Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037116 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 4.3e-144 514.6 253 100.0
CSS0002423 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.8e-143 511.9 253 99.6
CSS0019957 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.2e-133 479.9 253 94.1
Dinv07263 Davidia involucrata HOM05D005859 ORTHO05D007576 2.8e-127 458.8 249 90.0
Actinidia22411 Actinidia chinensis HOM05D005859 ORTHO05D007576 5.2e-126 454.5 249 89.6
Rhsim05G0088100 Rhododendron simsii HOM05D005859 ORTHO05D007576 4.4e-125 451.4 251 88.0
Haze_21816 Corylus avellana HOM05D005859 ORTHO05D007576 2.2e-124 449.1 251 86.1
Cfa013324 Carpinus fangiana HOM05D005859 ORTHO05D007576 3.8e-124 448.4 251 86.1
Ciclev10009277m.g Citrus clementina HOM05D005859 ORTHO05D007576 3.8e-124 448.4 249 87.6
QL12p026076 Quercus lobata HOM05D005859 ORTHO05D007576 1.4e-123 446.4 249 87.1
Rhsim02G0125100 Rhododendron simsii HOM05D005859 ORTHO05D007576 1.4e-123 446.4 251 87.6
Atru.chr7.2673 Acer truncatum HOM05D005859 ORTHO05D007576 4.6e-122 441.4 249 85.9
ClCG08G012440 Citrullus lanatus HOM05D005859 ORTHO05D007576 4.6e-122 441.4 248 87.1
Cpa.g.sc10.203 Carica papaya HOM05D005859 ORTHO05D007576 6.0e-122 441.0 249 85.9
COL.COLO4_34684 Corchorus olitorius HOM05D005859 ORTHO05D007576 6.0e-122 441.0 248 85.5
CANSAT64G2965 Cannabis sativa HOM05D005859 ORTHO05D007576 7.8e-122 440.7 251 85.3
Sabra06G0214800 Salix brachista HOM05D005859 ORTHO05D007576 7.8e-122 440.7 251 84.9
Potri.006G277100 Populus trichocarpa HOM05D005859 ORTHO05D007576 1.7e-121 439.5 251 84.9
CiPaw.07G208600 Carya illinoinensis HOM05D005859 ORTHO05D007576 2.3e-121 439.1 248 86.3
MELO3C011163.2 Cucumis melo HOM05D005859 ORTHO05D007576 3.0e-121 438.7 248 86.7
Duzib151G0554 Durio zibethinus HOM05D005859 ORTHO05D007576 3.0e-121 438.7 248 85.5
Thecc.04G293600 Theobroma cacao HOM05D005859 ORTHO05D007576 3.0e-121 438.7 249 85.9
CSS0022235 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.9e-121 438.3 253 87.0
Prupe.1G454800 Prunus persica HOM05D005859 ORTHO05D007576 5.1e-121 438.0 251 85.7
CsaV3_2G031130 Cucumis sativus L. HOM05D005859 ORTHO05D007576 8.7e-121 437.2 248 86.3
Glyma.04G078700 Glycine max HOM05D005859 ORTHO05D007576 1.9e-120 436.0 251 85.7
Gohir.D09G062800 Gossypium hirsutum HOM05D005859 ORTHO05D007576 1.9e-120 436.0 248 85.5
VMungo1309G0784 Vigna mungo HOM05D005859 ORTHO05D007576 7.3e-120 434.1 251 85.3
Ca_15630_v3 Cicer arietinum L. HOM05D005859 ORTHO05D007576 9.6e-120 433.7 251 85.3
Lj1g0020437 Lotus japonicus HOM05D005859 ORTHO05D007576 9.6e-120 433.7 251 84.5
Gohir.A09G063900 Gossypium hirsutum HOM05D005859 ORTHO05D007576 1.6e-119 433.0 252 82.9
Gorai.006G077600 Gossypium raimondii HOM05D005859 ORTHO05D007576 1.6e-119 433.0 248 85.1
