Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 4.0e-284 980.7 484 100.0
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 9.1e-228 793.5 410 97.8
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 5.7e-206 721.1 483 75.2
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 2.4e-188 662.5 535 64.5
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 5.8e-182 641.3 483 66.9
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 1.3e-178 630.2 479 65.3
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 1.6e-176 623.2 480 64.8
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 4.7e-176 621.7 478 64.2
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 1.2e-174 617.1 481 63.8
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 3.4e-174 615.5 479 64.1
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 9.9e-174 614.0 478 64.2
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 6.4e-173 611.3 478 63.8
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 8.4e-173 610.9 435 71.7
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.9e-172 609.8 478 63.6
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 1.9e-172 609.8 482 65.6
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 2.3e-170 602.8 477 63.3
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 1.9e-169 599.7 481 63.0
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 1.9e-169 599.7 485 62.1
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 2.5e-169 599.4 486 61.7
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 1.3e-168 597.0 482 61.6
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 2.1e-168 596.3 484 63.6
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 6.2e-168 594.7 485 62.1
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 1.1e-167 594.0 483 62.3
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 2.4e-167 592.8 480 63.1
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 6.9e-167 591.3 481 62.4
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 2.6e-166 589.3 486 60.9
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 4.5e-166 588.6 477 62.9
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 5.8e-166 588.2 493 61.7
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 1.3e-165 587.0 478 62.8
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 1.7e-165 586.6 482 62.4
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 3.2e-164 582.4 480 61.7
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 7.1e-164 581.3 481 62.4
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 6.0e-163 578.2 480 61.5
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 2.3e-162 576.2 481 60.7
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 6.7e-162 574.7 492 59.6
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 1.9e-161 573.2 482 60.4
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 9.6e-161 570.9 487 58.9
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 1.3e-160 570.5 482 59.1
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 2.1e-160 569.7 483 62.3
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 2.8e-160 569.3 484 59.5
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 6.2e-160 568.2 483 58.6
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 8.1e-160 567.8 482 58.3
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 1.8e-159 566.6 482 60.2
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 1.2e-158 563.9 486 60.7
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 3.4e-158 562.4 485 59.0
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 1.3e-157 560.5 482 58.5
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 1.7e-157 560.1 495 58.4
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 6.4e-157 558.1 483 57.1
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 1.9e-156 556.6 481 57.4
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 1.9e-156 556.6 487 58.9
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 4.2e-156 555.4 478 60.0
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.3e-154 550.4 477 59.7
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 1.3e-154 550.4 480 59.0
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 1.1e-153 547.4 510 56.7
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 1.5e-153 547.0 483 56.9
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 3.3e-153 545.8 483 56.3
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 7.4e-153 544.7 518 53.5
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 1.3e-152 543.9 483 56.1
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.1e-152 543.1 477 58.7
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 2.1e-152 543.1 487 55.2
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 2.1e-152 543.1 487 55.2
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 2.8e-152 542.7 479 55.7
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 4.8e-152 542.0 485 56.9
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 6.2e-152 541.6 479 55.7
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 6.2e-152 541.6 479 55.5
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 6.2e-152 541.6 479 55.7
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 1.1e-151 540.8 482 57.9
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 2.4e-151 539.7 479 55.3
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 3.1e-151 539.3 486 57.8
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 5.3e-151 538.5 483 55.5
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 9.0e-151 537.7 486 54.3
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 1.0e-149 534.3 482 54.4
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 1.3e-149 533.9 478 57.7
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 2.2e-149 533.1 487 56.1
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 2.9e-149 532.7 486 57.0
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 4.9e-149 531.9 477 57.7
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 6.5e-149 531.6 509 54.0
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 1.2e-147 527.3 483 56.9
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 2.7e-147 526.2 514 52.1
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 4.6e-147 525.4 481 54.7
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 7.9e-147 524.6 515 53.0
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 1.0e-146 524.2 481 54.9
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 1.1e-145 520.8 480 55.6
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 3.1e-143 512.7 436 60.6
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 2.6e-142 509.6 491 52.7
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 4.6e-139 498.8 337 72.4
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 3.9e-138 495.7 489 55.6
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.0e-133 481.1 444 55.4
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 1.8e-130 470.3 506 51.4
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 8.8e-130 468.0 456 52.6
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 2.9e-125 453.0 472 48.3
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 1.9e-124 450.3 355 65.9
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 3.2e-124 449.5 369 64.0
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 9.4e-124 448.0 413 56.4
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 2.7e-123 446.4 397 57.7
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 1.8e-119 433.7 478 50.8
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 1.0e-109 401.4 391 51.2
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 2.2e-104 383.6 524 40.3
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 3.8e-101 372.9 292 66.4
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 7.2e-100 368.6 485 41.9
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 3.0e-98 363.2 354 55.9
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.2e-97 361.3 484 40.7
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 1.5e-97 360.9 489 40.3
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 4.0e-90 336.3 490 38.6
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 6.4e-88 328.9 456 41.9
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 1.1e-71 275.0 478 35.8
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 5.3e-58 229.6 270 44.8
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 5.8e-49 199.5 515 28.7
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 7.4e-44 182.6 246 43.5
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 9.6e-44 182.2 253 39.9
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 1.6e-43 181.4 493 29.2
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 8.1e-43 179.1 282 37.6
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 4.9e-40 169.9 157 58.6
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 8.4e-40 169.1 157 58.6
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 3.6e-22 110.5 105 47.6
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 1.8e-21 108.2 822 20.3
CSS0016884 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 2.8e-19 100.9 65 73.8
CSS0037496 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 2.8e-19 100.9 65 73.8
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.2e-17 95.5 112 50.9
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 1.1e-15 89.0 81 60.5
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 9.4e-15 85.9 149 38.9
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 2.1e-14 84.7 123 39.8
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.7e-14 84.3 81 56.8
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 1.5e-12 78.6 69 55.1
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.1e-06 58.2 65 52.3
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 4.7e-06 57.0 48 58.3


User provided reference genes

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