Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 2.0e-236 822.0 408 100.0
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 3.6e-177 625.2 406 77.3
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 3.1e-176 622.1 406 75.6
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 2.1e-169 599.4 406 73.4
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.1e-168 595.5 406 74.4
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 7.8e-164 580.9 409 69.7
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.1e-162 577.0 405 69.1
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 4.3e-162 575.1 405 68.9
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 1.6e-161 573.2 410 70.2
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.8e-161 572.4 393 74.0
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 2.8e-161 572.4 409 70.2
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 8.1e-161 570.9 405 69.6
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 1.1e-160 570.5 414 69.6
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 1.8e-160 569.7 405 70.4
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 3.1e-160 568.9 406 70.0
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 4.0e-160 568.5 408 69.1
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 5.3e-160 568.2 410 69.3
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 6.9e-160 567.8 409 69.2
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 1.5e-159 566.6 406 69.2
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 4.4e-159 565.1 406 68.7
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 2.9e-158 562.4 406 68.7
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 4.9e-158 561.6 418 67.9
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 8.4e-158 560.8 405 69.9
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 2.4e-157 559.3 408 68.4
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 3.2e-157 558.9 406 69.0
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 3.2e-157 558.9 407 67.8
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 4.2e-157 558.5 406 69.0
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 5.4e-157 558.1 405 70.6
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 9.3e-157 557.4 409 68.2
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.7e-156 555.8 393 71.5
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 3.5e-156 555.4 409 68.9
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 1.0e-155 553.9 406 68.2
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.9e-155 552.0 345 78.6
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 5.1e-155 551.6 415 66.5
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 6.6e-155 551.2 410 67.6
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 8.7e-155 550.8 420 66.0
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 9.6e-154 547.4 400 67.8
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 2.1e-153 546.2 400 67.5
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 4.8e-153 545.0 419 68.0
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 1.1e-152 543.9 410 66.6
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 3.1e-152 542.3 406 67.0
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 4.0e-152 542.0 413 66.8
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 6.9e-152 541.2 400 66.8
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 9.0e-152 540.8 409 66.3
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 2.0e-151 539.7 404 66.3
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 2.6e-151 539.3 410 66.1
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 1.3e-150 537.0 413 67.6
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 3.8e-150 535.4 404 65.3
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 4.9e-150 535.0 419 63.2
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 8.4e-150 534.3 404 64.9
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 1.1e-149 533.9 343 76.4
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.4e-149 533.5 410 66.3
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 3.2e-149 532.3 361 71.5
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 7.1e-149 531.2 409 67.0
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 7.1e-149 531.2 408 66.7
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 1.2e-148 530.4 409 63.8
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 1.6e-148 530.0 408 66.2
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.6e-148 530.0 409 66.7
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 1.6e-148 530.0 404 64.9
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.1e-148 529.6 436 63.1
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 2.7e-148 529.3 407 66.6
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.3e-147 526.9 405 66.4
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.3e-147 526.9 435 62.1
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 1.8e-147 526.6 447 60.6
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 3.9e-147 525.4 405 63.2
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 5.1e-147 525.0 345 73.6
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 1.5e-146 523.5 404 65.8
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 2.5e-146 522.7 409 64.3
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.3e-146 522.3 337 77.2
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 7.4e-146 521.2 406 64.0
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 7.4e-146 521.2 405 64.4
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 1.1e-144 517.3 451 60.8
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 1.1e-144 517.3 479 57.8
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 1.4e-144 516.9 408 62.5
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 1.8e-144 516.5 412 63.1
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 3.1e-144 515.8 414 63.0
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 3.1e-144 515.8 414 63.0
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 4.0e-144 515.4 392 64.5
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 6.9e-144 514.6 411 66.4
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 1.2e-143 513.8 384 66.7
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.2e-143 513.8 422 63.7
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.5e-143 513.5 407 62.4
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 2.0e-143 513.1 408 62.7
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 2.0e-143 513.1 408 63.0
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 7.6e-143 511.1 408 64.5
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 2.9e-142 509.2 413 62.5
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 3.8e-142 508.8 344 69.2
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 4.9e-142 508.4 409 64.8
