananassa HOM05D000966 ORTHO05D004359 3.2e-92 343.2 431 51.5
Oeu015303.1 Olea europaea HOM05D000966 ORTHO05D004359 9.3e-92 341.7 343 60.1
DCAR_014368 Daucus carota HOM05D000966 ORTHO05D004359 2.1e-91 340.5 479 47.6
FAN20G2668 Fragaria x ananassa HOM05D000966 ORTHO05D004359 2.1e-91 340.5 431 51.0
FvH4_2g27880 Fragaria vesca HOM05D000966 ORTHO05D004359 4.6e-91 339.3 431 50.6
Hund26773 Selenicereus undatus HOM05D000966 ORTHO05D004359 6.0e-91 339.0 381 53.8
Nn1g08953 Nelumbo nucifera HOM05D000966 ORTHO05D004359 2.3e-90 337.0 348 56.3
Oeu040397.2 Olea europaea HOM05D000966 ORTHO05D004359 1.5e-89 334.3 445 48.3
SalBow7G2771 Salvia bowleyana HOM05D000966 ORTHO05D004359 1.5e-89 334.3 401 52.6
CANSAT25G2222 Cannabis sativa HOM05D000966 ORTHO05D004359 2.5e-89 333.6 428 49.1
Duzib093G1496 Durio zibethinus HOM05D000966 ORTHO05D004359 2.5e-89 333.6 310 60.6
Cc10_g13740 Coffea canephora HOM05D000966 ORTHO05D004359 3.3e-89 333.2 392 53.6
Solyc04g057880.3 Solanum lycopersicum HOM05D000966 ORTHO05D004359 3.3e-89 333.2 434 49.3
FAN24G3136 Fragaria x ananassa HOM05D000966 ORTHO05D004359 5.6e-89 332.4 431 50.1
SalBow7G0355 Salvia bowleyana HOM05D000966 ORTHO05D004359 9.6e-89 331.6 403 52.9
Sopen04g025730 Solanum pennellii HOM05D000966 ORTHO05D004359 1.3e-88 331.3 437 49.4
PGR042G2231 Punica granatum HOM05D000966 ORTHO05D004359 8.2e-88 328.6 316 60.1
QL09p032370 Quercus lobata HOM05D000966 ORTHO05D004359 1.4e-87 327.8 258 68.6
Nn5g28439 Nelumbo nucifera HOM05D000966 ORTHO05D004359 1.8e-87 327.4 361 54.6
Medtr3g088625 Medicago truncatula HOM05D000966 ORTHO05D004359 3.1e-87 326.6 362 53.3
Sc26g0002860 Simmondsia chinensis HOM05D000966 ORTHO05D004359 3.1e-87 326.6 427 49.4
TPR.G21850 Trifolium pratense HOM05D000966 ORTHO05D004359 3.1e-87 326.6 416 49.5
Lalb_Chr11g0066181 Lupinus albus HOM05D000966 ORTHO05D004359 5.3e-87 325.9 384 51.8
Eucgr.F03851 Eucalyptus grandis HOM05D000966 ORTHO05D004359 9.0e-87 325.1 390 52.3
Lalb_Chr08g0241051 Lupinus albus HOM05D000966 ORTHO05D004359 1.2e-86 324.7 402 50.0
Oeu040396.1 Olea europaea HOM05D000966 ORTHO05D004359 2.6e-86 323.6 302 60.6
Duzib041G0231 Durio zibethinus HOM05D000966 ORTHO05D004359 3.4e-86 323.2 419 50.4
MSTRG.1411 Avicennia marina HOM05D000966 ORTHO05D004359 1.3e-85 321.2 376 54.0
AUR62013429 Chenopodium quinoa HOM05D000966 ORTHO05D004359 1.1e-84 318.2 357 54.3
EL10Ac1g01359 Beta vulgaris HOM05D000966 ORTHO05D004359 3.2e-84 316.6 344 55.2
Nitab4.5_0005166g0010 Nicotiana tabacum HOM05D000966 ORTHO05D004359 1.5e-81 307.8 400 51.2
Peaxi162Scf00591g00715 Petunia axillaris HOM05D000966 ORTHO05D004359 1.5e-81 307.8 342 54.4
Nitab4.5_0000418g0030 Nicotiana tabacum HOM05D000966 ORTHO05D004359 1.9e-81 307.4 406 50.7
AUR62007714 Chenopodium quinoa HOM05D000966 ORTHO05D004359 2.5e-81 307.0 353 55.0
Lalb_Chr23g0271181 Lupinus albus HOM05D000966 ORTHO05D004359 4.3e-81 306.2 361 52.1