Sc10g0009100 Simmondsia chinensis HOM05D005859 ORTHO05D007576 1.6e-119 433.0 253 83.4
RcHm_v2.0_Chr6g0305541 Rosa chinensis HOM05D005859 ORTHO05D007576 2.1e-119 432.6 251 83.7
Potri.018G003900 Populus trichocarpa HOM05D005859 ORTHO05D007576 3.6e-119 431.8 251 83.7
Duzib151G0446 Durio zibethinus HOM05D005859 ORTHO05D007576 6.2e-119 431.0 248 84.7
Manes.08G049200 Manihot esculenta HOM05D005859 ORTHO05D007576 1.4e-118 429.9 251 84.1
Phvul.009G104500 Phaseolus vulgaris HOM05D005859 ORTHO05D007576 1.4e-118 429.9 251 84.9
Sed0013908 Sechium edule HOM05D005859 ORTHO05D007576 1.8e-118 429.5 248 84.7
Glyma.06G080300 Glycine max HOM05D005859 ORTHO05D007576 2.4e-118 429.1 251 84.9
TWI63G1176 Tripterygium wilfordii HOM05D005859 ORTHO05D007576 2.4e-118 429.1 251 82.5
MD08G1121000 Malus domestica HOM05D005859 ORTHO05D007576 6.9e-118 427.6 247 84.2
Psat5g022960 Pisum sativum HOM05D005859 ORTHO05D007576 1.2e-117 426.8 248 83.1
FvH4_2g36340 Fragaria vesca HOM05D005859 ORTHO05D007576 1.5e-117 426.4 251 82.9
FAN15G0047 Fragaria x ananassa HOM05D005859 ORTHO05D007576 1.5e-117 426.4 251 82.9
FAN20G1422 Fragaria x ananassa HOM05D005859 ORTHO05D007576 2.6e-117 425.6 251 82.5
ECA238G0328 Erigeron canadensis HOM05D005859 ORTHO05D007576 3.4e-117 425.2 250 83.2
Sed0022456 Sechium edule HOM05D005859 ORTHO05D007576 3.4e-117 425.2 248 84.3
AUR62007184 Chenopodium quinoa HOM05D005859 ORTHO05D007576 1.7e-116 422.9 253 80.6
Ah.07g199340 Amaranthus hybridus HOM05D005859 ORTHO05D007576 2.9e-116 422.2 253 80.6
DCAR_010833 Daucus carota HOM05D005859 ORTHO05D007576 2.9e-116 422.2 248 84.3
Sabra18G0009500 Salix brachista HOM05D005859 ORTHO05D007576 3.8e-116 421.8 251 82.9
Lalb_Chr11g0064301 Lupinus albus HOM05D005859 ORTHO05D007576 6.4e-116 421.0 249 83.1
Sabra18G0001700 Salix brachista HOM05D005859 ORTHO05D007576 8.4e-116 420.6 251 82.5
Medtr3g109360 Medicago truncatula HOM05D005859 ORTHO05D007576 3.2e-115 418.7 251 81.3
TPR.G1368 Trifolium pratense HOM05D005859 ORTHO05D007576 3.2e-115 418.7 251 81.3
Lsat_1_v5_gn_5_41801 Lactuca sativa HOM05D005859 ORTHO05D007576 7.1e-115 417.5 248 82.7
Eucgr.A02021 Eucalyptus grandis HOM05D005859 ORTHO05D007576 2.1e-114 416.0 251 79.7
Oeu056039.1 Olea europaea HOM05D005859 ORTHO05D007576 3.5e-114 415.2 251 80.5
THA.LOC104814931 Tarenaya hassleriana HOM05D005859 ORTHO05D007576 3.5e-114 415.2 252 80.6
TAR625G0738 Trochodendron aralioides HOM05D005859 ORTHO05D007576 7.9e-114 414.1 261 78.9
PGR042G0112 Punica granatum HOM05D005859 ORTHO05D007576 1.3e-113 413.3 251 78.5
EL10Ac5g12246 Beta vulgaris HOM05D005859 ORTHO05D007576 2.3e-113 412.5 253 79.8
Nn2g12765 Nelumbo nucifera HOM05D005859 ORTHO05D007576 5.6e-112 407.9 259 77.6
Migut.A01131 Erythranthe guttata HOM05D005859 ORTHO05D007576 3.7e-111 405.2 253 80.6
