Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 0.0e+00 2191.8 1103 100.0
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 3.5e-291 1005.4 668 76.0
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 1.9e-281 973.0 767 67.3
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 8.9e-263 911.0 739 64.5
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 3.1e-255 885.9 739 64.0
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 6.9e-255 884.8 751 63.2
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 1.4e-252 877.1 741 64.1
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 5.8e-246 855.1 742 61.6
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 9.9e-246 854.4 742 62.1
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 6.0e-243 845.1 742 60.4
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 2.3e-242 843.2 747 60.1
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 2.4e-239 833.2 748 59.9
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 5.3e-239 832.0 735 60.5
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 1.2e-238 830.9 720 61.4
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.4e-238 829.3 735 60.4
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 2.6e-230 803.1 737 59.4
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 7.6e-230 801.6 737 59.6
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 1.0e-229 801.2 739 58.2
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 1.6e-224 783.9 731 57.5
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 2.0e-222 776.9 705 59.4
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 2.6e-222 776.5 737 57.5
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.1e-220 771.2 737 57.5
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 1.4e-220 770.8 807 54.6
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 4.6e-219 765.8 660 61.1
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 7.9e-219 765.0 754 55.6
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 1.3e-218 764.2 747 56.0
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.8e-218 763.8 734 57.2
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 3.9e-218 762.7 735 57.4
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 2.2e-216 756.9 739 57.8
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 6.3e-216 755.4 742 54.3
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 1.8e-215 753.8 736 56.8
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 4.1e-215 752.7 735 56.5
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 1.2e-214 751.1 718 57.1
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 5.9e-214 748.8 716 57.5
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 7.7e-214 748.4 740 55.1
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.0e-213 748.0 747 56.1
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 2.2e-213 746.9 732 56.6
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 1.9e-212 743.8 725 56.1
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 3.6e-211 739.6 740 54.3
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 3.6e-211 739.6 739 54.0
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 6.1e-211 738.8 741 57.1
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 1.0e-210 738.0 746 53.5
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 8.2e-208 728.4 735 55.0
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 5.3e-207 725.7 742 53.9
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 1.0e-205 721.5 726 55.0
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.3e-205 721.1 732 53.0
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 3.8e-205 719.5 737 52.6
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 7.9e-203 711.8 741 53.8
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 7.9e-203 711.8 781 51.6
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 9.7e-201 704.9 734 51.6
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 6.3e-200 702.2 816 48.9
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 7.0e-199 698.7 784 49.9
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 9.1e-199 698.4 731 54.0
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 2.6e-198 696.8 744 50.4
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 6.5e-197 692.2 726 52.5
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 7.2e-196 688.7 742 52.7
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 1.6e-195 687.6 736 50.8
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 4.7e-195 686.0 639 56.0
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 2.0e-193 680.6 609 59.9
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 3.3e-193 679.9 738 49.3
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 9.7e-193 678.3 704 54.5
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 3.1e-191 673.3 742 49.3
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 4.1e-191 672.9 721 50.3
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.2e-190 671.4 727 51.7
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 2.7e-190 670.2 735 49.4
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 3.5e-190 669.8 735 49.4
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 1.3e-189 667.9 721 50.1
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.1e-188 664.8 711 50.8
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 3.0e-186 656.8 736 48.6
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 4.4e-185 652.9 733 48.4
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 6.3e-184 649.0 708 49.4
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 1.2e-182 644.8 779 46.1
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 2.3e-181 640.6 783 46.0
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 4.7e-179 632.9 701 48.2
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 4.1e-175 619.8 703 47.2
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 4.3e-172 609.8 710 48.0
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 7.3e-172 609.0 731 46.4
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 8.6e-165 585.5 745 43.9
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 2.6e-161 573.9 716 45.8
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 7.0e-159 565.8 451 66.1
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 2.5e-156 557.4 671 45.9
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 4.6e-150 536.6 582 50.0
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 7.8e-150 535.8 573 53.1
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 1.9e-148 531.2 580 53.6
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 1.3e-141 508.4 545 51.6
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 7.6e-137 492.7 729 41.6
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 3.2e-135 487.3 519 51.8
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 2.1e-134 484.6 453 57.8
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 2.1e-131 474.6 554 49.5
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 4.8e-123 446.8 581 45.4
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 7.6e-121 439.5 451 53.0
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 7.1e-119 433.0 351 62.1
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.6e-118 431.8 399 59.9
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.5e-116 425.2 425 53.4
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.9e-108 398.3 277 74.4
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.8e-106 391.7 379 56.5
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.0e-105 388.3 353 58.1
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 3.8e-104 384.0 352 59.4
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.5e-95 354.8 374 50.3
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 4.2e-95 354.0 696 32.8
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 1.6e-94 352.1 344 54.1
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 5.1e-93 347.1 329 56.2
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 2.6e-89 334.7 818 30.4
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 8.5e-88 329.7 498 43.0
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 9.7e-84 316.2 251 64.9
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 1.1e-82 312.8 852 28.6
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 5.5e-79 300.4 760 28.4
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 6.1e-78 297.0 260 60.4
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 4.0e-77 294.3 276 57.6
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 2.8e-67 261.5 193 66.8
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 2.8e-67 261.5 269 53.9
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 9.5e-63 246.5 250 51.6
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 7.8e-57 226.9 898 24.5
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 1.0e-56 226.5 709 29.8
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 2.3e-56 225.3 157 70.1
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 8.9e-53 213.4 718 29.5
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 2.2e-51 208.8 157 68.2
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 1.4e-50 206.1 155 65.2
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.1e-42 179.9 137 68.6
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.1e-37 161.8 115 66.1
CSS0032909 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 8.1e-30 137.1 139 59.0
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 5.8e-28 131.0 208 40.4
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 7.6e-28 130.6 244 40.6
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.3e-27 129.8 98 68.4
CSS0022694 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 4.2e-26 124.8 118 59.3
CSS0049266 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 1.0e-24 120.2 95 69.5
CSS0038915 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 5.1e-24 117.9 97 64.9
CSS0037956 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 6.6e-24 117.5 99 66.7
CSS0015501 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 2.8e-22 112.1 67 83.6
CSS0011986 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 1.1e-21 110.2 112 58.0
Rhsim03G0224400 Rhododendron simsii HOM05D005820 ORTHO05D007116 9.9e-20 103.6 109 59.6
CSS0023844 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 1.3e-16 93.2 75 68.0
CSS0027355 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 1.9e-15 89.4 82 61.0
CSS0036654 Camellia sinensis var. sinensis HOM05D013713 ORTHO05D000001 1.9e-15 89.4 48 89.6
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 9.6e-15 87.0 340 24.7
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 4.8e-14 84.7 155 36.1
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 1.8e-13 82.8 166 36.7
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 8.4e-11 73.9 46 73.9
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 4.6e-09 68.2 178 28.7
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 1.0e-08 67.0 61 59.0
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 1.3e-08 66.6 484 20.2
CSS0004182 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.3e-06 60.1 49 59.2


User provided reference genes

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