Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 6.9e-72 273.9 138 100.0
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 4.5e-63 244.6 144 86.8
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.7e-62 242.7 147 85.0
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 2.4e-56 222.2 144 79.2
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.0e-55 219.2 144 77.8
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.6e-55 218.8 144 77.8
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.6e-55 218.8 144 77.8
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 5.9e-55 217.6 144 77.1
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 5.9e-55 217.6 144 77.1
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.8e-54 214.9 143 81.1
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 5.0e-54 214.5 143 82.5
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 5.5e-53 211.1 143 79.7
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 7.2e-53 210.7 141 75.2
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.2e-52 209.9 158 69.6
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 2.7e-52 208.8 143 80.4
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.0e-51 206.8 158 69.6
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.4e-51 206.5 158 68.4
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.8e-51 206.1 158 68.4
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.8e-51 206.1 158 69.0
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 2.3e-51 205.7 158 69.0
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.3e-51 205.7 156 69.2
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 3.0e-51 205.3 143 77.6
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 3.0e-51 205.3 158 68.4
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 3.0e-51 205.3 143 79.7
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 5.2e-51 204.5 158 68.4
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 5.2e-51 204.5 157 67.5
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 8.8e-51 203.8 158 69.0
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.1e-50 203.4 158 67.1
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.5e-50 203.0 158 69.6
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.5e-50 203.0 155 70.3
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 2.0e-50 202.6 155 68.4
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.0e-50 202.6 158 67.7
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 2.6e-50 202.2 155 68.4
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 5.7e-50 201.1 158 67.1
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 9.7e-50 200.3 142 74.6
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 9.7e-50 200.3 158 67.7
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.3e-49 199.9 155 67.7
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 1.7e-49 199.5 158 67.1
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 4.8e-49 198.0 156 68.6
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 4.8e-49 198.0 155 67.1
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.8e-48 196.1 158 65.8
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 5.3e-48 194.5 158 65.2
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 5.3e-48 194.5 154 68.8
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 9.1e-48 193.7 154 67.5
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.6e-47 193.0 157 64.3
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 2.0e-47 192.6 158 67.1
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 5.9e-47 191.0 156 66.7
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.0e-46 190.3 159 64.8
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.3e-46 189.9 154 66.2
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.7e-46 189.5 155 66.5
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.7e-46 189.5 144 70.1
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.2e-46 189.1 155 66.5
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.2e-46 189.1 156 66.0
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.2e-46 189.1 156 66.0
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.9e-46 188.7 153 68.0
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.9e-46 188.7 156 66.0
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 3.8e-46 188.3 155 66.5
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.5e-46 187.6 156 65.4
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 1.1e-45 186.8 157 64.3
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 1.5e-45 186.4 159 63.5
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.5e-45 186.4 142 72.5
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 3.2e-45 185.3 147 68.0
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 9.4e-45 183.7 155 64.5
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.4e-45 183.7 145 69.0
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 9.4e-45 183.7 160 65.0
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.6e-44 183.0 125 76.8
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 4.7e-44 181.4 155 64.5
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.0e-43 180.3 155 63.9
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.4e-43 179.9 164 59.8
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.8e-43 179.5 153 64.7
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.0e-43 178.7 151 66.2
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 4.0e-43 178.3 161 62.1
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 4.0e-43 178.3 155 65.2
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 8.8e-43 177.2 142 66.9
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 8.8e-43 177.2 151 64.9
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.2e-42 176.8 173 60.1
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.5e-42 176.4 139 69.1
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 1.5e-42 176.4 155 64.5
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.0e-42 176.0 151 63.6
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.6e-42 175.6 155 62.6
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 5.7e-42 174.5 144 65.3
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 3.7e-41 171.8 155 60.6
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 8.3e-41 170.6 155 60.6
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.1e-40 170.2 150 62.7
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.4e-40 169.9 115 77.4
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.4e-40 169.9 200 52.0
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.4e-40 169.9 223 48.0
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.8e-40 169.5 155 60.0
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.8e-40 169.5 165 58.8
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.1e-40 168.7 155 59.4
