Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.2e-144 516.5 260 100.0
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 9.6e-91 337.4 254 69.7
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.1e-90 336.3 242 70.7
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.1e-90 336.3 242 70.7
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.2e-87 326.2 259 66.4
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 6.2e-82 308.1 201 74.6
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 6.9e-81 304.7 262 63.0
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 7.6e-80 301.2 206 71.8
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 7.6e-80 301.2 254 61.4
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.1e-78 297.4 209 70.8
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.1e-78 297.4 209 70.8
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 5.5e-78 295.0 225 66.7
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 7.1e-78 294.7 235 64.7
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 9.3e-78 294.3 215 68.8
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 4.6e-77 292.0 211 67.8
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.0e-76 290.8 194 73.2
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 2.3e-76 289.7 244 62.3
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 3.0e-76 289.3 243 62.6
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 3.0e-76 289.3 224 65.6
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 6.7e-76 288.1 235 63.0
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.9e-75 286.6 191 73.3
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.5e-75 286.2 210 68.6
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 5.7e-75 285.0 277 57.8
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 1.6e-74 283.5 208 67.3
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 6.3e-74 281.6 206 67.0
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 8.2e-74 281.2 207 66.7
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 8.2e-74 281.2 201 69.7
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 8.2e-74 281.2 201 69.7
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 2.4e-73 279.6 194 70.6
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 4.1e-73 278.9 260 53.8
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 5.3e-73 278.5 198 69.7
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.3e-73 278.5 194 70.1
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 9.0e-73 277.7 223 62.8
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 2.0e-72 276.6 253 56.1
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.0e-71 274.2 194 68.0
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.7e-71 273.5 194 68.6
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 2.2e-71 273.1 194 68.6
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 2.9e-71 272.7 256 53.9
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 3.8e-71 272.3 194 68.0
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 3.8e-71 272.3 194 68.0
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 8.5e-71 271.2 194 68.6
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 1.1e-70 270.8 230 62.2
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-70 270.8 222 62.6
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.4e-70 270.4 191 68.6
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 7.2e-70 268.1 194 67.0
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 7.9e-69 264.6 211 62.6
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.3e-68 263.8 180 71.1
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 3.9e-68 262.3 193 66.3
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 5.1e-68 261.9 239 56.5
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 8.7e-68 261.2 194 65.5
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 8.7e-68 261.2 194 65.5
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 1.9e-67 260.0 194 64.9
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.5e-67 259.6 219 58.0
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 5.7e-67 258.5 194 64.4
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.7e-67 258.5 212 60.8
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 5.7e-67 258.5 200 61.0
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.2e-66 256.5 212 60.4
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 2.2e-66 256.5 201 64.2
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 3.7e-66 255.8 194 64.4
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 4.8e-66 255.4 212 60.4
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.4e-65 253.8 198 64.1
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.3e-65 251.9 194 63.9
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 2.6e-64 249.6 181 64.1
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.4e-64 249.2 194 62.9
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 2.2e-63 246.5 194 61.9
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 2.2e-63 246.5 194 61.9
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 2.2e-63 246.5 210 60.5
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.1e-62 244.2 176 66.5
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 2.5e-62 243.0 194 62.9
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 5.5e-62 241.9 207 57.0
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 7.2e-62 241.5 193 59.6
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.6e-61 238.8 183 65.0
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 6.7e-60 235.0 182 67.0
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 2.0e-59 233.4 244 55.3
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 3.3e-59 232.6 254 49.6
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 3.1e-57 226.1 197 58.9
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 2.6e-56 223.0 202 54.0
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 4.5e-56 222.2 217 54.4
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 7.7e-56 221.5 208 53.4
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 1.7e-55 220.3 208 53.4
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 4.2e-54 215.7 142 72.5
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 7.2e-54 214.9 160 63.1
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.2e-53 214.2 197 52.3
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.1e-53 213.4 186 55.4
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 7.9e-53 211.5 192 53.6
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.0e-52 211.1 185 54.1
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.4e-52 210.7 194 54.6
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.8e-52 210.3 157 62.4
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.0e-51 206.8 230 47.4
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 7.4e-51 204.9 222 50.9
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.8e-50 203.0 186 53.8
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.4e-49 200.7 196 56.6
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.8e-49 200.3 196 56.6
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-47 193.7 145 66.2
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 5.0e-47 192.2 144 66.0
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 3.2e-46 189.5 193 51.8
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.2e-45 187.6 228 43.9
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 4.7e-45 185.7 138 67.4
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 6.1e-45 185.3 222 44.6
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 3.0e-44 183.0 138 65.2
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 4.0e-44 182.6 194 47.9
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 2.6e-43 179.9 223 41.7
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 4.4e-43 179.1 193 44.0
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 5.7e-43 178.7 198 47.0
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 2.2e-42 176.8 193 43.5
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 2.8e-42 176.4 193 46.1
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 3.7e-42 176.0 221 42.1
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 8.2e-42 174.9 194 44.3
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.4e-41 173.3 192 44.8
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 3.1e-41 172.9 159 51.6
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 4.1e-41 172.6 197 45.7
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 5.3e-41 172.2 199 43.7
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.6e-40 170.6 209 44.0
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 2.0e-40 170.2 194 47.9
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 2.2e-39 166.8 232 39.7
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.9e-39 166.4 188 45.7
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 6.5e-39 165.2 227 39.6
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.5e-38 164.1 237 40.1
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 3.2e-38 162.9 244 38.5
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 4.2e-38 162.5 221 41.2
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 5.5e-38 162.2 228 40.4
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 1.2e-37 161.0 186 41.9
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 5.2e-36 155.6 198 40.4
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 8.8e-36 154.8 207 41.5
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.4e-35 152.9 254 37.4
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.4e-35 152.5 126 57.9
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 5.7e-35 152.1 237 38.4
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 5.7e-35 152.1 199 40.7
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.7e-34 150.6 195 40.5
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.2e-34 150.2 185 41.6
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 2.2e-34 150.2 164 48.2
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.8e-34 149.8 192 41.1
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 2.4e-33 146.7 181 40.9
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 7.0e-33 145.2 193 43.0
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 7.0e-33 145.2 171 43.3
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.6e-32 144.1 165 44.8
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 2.0e-32 143.7 231 38.1
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 3.5e-32 142.9 193 40.4
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 5.9e-32 142.1 195 42.6
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 8.6e-31 138.3 199 38.7
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.2e-30 136.0 129 51.9
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.2e-30 135.2 227 35.7
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 9.5e-30 134.8 129 51.9
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 3.6e-29 132.9 197 36.0
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 6.8e-28 128.6 195 36.9
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.0e-27 127.1 242 34.7
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.4e-27 125.9 196 38.3
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 5.7e-27 125.6 192 37.0
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 5.4e-25 119.0 192 36.5
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 5.9e-24 115.5 82 65.9
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.2e-19 101.3 115 43.5
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 2.2e-18 97.1 163 33.7
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 2.4e-17 93.6 182 29.7
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 9.2e-17 91.7 204 35.3
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 1.1e-14 84.7 83 55.4
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.9e-14 84.0 197 28.4
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 6.2e-13 79.0 99 48.5
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 8.9e-12 75.1 74 51.4
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 1.2e-11 74.7 50 70.0
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.0e-11 73.9 147 32.0
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 2.6e-11 73.6 74 56.8
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 1.7e-10 70.9 68 50.0
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 6.0e-08 62.4 121 29.8
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 2.3e-07 60.5 66 51.5
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 2.5e-06 57.0 168 25.0


User provided reference genes

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