Migut.N03259 Erythranthe guttata HOM05D000966 ORTHO05D004359 5.7e-81 305.8 410 50.2
PSO017G4997 Papaver somniferum HOM05D000966 ORTHO05D004359 9.7e-81 305.1 401 48.6
Peaxi162Scf00066g00223 Petunia axillaris HOM05D000966 ORTHO05D004359 1.3e-80 304.7 528 41.5
SGA_v2.0_scaffold28G11969 Striga asiatica HOM05D000966 ORTHO05D004359 2.8e-80 303.5 441 47.4
PSO170G5191 Papaver somniferum HOM05D000966 ORTHO05D004359 1.4e-79 301.2 401 48.1
SalBow2G0813 Salvia bowleyana HOM05D000966 ORTHO05D004359 3.1e-79 300.1 429 46.9
Solyc06g059960.4 Solanum lycopersicum HOM05D000966 ORTHO05D004359 4.1e-79 299.7 382 51.6
Sopen06g020060 Solanum pennellii HOM05D000966 ORTHO05D004359 1.5e-78 297.7 382 51.6
Ah.05g169110 Amaranthus hybridus HOM05D000966 ORTHO05D004359 2.0e-78 297.4 313 57.8
CAN.G531.16 Capsicum annuum HOM05D000966 ORTHO05D004359 2.0e-78 297.4 393 49.9
THA.LOC104812082 Tarenaya hassleriana HOM05D000966 ORTHO05D004359 1.7e-77 294.3 397 49.4
MBI03_g13487_MAGBIO Magnolia biondii HOM05D000966 ORTHO05D004359 5.0e-77 292.7 373 49.1
CANSAT56G0447 Cannabis sativa HOM05D000966 ORTHO05D004359 6.5e-77 292.4 395 48.1
Psat5g084600 Pisum sativum HOM05D000966 ORTHO05D004359 2.1e-75 287.3 333 52.6
Oeu026372.2 Olea europaea HOM05D000966 ORTHO05D004359 4.6e-75 286.2 227 66.1
CANSAT64G2451 Cannabis sativa HOM05D000966 ORTHO05D004359 1.1e-73 281.6 395 46.6
unitig_747.g21497 Utricularia gibba HOM05D000966 ORTHO05D004359 4.3e-73 279.6 395 45.8
SGA_v2.0_scaffold25G11140 Striga asiatica HOM05D000966 ORTHO05D004359 7.4e-73 278.9 279 59.9
Psat1g148080 Pisum sativum HOM05D000966 ORTHO05D004359 1.7e-72 277.7 244 62.7
Aa31LG4G7310 Aethionema arabicum HOM05D000966 ORTHO05D004359 6.3e-72 275.8 306 57.5
BcaB05g25036 Brassica carinata HOM05D000966 ORTHO05D004359 9.1e-71 271.9 392 48.5
Thhalv10017998m.g Eutrema salsugineum HOM05D000966 ORTHO05D004359 1.2e-70 271.6 403 48.1
THA.LOC104810214 Tarenaya hassleriana HOM05D000966 ORTHO05D004359 1.5e-70 271.2 433 45.5
COL.COLO4_35487 Corchorus olitorius HOM05D000966 ORTHO05D004359 7.7e-70 268.9 407 45.7
Sp5g32470 Schrenkiella parvula HOM05D000966 ORTHO05D004359 1.3e-69 268.1 395 49.1
unitig_0.g2115 Utricularia gibba HOM05D000966 ORTHO05D004359 2.2e-69 267.3 300 53.0
ATR0584G046 Amborella trichopoda HOM05D000966 ORTHO05D004359 3.8e-69 266.5 350 47.4
Lsat_1_v5_gn_6_110300 Lactuca sativa HOM05D000966 ORTHO05D004359 5.5e-68 262.7 330 51.2
HanXRQChr05g0149781 Helianthus annuus HOM05D000966 ORTHO05D004359 1.2e-67 261.5 372 46.8
Carub.0002s2418 Capsella rubella HOM05D000966 ORTHO05D004359 3.6e-67 260.0 394 47.0
CARHR070780 Cardamine hirsuta HOM05D000966 ORTHO05D004359 6.1e-67 259.2 303 55.1
Aqoxy5G02416 Aquilegia oxysepala HOM05D000966 ORTHO05D004359 2.6e-65 253.8 421 42.3
A07p42840 Brassica napus HOM05D000966 ORTHO05D004359 9.7e-65 251.9 387 47.3
CDE02G1847 Ceratophyllum demersum HOM05D000966 ORTHO05D004359 9.7e-65 251.9 390 43.6
BraA07t31805Z Brassica rapa HOM05D000966 ORTHO05D004359 1.7e-64 251.1 307 53.1