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.1e-141 507.3 410 62.4
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 1.4e-141 506.9 411 62.3
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 1.4e-141 506.9 411 62.3
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 3.2e-141 505.8 408 61.8
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 7.1e-141 504.6 413 61.7
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 9.3e-141 504.2 408 61.3
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 2.7e-140 502.7 413 60.0
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 2.7e-140 502.7 419 61.6
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 3.5e-140 502.3 355 68.5
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 3.5e-140 502.3 412 61.4
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 3.5e-140 502.3 408 61.5
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 7.9e-140 501.1 412 61.2
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 1.3e-139 500.4 413 59.8
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 1.8e-139 500.0 412 61.4
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 1.8e-139 500.0 412 61.4
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 1.8e-139 500.0 412 61.4
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.1e-138 497.3 406 60.6
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 1.5e-138 496.9 340 71.8
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 1.1e-136 490.7 439 58.1
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 1.2e-135 487.3 407 60.2
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 2.0e-135 486.5 345 69.3
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 2.2e-134 483.0 345 67.8
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 6.5e-134 481.5 347 67.7
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 1.4e-133 480.3 407 61.4
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.2e-133 479.2 390 61.0
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 3.2e-133 479.2 406 60.1
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 5.5e-133 478.4 351 66.4
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 6.0e-132 474.9 392 61.0
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 6.7e-131 471.5 342 67.3
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 2.5e-130 469.5 345 66.7
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 1.3e-129 467.2 405 59.5
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 5.0e-126 455.3 408 56.9
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 7.2e-125 451.4 400 57.5
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 6.3e-121 438.3 412 54.1
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 1.2e-119 434.1 318 67.9
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 1.3e-118 430.6 398 56.0
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 1.2e-116 424.1 291 73.2
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 1.8e-115 420.2 328 64.3
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 9.4e-101 371.3 410 47.6
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 1.0e-91 341.3 327 51.1
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 4.0e-91 339.3 323 49.8
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 8.8e-91 338.2 363 46.3
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 7.7e-87 325.1 303 54.1
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 1.3e-86 324.3 196 78.6
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 3.8e-86 322.8 340 48.2
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 6.8e-83 312.0 219 69.9
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 1.5e-74 284.3 247 59.5
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 3.4e-74 283.1 275 49.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.7e-73 280.8 346 47.4
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 1.1e-67 261.5 272 51.8
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 4.9e-49 199.5 188 57.4
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.1e-45 188.3 178 52.2
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 1.1e-45 188.3 293 38.9
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 6.2e-44 182.6 156 56.4
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 6.6e-38 162.5 322 32.6
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 1.2e-31 141.7 112 65.2
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 1.3e-30 138.3 113 61.1
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 7.4e-29 132.5 350 30.3
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.5e-26 124.8 77 76.6
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 4.2e-24 116.7 61 85.2
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.3e-22 111.7 92 59.8
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 6.2e-20 102.8 59 74.6
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 6.9e-19 99.4 61 75.4
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.2e-18 98.6 80 55.0
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 5.0e-17 93.2 130 40.8
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 8.4e-17 92.4 68 66.2
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 3.3e-13 80.5 69 63.8
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 9.7e-13 79.0 129 39.5
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 6.9e-11 72.8 120 40.8
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 9.0e-11 72.4 55 63.6
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 9.4e-08 62.4 95 43.2
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 6.1e-07 59.7 146 30.1
FvH4_1g12460 Fragaria vesca HOM05D000363 ORTHO05D000236 1.8e-06 58.2 157 28.7
FAN19G0327 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.8e-06 58.2 157 28.7
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 2.3e-06 57.8 76 38.2
MD15G1252000 Malus domestica HOM05D000363 ORTHO05D000236 2.3e-06 57.8 76 38.2
PSO170G0672 Papaver somniferum HOM05D000363 ORTHO05D000236 2.3e-06 57.8 146 31.5
PSO170G6498 Papaver somniferum HOM05D000363 ORTHO05D000236 3.0e-06 57.4 146 30.8
AagrBONN_evm.TU.Sc2ySwM_362.2316 Anthoceros agrestis HOM05D000363 ORTHO05D000236 3.9e-06 57.0 146 29.5
PSO407G0113 Papaver somniferum HOM05D000363 ORTHO05D000236 3.9e-06 57.0 146 30.8
PSO444G0001 Papaver somniferum HOM05D000363 ORTHO05D000236 3.9e-06 57.0 146 30.8
FAN23G1427 Fragaria x ananassa HOM05D000363 ORTHO05D000236 5.1e-06 56.6 157 28.7
Gorai.007G199500 Gossypium raimondii HOM05D000363 ORTHO05D000236 5.1e-06 56.6 149 30.2
RcHm_v2.0_Chr2g0100321 Rosa chinensis HOM05D000363 ORTHO05D000236 5.1e-06 56.6 157 28.0
MD02G1138500 Malus domestica HOM05D000363 ORTHO05D000236 6.7e-06 56.2 76 38.2
QL11p045365 Quercus lobata HOM05D000363 ORTHO05D000236 8.8e-06 55.8 146 31.5


User provided reference genes

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