Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 1.3e-110 403.7 302 100.0
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 5.4e-53 212.2 310 59.0
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.4e-48 197.6 303 66.0
vmacro16796 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 4.2e-45 186.0 303 67.7
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.0e-43 181.4 303 56.4
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 1.0e-43 181.4 310 58.1
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 3.3e-42 176.4 158 64.6
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 1.3e-41 174.5 298 48.7
Rhsim01G0028200 Rhododendron simsii HOM05D003759 ORTHO05D004149 1.6e-41 174.1 304 66.8
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 9.9e-39 164.9 298 48.0
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.4e-37 161.0 298 37.2
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 2.4e-37 160.2 303 46.9
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 9.3e-37 158.3 305 50.2
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 1.6e-36 157.5 308 46.4
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 3.5e-36 156.4 303 46.5
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 3.5e-36 156.4 302 53.6
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 7.9e-36 155.2 296 36.8
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 3.9e-35 152.9 309 44.3
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 1.9e-34 150.6 308 44.2
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.8e-33 146.7 309 47.9
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 2.8e-33 146.7 309 47.9
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 2.8e-33 146.7 329 35.0
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 3.6e-33 146.4 298 53.0
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 8.1e-33 145.2 298 55.4
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 8.1e-33 145.2 327 34.6
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 1.1e-32 144.8 328 35.4
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 2.4e-32 143.7 288 55.6
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 3.1e-32 143.3 310 40.6
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 3.1e-32 143.3 298 52.0
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 4.0e-32 142.9 297 51.9
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.2e-31 141.4 308 40.6
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 1.5e-31 141.0 327 34.3
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 1.5e-31 141.0 327 34.6
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 3.4e-31 139.8 327 35.5
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 5.8e-31 139.0 298 49.7
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 7.6e-31 138.7 308 40.6
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 7.6e-31 138.7 295 38.6
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 9.9e-31 138.3 309 47.9
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 2.2e-30 137.1 310 50.3
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 2.2e-30 137.1 305 34.4
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 2.9e-30 136.7 154 53.2
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 3.8e-30 136.3 298 50.3
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 4.9e-30 136.0 297 54.5
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 6.4e-30 135.6 329 33.1
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 6.4e-30 135.6 298 44.0
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 1.4e-29 134.4 298 49.7
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.4e-29 134.4 305 43.0
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 1.4e-29 134.4 314 41.7
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 4.2e-29 132.9 302 44.4
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 5.5e-29 132.5 303 43.9
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 9.3e-29 131.7 303 33.0
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 2.7e-28 130.2 310 43.5
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 3.5e-28 129.8 300 40.3
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 3.5e-28 129.8 302 34.4
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 6.0e-28 129.0 300 44.0
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 6.0e-28 129.0 304 47.0
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 6.0e-28 129.0 304 41.1
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 7.9e-28 128.6 302 34.4
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 1.0e-27 128.3 298 52.7
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.3e-27 127.9 303 32.7
Hma1.2p1_0222F.1_g093653 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 1.3e-27 127.9 363 46.0
Hma1.2p1_2680F.1_g326810 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 1.3e-27 127.9 363 46.0