MSTRG.12122 Avicennia marina HOM05D005859 ORTHO05D007576 5.3e-110 401.4 250 79.6
Nitab4.5_0003379g0070 Nicotiana tabacum HOM05D005859 ORTHO05D007576 9.9e-109 397.1 249 79.1
Nitab4.5_0006282g0050 Nicotiana tabacum HOM05D005859 ORTHO05D007576 1.3e-108 396.7 249 79.5
AL6G36490 Arabidopsis lyrata HOM05D005859 ORTHO05D007576 1.7e-108 396.4 249 78.7
SalBow1G3786 Salvia bowleyana HOM05D005859 ORTHO05D007576 1.7e-108 396.4 253 78.7
Thhalv10004821m.g Eutrema salsugineum HOM05D005859 ORTHO05D007576 2.2e-108 396.0 248 77.8
Aa31LG11G4050 Aethionema arabicum HOM05D005859 ORTHO05D007576 2.9e-108 395.6 252 79.4
CAN.G149.19 Capsicum annuum HOM05D005859 ORTHO05D007576 2.9e-108 395.6 241 80.5
Cc09_g05860 Coffea canephora HOM05D005859 ORTHO05D007576 2.9e-108 395.6 245 79.6
CARHR188610 Cardamine hirsuta HOM05D005859 ORTHO05D007576 4.9e-108 394.8 253 77.1
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 6.4e-108 394.4 249 78.3
A06p35610 Brassica napus HOM05D005859 ORTHO05D007576 8.4e-108 394.0 249 78.3
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 8.4e-108 394.0 249 78.3
Solyc02g068650.2 Solanum lycopersicum HOM05D005859 ORTHO05D007576 1.1e-107 393.7 239 80.8
Carub.0006s2269 Capsella rubella HOM05D005859 ORTHO05D007576 1.4e-107 393.3 239 80.8
SGA_v2.0_scaffold104G30176 Striga asiatica HOM05D005859 ORTHO05D007576 1.4e-107 393.3 244 79.1
PGSC0003DMG400010428 Solanum tuberosum HOM05D005859 ORTHO05D007576 2.4e-107 392.5 244 79.1
Sp2g22610 Schrenkiella parvula HOM05D005859 ORTHO05D007576 5.5e-107 391.3 248 77.0
AT5G24840 Arabidopsis thaliana HOM05D005859 ORTHO05D007576 1.2e-106 390.2 239 80.8
CSS0005155 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.5e-106 388.7 254 79.5
MBI07_g41262_MAGBIO Magnolia biondii HOM05D005859 ORTHO05D007576 3.5e-106 388.7 250 77.2
Sopen02g017820 Solanum pennellii HOM05D005859 ORTHO05D007576 6.0e-106 387.9 238 79.8
Aqoxy7G02813 Aquilegia oxysepala HOM05D005859 ORTHO05D007576 1.0e-105 387.1 249 77.1
PSO063G7086 Papaver somniferum HOM05D005859 ORTHO05D007576 3.0e-105 385.6 263 73.0
BcaB04g19801 Brassica carinata HOM05D005859 ORTHO05D007576 6.7e-105 384.4 248 77.0
CSS0033509 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 9.0e-102 374.0 201 90.0
BcaC04g23549 Brassica carinata HOM05D005859 ORTHO05D007576 1.2e-101 373.6 249 73.5
HPP92_010546 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.0e-101 372.9 242 74.0
Peaxi162Scf00149g00014 Petunia axillaris HOM05D005859 ORTHO05D007576 1.0e-100 370.5 247 74.9
Zm00001eb208790 Zea mays HOM05D005859 ORTHO05D007576 1.1e-99 367.1 241 73.9
unitig_21.g20313 Utricularia gibba HOM05D005859 ORTHO05D007576 1.9e-99 366.3 236 75.8
HPP92_010527 Vanilla planifolia HOM05D005859 ORTHO05D007576 7.1e-99 364.4 239 73.2