C06p51460 Brassica napus HOM05D000966 ORTHO05D004359 2.2e-64 250.8 377 46.7
BolC6t40164H Brassica oleracea HOM05D000966 ORTHO05D004359 2.2e-64 250.8 377 46.7
BcaC08g47620 Brassica carinata HOM05D000966 ORTHO05D004359 2.8e-64 250.4 377 46.7
CDE08G1614 Ceratophyllum demersum HOM05D000966 ORTHO05D004359 4.8e-64 249.6 311 48.6
AL2G37500 Arabidopsis lyrata HOM05D000966 ORTHO05D004359 6.3e-64 249.2 306 53.9
Hma1.2p1_2565F.1_g324500 Hydrangea macrophylla HOM05D000966 ORTHO05D004359 5.9e-62 242.7 289 52.2
CDE06G2822 Ceratophyllum demersum HOM05D000625 ORTHO05D004359 2.9e-61 240.4 443 38.4
THA.LOC104809635 Tarenaya hassleriana HOM05D000966 ORTHO05D004359 9.4e-60 235.3 440 42.5
AT1G77300 Arabidopsis thaliana HOM05D000966 ORTHO05D004359 1.2e-59 235.0 381 45.1
ECA246G3937 Erigeron canadensis HOM05D000966 ORTHO05D004359 4.7e-59 233.0 325 49.2
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 1.0e-58 231.9 293 48.1
DCAR_016658 Daucus carota HOM05D000966 ORTHO05D004359 6.3e-56 222.6 347 43.8
SEGI_04625 Sequoiadendron giganteum HOM05D000966 ORTHO05D004359 4.1e-55 219.9 297 45.5
SHI09225 Sapria himalayana HOM05D000966 ORTHO05D004359 1.3e-40 171.8 266 45.9
Dinv27269 Davidia involucrata HOM05D000966 ORTHO05D004359 6.3e-40 169.5 174 59.2
Pp3c2_12540 Physcomitrium patens HOM05D000966 ORTHO05D004359 6.3e-40 169.5 269 40.9
Pp3c1_33770 Physcomitrium patens HOM05D000966 ORTHO05D004359 8.6e-37 159.1 165 51.5
THA.LOC104817099 Tarenaya hassleriana HOM05D000966 ORTHO05D004359 1.1e-36 158.7 159 60.4
Nitab4.5_0000317g0220 Nicotiana tabacum HOM05D000966 ORTHO05D004359 1.5e-36 158.3 486 32.5
HPP92_016112 Vanilla planifolia HOM05D000966 ORTHO05D004359 9.8e-33 145.6 403 32.3
Mapoly0192s0005 Marchantia polymorpha HOM05D000966 ORTHO05D004359 2.2e-32 144.4 158 50.0
Nitab4.5_0003978g0030 Nicotiana tabacum HOM05D000966 ORTHO05D004359 6.3e-32 142.9 473 31.3
Os02g0554000 Oryza sativa ssp. japonica HOM05D000966 ORTHO05D004359 6.1e-27 126.3 101 66.3
AagrBONN_evm.TU.Sc2ySwM_228.2240 Anthoceros agrestis HOM05D000966 ORTHO05D004359 1.5e-25 121.7 191 40.8
Zm00001eb243610 Zea mays HOM05D000966 ORTHO05D004359 2.0e-25 121.3 101 66.3
SEGI_09567 Sequoiadendron giganteum HOM05D000966 ORTHO05D004359 5.4e-23 113.2 225 38.2
CBR_g52455 Chara braunii HOM05D000966 ORTHO05D004359 7.0e-23 112.8 174 36.8
SHI09224 Sapria himalayana HOM05D000966 ORTHO05D004359 2.0e-22 111.3 165 41.8
CAN.G716.14 Capsicum annuum HOM05D000966 ORTHO05D004359 2.7e-22 110.9 233 39.5
Actinidia33296 Actinidia chinensis HOM05D000966 ORTHO05D004359 1.5e-20 105.1 95 60.0
QL09p032394 Quercus lobata HOM05D000966 ORTHO05D004359 2.5e-20 104.4 179 43.0
Hma1.2p1_0880F.1_g231810 Hydrangea macrophylla HOM05D000966 ORTHO05D004359 2.4e-15 87.8 130 43.1
PGSC0003DMG402025314 Solanum tuberosum HOM05D000966 ORTHO05D004359 2.1e-11 74.7 133 37.6


User provided reference genes

Program Settings