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 1.3e-27 127.9 302 34.8
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 2.3e-27 127.1 304 41.8
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 3.0e-27 126.7 299 32.4
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 3.0e-27 126.7 299 43.1
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 3.0e-27 126.7 304 44.7
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 3.0e-27 126.7 304 48.0
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 3.0e-27 126.7 306 33.0
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 3.9e-27 126.3 302 51.0
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 8.7e-27 125.2 304 41.4
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 8.7e-27 125.2 303 40.6
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.1e-26 124.8 310 37.1
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 3.3e-26 123.2 315 42.2
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 4.3e-26 122.9 302 42.7
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 7.4e-26 122.1 302 55.3
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 9.6e-26 121.7 303 33.3
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 4.8e-25 119.4 297 48.8
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 4.8e-25 119.4 302 34.4
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 8.1e-25 118.6 298 50.0
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 1.1e-24 118.2 307 33.6
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 2.4e-24 117.1 85 74.1
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 3.1e-24 116.7 324 31.8
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 3.1e-24 116.7 308 54.2
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 9.0e-24 115.2 301 33.9
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 1.2e-23 114.8 306 32.0
Duzib168G1894 Durio zibethinus HOM05D003759 ORTHO05D004149 1.2e-23 114.8 255 46.3
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 2.0e-23 114.0 306 34.3
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 2.0e-23 114.0 304 33.6
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 2.6e-23 113.6 315 32.1
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 7.6e-23 112.1 83 71.1
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 1.0e-22 111.7 305 48.2
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 1.3e-22 111.3 302 32.5
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 1.7e-22 110.9 305 33.8
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 6.5e-22 109.0 301 32.2
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 1.1e-21 108.2 305 32.5
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 1.2e-20 104.8 326 30.7
Potri.006G183000 Populus trichocarpa HOM05D003759 ORTHO05D004149 1.6e-20 104.4 249 54.2
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 1.6e-20 104.4 302 30.8
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 7.9e-20 102.1 314 39.2
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 7.9e-20 102.1 151 44.4
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 1.8e-19 100.9 304 30.6
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 5.1e-19 99.4 311 29.3
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 1.1e-18 98.2 323 39.0
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 1.5e-18 97.8 323 30.7
Sed0022175 Sechium edule HOM05D003759 ORTHO05D004149 1.5e-18 97.8 150 44.0
Sed0003883 Sechium edule HOM05D003759 ORTHO05D004149 9.6e-18 95.1 166 41.0
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 1.3e-17 94.7 296 29.7
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 1.3e-17 94.7 64 75.0
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 1.3e-17 94.7 64 75.0
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 1.3e-17 94.7 297 30.6
CsaV3_1G029050 Cucumis sativus L. HOM05D003759 ORTHO05D004149 4.8e-17 92.8 63 68.3
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 4.8e-17 92.8 153 43.1
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 6.3e-17 92.4 127 47.2
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.5e-15 87.8 294 28.2
Peaxi162Scf00401g00425 Petunia axillaris HOM05D003759 ORTHO05D004149 4.5e-15 86.3 267 40.4
Dinv41365 Davidia involucrata HOM05D003759 ORTHO05D004149 7.6e-15 85.5 68 69.1
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 6.5e-14 82.4 306 29.7
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 1.9e-13 80.9 329 27.7
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 7.2e-13 79.0 282 28.4
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 2.7e-12 77.0 262 30.5
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 6.1e-12 75.9 280 27.9
Oeu028997.1 Olea europaea HOM05D003759 ORTHO05D004149 1.8e-11 74.3 265 28.7
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 3.9e-11 73.2 305 29.8
ECA240G4545 Erigeron canadensis HOM05D003759 ORTHO05D004149 6.7e-11 72.4 96 49.0
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 1.1e-10 71.6 159 35.8