CSS0049229 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 5.1e-97 358.2 253 74.7
MD15G1100000 Malus domestica HOM05D005859 ORTHO05D007576 6.7e-97 357.8 239 75.7
ATR0697G154 Amborella trichopoda HOM05D005859 ORTHO05D007576 2.2e-92 342.8 240 70.0
AUR62018819 Chenopodium quinoa HOM05D005859 ORTHO05D007576 2.2e-92 342.8 253 68.4
SEGI_16955 Sequoiadendron giganteum HOM05D005859 ORTHO05D007576 1.9e-91 339.7 267 64.0
CSS0043283 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.6e-90 336.7 250 71.2
Pp3c24_9600 Physcomitrium patens HOM05D005859 ORTHO05D007576 1.3e-89 333.6 235 66.8
HanXRQChr14g0440281 Helianthus annuus HOM05D005859 ORTHO05D007576 8.7e-89 330.9 191 83.2
Mapoly0026s0057 Marchantia polymorpha HOM05D005859 ORTHO05D007576 8.7e-89 330.9 263 61.6
SMO358G0125 Selaginella moellendorffii HOM05D005859 ORTHO05D007576 2.5e-88 329.3 238 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1368 Anthoceros agrestis HOM05D005859 ORTHO05D007576 1.8e-86 323.2 254 62.6
CBR_g63067 Chara braunii HOM05D005859 ORTHO05D007576 1.0e-84 317.4 267 58.8
GSVIVG01035552001 Vitis vinifera HOM05D005859 ORTHO05D007576 1.9e-83 313.2 243 69.5
CDE05G2856 Ceratophyllum demersum HOM05D005859 ORTHO05D007576 1.4e-78 297.0 193 75.6
HPP92_010585 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.4e-75 287.0 185 75.1
Cre07.g314550 Chlamydomonas reinhardtii HOM05D005859 ORTHO05D007576 1.4e-73 280.4 255 53.7
HanXRQChr07g0193381 Helianthus annuus HOM05D005859 ORTHO05D007576 5.2e-73 278.5 157 86.6
Lj2P347T15 Lonicera japonica HOM05D005859 ORTHO05D007576 4.4e-72 275.4 159 85.5
HanXRQChr09g0275211 Helianthus annuus HOM05D005859 ORTHO05D007576 9.7e-72 274.2 159 82.4
CSS0012487 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.6e-69 266.9 250 59.2
MCO01G481 Micromonas commoda HOM05D005859 ORTHO05D007576 7.7e-69 264.6 238 53.8
PRCOL_00003713 Prasinoderma coloniale HOM05D005859 ORTHO05D007576 6.7e-65 251.5 233 54.9
Dinv07265 Davidia involucrata HOM05D005859 ORTHO05D007576 1.7e-63 246.9 142 87.3
Haze_26141 Corylus avellana HOM05D005859 ORTHO05D007576 2.4e-54 216.5 233 45.5
HPP92_010304 Vanilla planifolia HOM05D005859 ORTHO05D007576 3.5e-53 212.6 194 56.7
CSS0016583 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.0e-52 211.1 120 86.7
BolC9t53628H Brassica oleracea HOM05D005859 ORTHO05D007576 1.3e-52 210.7 118 83.1
HPP92_010638 Vanilla planifolia HOM05D005859 ORTHO05D007576 4.4e-48 195.7 117 78.6
CSS0020153 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.3e-43 179.5 96 90.6
HPP92_010538 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.2e-40 171.0 103 77.7
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 9.8e-32 141.4 83 85.5
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 4.1e-30 136.0 85 78.8
