Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 8.3e-38 159.8 79 100.0
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 6.6e-35 150.2 79 94.9
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.2e-21 104.4 61 88.5
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.2e-21 104.4 61 88.5
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 1.0e-19 99.8 60 86.7
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.7e-19 99.0 61 82.0
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.7e-19 99.0 61 82.0
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-18 96.3 61 78.7
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 2.5e-18 95.1 61 82.0
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 5.6e-18 94.0 62 74.2
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 9.6e-18 93.2 61 77.0
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 2.1e-17 92.0 60 76.7
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 4.0e-16 87.8 67 68.7
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 4.0e-16 87.8 62 74.2
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 5.3e-16 87.4 60 71.7
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 9.0e-16 86.7 61 75.4
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 1.2e-15 86.3 58 74.1
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 1.2e-15 86.3 58 72.4
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 1.5e-15 85.9 67 68.7
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 1.5e-15 85.9 67 67.2
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 2.0e-15 85.5 67 67.2
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 2.6e-15 85.1 60 71.7
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 2.6e-15 85.1 62 67.7
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 3.4e-15 84.7 61 72.1
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 4.5e-15 84.3 58 72.4
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 5.8e-15 84.0 63 69.8
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 7.6e-15 83.6 60 66.7
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 7.6e-15 83.6 60 70.0
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 9.9e-15 83.2 58 72.4
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 9.9e-15 83.2 58 72.4
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 9.9e-15 83.2 58 70.7
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 1.7e-14 82.4 57 70.2
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 2.9e-14 81.6 58 69.0
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 3.8e-14 81.3 67 64.2
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 4.9e-14 80.9 61 63.9
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 1.4e-13 79.3 60 65.0
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 7.1e-13 77.0 59 62.7
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 7.1e-13 77.0 61 59.0
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.6e-12 75.9 61 62.3
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 2.1e-12 75.5 61 59.0
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 2.7e-12 75.1 61 62.3
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 4.6e-12 74.3 60 61.7
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 4.6e-12 74.3 67 58.2
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 4.6e-12 74.3 62 58.1
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 4.6e-12 74.3 60 58.3
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 7.9e-12 73.6 67 52.2
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 1.0e-11 73.2 61 60.7
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 1.0e-11 73.2 72 54.2
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 1.3e-11 72.8 60 58.3
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 1.8e-11 72.4 61 59.0
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 3.0e-11 71.6 61 55.7
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 3.0e-11 71.6 67 52.2
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 3.9e-11 71.2 60 55.0
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 3.9e-11 71.2 60 55.0
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 3.9e-11 71.2 60 55.0
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 3.9e-11 71.2 60 63.3
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 5.1e-11 70.9 59 55.9
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 5.1e-11 70.9 67 58.2
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 6.7e-11 70.5 61 55.7
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 6.7e-11 70.5 61 55.7
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 6.7e-11 70.5 61 57.4
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 6.7e-11 70.5 59 55.9
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 8.7e-11 70.1 61 55.7
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 8.7e-11 70.1 62 54.8
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 1.1e-10 69.7 67 50.7
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 1.9e-10 68.9 67 53.7
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 1.9e-10 68.9 68 54.4
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 1.9e-10 68.9 57 64.9
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 2.5e-10 68.6 57 59.6
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 2.5e-10 68.6 57 59.6
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 2.5e-10 68.6 67 50.7
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 3.3e-10 68.2 67 52.2
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 3.3e-10 68.2 67 50.7
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 4.3e-10 67.8 67 50.7
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 4.3e-10 67.8 67 50.7
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 5.6e-10 67.4 67 49.3
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 5.6e-10 67.4 67 49.3
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 7.4e-10 67.0 59 54.2
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 9.6e-10 66.6 53 62.3
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 9.6e-10 66.6 53 62.3
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 9.6e-10 66.6 61 55.7
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 1.3e-09 66.2 59 54.2
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 1.3e-09 66.2 59 54.2
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.6e-09 65.9 73 47.9
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 1.6e-09 65.9 58 58.6
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.8e-09 64.3 53 60.4
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 4.8e-09 64.3 57 57.9
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 8.1e-09 63.5 62 50.0
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 1.4e-08 62.8 59 57.6
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 1.8e-08 62.4 66 54.5
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 1.8e-08 62.4 66 54.5
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 4.0e-08 61.2 67 46.3
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.3e-08 60.8 70 48.6
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 5.3e-08 60.8 58 51.7
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 1.5e-07 59.3 62 53.2
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 3.4e-07 58.2 68 52.9
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 9.9e-07 56.6 44 61.4
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 9.9e-07 56.6 44 61.4


User provided reference genes

Program Settings