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.6e-39 166.4 155 61.9
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 3.5e-39 165.2 157 59.9
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 7.7e-39 164.1 93 89.2
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.7e-38 162.9 111 74.8
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 5.0e-38 161.4 155 58.7
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 6.5e-38 161.0 155 60.0
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 6.5e-38 161.0 153 60.1
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 6.5e-38 161.0 93 84.9
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 6.5e-38 161.0 153 60.1
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 8.5e-38 160.6 153 60.8
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.5e-37 159.8 155 58.7
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 3.2e-37 158.7 152 60.5
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 4.2e-37 158.3 155 58.7
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 7.2e-37 157.5 93 83.9
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.2e-36 156.8 104 75.0
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.7e-36 155.6 153 58.2
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 4.7e-36 154.8 157 58.0
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 4.7e-36 154.8 157 58.0
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 6.1e-36 154.5 144 59.7
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 6.1e-36 154.5 144 59.7
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.4e-35 153.3 153 58.2
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.4e-35 153.3 153 58.2
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.4e-35 153.3 153 58.2
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.4e-35 153.3 153 55.6
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.4e-35 153.3 154 57.8
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.4e-35 153.3 152 57.9
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.8e-35 152.9 151 57.6
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.8e-35 152.9 154 57.8
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 2.3e-35 152.5 153 58.2
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.3e-35 152.5 155 53.5
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 4.0e-35 151.8 154 57.8
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 5.2e-35 151.4 153 56.2
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 8.8e-35 150.6 155 54.8
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.2e-34 150.2 154 53.9
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 1.5e-34 149.8 156 53.8
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.0e-34 149.4 153 54.9
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.0e-34 149.4 153 54.9
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 7.5e-34 147.5 183 52.5
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 7.5e-34 147.5 153 54.9
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 9.8e-34 147.1 185 49.2
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.7e-33 146.4 153 54.2
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.2e-33 146.0 153 53.6
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 2.2e-33 146.0 158 51.9
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 4.9e-33 144.8 150 56.7
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 2.4e-32 142.5 111 67.6
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.4e-32 142.5 112 67.0
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 5.4e-32 141.4 140 59.3
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.4e-32 141.4 93 79.6
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 7.0e-32 141.0 107 68.2
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 7.7e-31 137.5 153 52.9
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.0e-30 137.1 270 37.0
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 2.9e-30 135.6 96 70.8
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 5.0e-30 134.8 153 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 6.6e-30 134.4 144 53.5
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 6.6e-30 134.4 141 57.4
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 6.6e-30 134.4 151 49.0
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.1e-29 133.7 116 63.8
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.9e-29 132.9 125 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 4.2e-29 131.7 143 53.1
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 3.6e-28 128.6 103 63.1
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 4.7e-28 128.3 141 53.2
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 6.1e-28 127.9 122 57.4
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.0e-27 127.1 109 63.3
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.3e-27 125.9 125 56.0
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 2.3e-27 125.9 101 65.3
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 5.2e-27 124.8 99 64.6
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.4e-26 122.1 93 67.7
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.2e-25 119.4 156 44.9
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 8.3e-25 117.5 129 51.9
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 7.3e-21 104.4 74 71.6
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.2e-20 103.6 155 43.2
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 2.0e-18 96.3 75 62.7
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 7.5e-18 94.4 89 60.7
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.3e-17 93.6 145 46.2
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 6.4e-17 91.3 170 40.6
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.4e-16 90.1 89 58.4
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 1.6e-15 86.7 83 49.4
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.3e-14 83.6 61 67.2
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 2.3e-14 82.8 89 59.6
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 9.5e-13 77.4 41 87.8
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.3e-11 72.8 46 69.6
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.6e-10 69.3 63 54.0
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 9.8e-10 67.4 63 54.0
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.9e-09 65.1 67 47.8
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 6.4e-09 64.7 75 48.0
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 5.4e-08 61.6 55 56.4
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 7.1e-08 61.2 50 62.0
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 7.1e-08 61.2 132 33.3
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.5e-07 58.9 90 42.2


User provided reference genes

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