Os06g0236900 Oryza sativa ssp. japonica HOM05D005859 ORTHO05D007576 7.8e-29 131.7 81 76.5
BolC9t53624H Brassica oleracea HOM05D000880 ORTHO05D008158 1.7e-15 87.4 56 76.8
A09p06400 Brassica napus HOM05D005859 ORTHO05D007576 1.3e-12 77.8 48 72.9
HPP92_010586 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.3e-12 77.8 49 73.5
A09p06390 Brassica napus HOM05D000880 ORTHO05D008158 8.7e-12 75.1 53 73.6
ATR1096G015 Amborella trichopoda HOM05D005859 ORTHO05D007576 9.6e-11 71.6 54 57.4
AagrBONN_evm.TU.Sc2ySwM_117.3790 Anthoceros agrestis HOM05D005695 ORTHO05D007810 5.2e-09 65.9 179 27.9
Eucgr.D01073 Eucalyptus grandis HOM05D005695 ORTHO05D007810 9.9e-08 61.6 169 32.5
PSO782G5257 Papaver somniferum HOM05D005695 ORTHO05D007810 1.3e-07 61.2 218 29.8
HPP92_023786 Vanilla planifolia HOM05D005695 ORTHO05D007810 1.3e-07 61.2 175 32.0
SEGI_31772 Sequoiadendron giganteum HOM05D005695 ORTHO05D007810 4.9e-07 59.3 171 29.8
Zm00001eb004570 Zea mays HOM05D005695 ORTHO05D007810 4.9e-07 59.3 205 29.3
Cc05_g03930 Coffea canephora HOM05D005695 ORTHO05D007810 6.4e-07 58.9 210 30.0
Nn7g37385 Nelumbo nucifera HOM05D005695 ORTHO05D007810 1.1e-06 58.2 183 29.5
Pp3c18_9830 Physcomitrium patens HOM05D005695 ORTHO05D007810 1.1e-06 58.2 265 24.9
ATR0568G060 Amborella trichopoda HOM05D005695 ORTHO05D007810 1.4e-06 57.8 146 31.5
Glyma.07G122300 Glycine max HOM05D005695 ORTHO05D007810 1.4e-06 57.8 172 30.2
Hma1.2p1_0128F.1_g060080 Hydrangea macrophylla HOM05D005695 ORTHO05D007810 1.4e-06 57.8 199 30.2
PSO063G4708 Papaver somniferum HOM05D005695 ORTHO05D007810 1.4e-06 57.8 218 28.9
Mapoly0006s0284 Marchantia polymorpha HOM05D005695 ORTHO05D007810 1.9e-06 57.4 172 26.7
MCO05G350 Micromonas commoda HOM05D005695 ORTHO05D007810 1.9e-06 57.4 184 25.0
Gorai.007G250100 Gossypium raimondii HOM05D005695 ORTHO05D007810 2.4e-06 57.0 181 32.0
TAR715G0002 Trochodendron aralioides HOM05D005695 ORTHO05D007810 2.4e-06 57.0 171 28.7
Cfa003697 Carpinus fangiana HOM05D005695 ORTHO05D007810 4.2e-06 56.2 175 30.9
Ciclev10032172m.g Citrus clementina HOM05D005695 ORTHO05D007810 4.2e-06 56.2 175 33.1
CANSAT54G1451 Cannabis sativa HOM05D005695 ORTHO05D007810 5.4e-06 55.8 189 29.1
CiPaw.02G047100 Carya illinoinensis HOM05D005695 ORTHO05D007810 5.4e-06 55.8 179 29.6
Thecc.05G234400 Theobroma cacao HOM05D005695 ORTHO05D007810 5.4e-06 55.8 165 33.3
ClCG05G002480 Citrullus lanatus HOM05D005695 ORTHO05D007810 7.1e-06 55.5 180 31.1
CBR_g38752 Chara braunii HOM05D005695 ORTHO05D007810 9.3e-06 55.1 236 24.2
Haze_15789 Corylus avellana HOM05D005695 ORTHO05D007810 9.3e-06 55.1 175 30.9
HanXRQChr04g0117691 Helianthus annuus HOM05D005695 ORTHO05D007810 9.3e-06 55.1 175 32.0


User provided reference genes

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