Dinv13414 Davidia involucrata HOM05D008192 ORTHO05D010301 1.9e-10 70.9 93 46.2
Nn8g39944 Nelumbo nucifera HOM05D003759 ORTHO05D004149 2.5e-10 70.5 55 65.5
A02p08110 Brassica napus HOM05D003759 ORTHO05D004149 3.3e-10 70.1 73 50.7
BraA02t05884Z Brassica rapa HOM05D003759 ORTHO05D004149 3.3e-10 70.1 73 50.7
CsaV3_2G007570 Cucumis sativus L. HOM05D003759 ORTHO05D004149 1.3e-09 68.2 264 28.4
BcaB05g22386 Brassica carinata HOM05D003759 ORTHO05D004149 1.6e-09 67.8 65 53.8
C02p13760 Brassica napus HOM05D003759 ORTHO05D004149 1.6e-09 67.8 65 53.8
BolC2t07494H Brassica oleracea HOM05D003759 ORTHO05D004149 1.6e-09 67.8 65 53.8
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 2.2e-09 67.4 286 26.2
CSS0005628 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 3.7e-09 66.6 90 45.6
CSS0017566 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 3.7e-09 66.6 90 45.6
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 6.3e-09 65.9 298 26.2
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 1.8e-08 64.3 299 26.1
HPP92_018342 Vanilla planifolia HOM05D003759 ORTHO05D004149 1.8e-08 64.3 301 24.9
Dinv08187 Davidia involucrata HOM05D008192 ORTHO05D010301 3.1e-08 63.5 123 39.0
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 5.3e-08 62.8 280 26.4
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 5.3e-08 62.8 290 25.5
Sed0021485 Sechium edule HOM05D003759 ORTHO05D004149 6.9e-08 62.4 282 29.8
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 9.0e-08 62.0 284 27.8
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 1.2e-07 61.6 296 27.0
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 1.2e-07 61.6 284 27.8
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 1.2e-07 61.6 290 25.2
Haze_21404 Corylus avellana HOM05D008192 ORTHO05D010301 1.2e-07 61.6 91 45.1
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 1.5e-07 61.2 281 26.3
HanXRQChr13g0391321 Helianthus annuus HOM05D003759 ORTHO05D004149 1.5e-07 61.2 77 48.1
HanXRQChr16g0511321 Helianthus annuus HOM05D003759 ORTHO05D004149 1.5e-07 61.2 73 50.7
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 2.6e-07 60.5 280 26.1
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 2.6e-07 60.5 280 26.1
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 4.5e-07 59.7 303 26.1
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 4.5e-07 59.7 281 26.3
AUR62024800 Chenopodium quinoa HOM05D008192 ORTHO05D010301 4.5e-07 59.7 145 35.2
Gohir.A06G102100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 4.5e-07 59.7 113 41.6
Gorai.010G119200 Gossypium raimondii HOM05D008192 ORTHO05D010301 4.5e-07 59.7 113 41.6
HPP92_010344 Vanilla planifolia HOM05D045913 ORTHO05D004149 4.5e-07 59.7 40 67.5
FvH4_2g41181 Fragaria vesca HOM05D008192 ORTHO05D010301 5.9e-07 59.3 111 37.8
FAN15G3555 Fragaria x ananassa HOM05D002088 ORTHO05D002204 5.9e-07 59.3 116 36.2
A03p12490 Brassica napus HOM05D003759 ORTHO05D004149 7.7e-07 58.9 130 35.4
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 7.7e-07 58.9 69 47.8
FAN27G3331 Fragaria x ananassa HOM05D002088 ORTHO05D002204 7.7e-07 58.9 90 41.1
Gohir.D06G104100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 7.7e-07 58.9 113 41.6
BolC3t13911H Brassica oleracea HOM05D003759 ORTHO05D004149 1.0e-06 58.5 130 36.9
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 1.0e-06 58.5 119 37.0
MSTRG.11783 Avicennia marina HOM05D008192 ORTHO05D010301 1.3e-06 58.2 79 44.3
Aa31LG3G13740 Aethionema arabicum HOM05D003759 ORTHO05D004149 1.7e-06 57.8 290 26.9
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 1.7e-06 57.8 282 26.6
Migut.A00360 Erythranthe guttata HOM05D008192 ORTHO05D010301 2.2e-06 57.4 81 45.7
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 3.8e-06 56.6 280 26.4
Carub.0008s1844 Capsella rubella HOM05D003759 ORTHO05D004149 3.8e-06 56.6 133 34.6
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 3.8e-06 56.6 100 43.0
ATR0580G180 Amborella trichopoda HOM05D003759 ORTHO05D004149 5.0e-06 56.2 130 33.1
C03p14700 Brassica napus HOM05D003759 ORTHO05D004149 5.0e-06 56.2 130 36.2
Cfa013043 Carpinus fangiana HOM05D008192 ORTHO05D010301 6.5e-06 55.8 60 50.0
HanXRQChr09g0244571 Helianthus annuus HOM05D003759 ORTHO05D004149 6.5e-06 55.8 63 52.4
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 8.5e-06 55.5 282 25.9
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 8.5e-06 55.5 282 25.9
DCAR_021655 Daucus carota HOM05D002201 ORTHO05D007560 8.5e-06 55.5 59 49.2
Duzib168G0610 Durio zibethinus HOM05D008192 ORTHO05D010301 8.5e-06 55.5 69 44.9
FAN20G1545 Fragaria x ananassa HOM05D008192 ORTHO05D010301 8.5e-06 55.5 90 38.9
Sc09g0010700 Simmondsia chinensis HOM05D008192 ORTHO05D010301 8.5e-06 55.5 77 46.8
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 8.5e-06 55.5 144 31.2


User provided reference genes

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