Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.6e-135 486.1 251 100.0
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 8.4e-92 340.9 181 100.0
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.7e-68 263.5 182 78.6
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 7.2e-67 258.1 182 79.7
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 5.1e-65 251.9 232 60.8
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 4.3e-64 248.8 205 68.3
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 3.7e-63 245.7 183 74.9
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 7.7e-61 238.0 173 74.6
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 2.9e-60 236.1 182 72.5
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 2.9e-60 236.1 173 74.0
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 1.9e-59 233.4 173 72.8
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 2.5e-59 233.0 172 73.8
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 7.2e-59 231.5 172 73.3
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 7.9e-58 228.0 176 72.7
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 1.0e-57 227.6 179 65.9
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 3.9e-57 225.7 187 68.4
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 6.7e-57 224.9 179 65.9
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.1e-56 224.2 187 69.0
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.3e-55 220.7 165 72.1
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.8e-54 216.9 184 65.8
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 1.8e-54 216.9 195 64.6
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.4e-54 216.5 188 64.9
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.5e-53 213.8 177 68.9
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 2.0e-53 213.4 184 67.4
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 2.0e-53 213.4 188 66.0
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.7e-53 211.5 185 66.5
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.3e-52 210.7 185 66.5
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.3e-52 210.7 187 64.7
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 1.3e-52 210.7 286 49.0
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 2.2e-52 209.9 170 66.5
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 5.0e-52 208.8 185 66.5
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 8.5e-52 208.0 181 67.4
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 1.1e-51 207.6 207 58.5
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 1.4e-51 207.2 209 59.8
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.6e-50 203.8 189 65.1
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.6e-50 203.8 185 60.5
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.1e-50 203.4 187 63.1
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 3.6e-50 202.6 214 57.0
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 6.1e-50 201.8 187 64.2
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 7.9e-50 201.4 199 59.8
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.0e-49 201.1 190 62.1
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.0e-49 201.1 187 63.6
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.4e-49 200.7 175 64.6
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.9e-49 199.1 179 63.7
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 5.1e-49 198.7 173 65.9
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 5.1e-49 198.7 194 59.3
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 5.1e-49 198.7 188 64.9
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 5.1e-49 198.7 180 64.4
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.5e-48 197.2 183 63.9
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 7.4e-48 194.9 186 60.2
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.3e-47 194.1 196 61.2
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-47 194.1 186 60.8
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 3.7e-47 192.6 186 60.2
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 6.3e-47 191.8 180 60.6
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.5e-45 186.0 231 50.6
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.7e-44 183.7 171 60.2
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 1.7e-44 183.7 179 61.5
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.2e-44 183.3 171 60.2
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 6.5e-44 181.8 178 61.8
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 8.5e-44 181.4 178 61.8
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 8.5e-44 181.4 186 58.6
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 5.5e-43 178.7 186 56.5
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 9.4e-43 177.9 188 58.0
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.1e-42 176.8 181 60.8
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.1e-42 176.8 184 59.2
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 3.6e-42 176.0 186 59.1
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 3.6e-42 176.0 186 58.1
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 8.0e-42 174.9 182 61.5
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.0e-41 174.5 183 57.9
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.8e-41 173.7 187 59.9
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.8e-41 173.7 187 59.9
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 5.2e-41 172.2 176 59.7
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 6.7e-41 171.8 186 59.1
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 9.7e-40 167.9 180 59.4
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 1.7e-39 167.2 174 57.5
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 4.8e-39 165.6 167 57.5
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 6.3e-39 165.2 185 56.2
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 1.4e-38 164.1 189 56.1
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.8e-38 163.7 188 53.2
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 3.1e-38 162.9 189 54.0
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 4.1e-38 162.5 191 55.0
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 9.1e-38 161.4 189 52.4
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.2e-37 161.0 183 55.2
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 3.5e-37 159.5 173 57.2
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 5.9e-37 158.7 190 53.2
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.3e-36 157.5 213 51.2
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 1.3e-36 157.5 193 54.4
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 5.0e-36 155.6 171 57.9
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 6.5e-36 155.2 163 58.3
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.5e-35 154.1 177 55.9
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.9e-35 153.7 193 49.7
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.9e-35 153.7 171 57.3
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.5e-35 153.3 192 53.1
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 3.2e-35 152.9 164 55.5
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.2e-34 151.0 190 53.2
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 2.7e-34 149.8 209 49.8
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.4e-33 147.5 186 52.2
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 3.0e-33 146.4 186 49.5
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 4.0e-33 146.0 176 51.7
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 4.0e-33 146.0 176 51.7
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 1.5e-32 144.1 178 50.0
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 2.0e-32 143.7 177 53.1
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 2.0e-32 143.7 183 51.4
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 2.2e-31 140.2 182 52.2
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 6.3e-31 138.7 163 55.2
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.1e-30 137.9 175 50.3
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.8e-30 137.1 177 51.4
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 2.4e-30 136.7 182 51.1
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 2.4e-30 136.7 182 51.1
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 2.4e-30 136.7 134 61.2
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 3.1e-30 136.3 201 48.3
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.6e-29 134.0 215 46.5
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 4.5e-29 132.5 174 50.6
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 4.5e-29 132.5 84 82.1
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 9.4e-27 124.8 177 45.8
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 9.4e-27 124.8 177 45.8
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 1.2e-26 124.4 179 48.0
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 1.2e-26 124.4 179 48.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 8.0e-26 121.7 191 47.1
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 8.0e-26 121.7 191 47.1
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 8.0e-26 121.7 191 47.1
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 1.0e-25 121.3 168 48.2
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 1.0e-25 121.3 146 54.8
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 2.3e-25 120.2 190 44.7
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 5.2e-25 119.0 170 45.9
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.7e-21 106.7 272 35.7
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 4.5e-21 105.9 99 61.6
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 2.9e-20 103.2 115 54.8
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 3.8e-20 102.8 111 55.0
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.6e-18 97.4 113 52.2
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.0e-17 94.7 212 36.8
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.8e-17 94.0 167 44.9
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 3.7e-15 86.3 117 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 6.4e-15 85.5 97 52.6
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 7.0e-14 82.0 214 37.4
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 3.5e-13 79.7 67 62.7
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 3.0e-12 76.6 82 61.0
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 1.6e-10 70.9 98 48.0
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 2.3e-09 67.0 39 82.1
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 4.4e-08 62.8 54 64.8
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 4.4e-08 62.8 54 64.8
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 9.8e-08 61.6 83 49.4
CAN.G1352.26 Capsicum annuum HOM05D002196 ORTHO05D011452 1.1e-06 58.2 74 48.6
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 1.4e-06 57.8 82 41.5


User provided reference genes

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