Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 9.5e-155 550.1 263 100.0
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 8.4e-119 430.6 261 77.8
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 3.9e-116 421.8 263 76.0
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 6.7e-116 421.0 264 73.9
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 4.1e-113 411.8 263 74.5
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 1.1e-110 403.7 263 74.1
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.4e-110 403.3 199 96.0
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 4.2e-110 401.7 263 71.5
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.1e-93 344.7 232 71.1
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 1.0e-92 344.0 263 62.4
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.6e-91 339.3 253 66.0
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 4.4e-91 338.6 263 60.8
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 4.8e-90 335.1 264 61.4
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 4.8e-90 335.1 266 60.9
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 4.5e-88 328.6 261 59.8
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.7e-87 326.6 266 59.0
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.2e-86 322.4 266 59.0
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 4.7e-85 318.5 268 58.2
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.4e-84 317.0 252 59.5
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.8e-84 316.6 265 59.2
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.8e-84 316.6 260 57.3
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.3e-84 316.2 265 59.6
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 3.0e-84 315.8 250 60.8
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 4.0e-84 315.5 268 58.6
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 5.2e-84 315.1 258 61.6
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.2e-83 313.9 265 58.5
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.7e-83 310.8 265 58.9
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 1.3e-82 310.5 265 57.7
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 2.8e-82 309.3 265 57.4
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.7e-82 308.9 253 56.9
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 6.3e-82 308.1 267 59.6
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 8.2e-82 307.8 262 55.0
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 1.1e-81 307.4 253 58.9
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.1e-81 307.4 265 57.4
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.4e-81 306.2 262 54.6
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 4.1e-81 305.4 265 57.0
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 5.3e-81 305.1 267 57.7
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 7.0e-81 304.7 267 57.7
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.6e-80 303.5 192 72.9
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.6e-80 303.5 252 58.7
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 3.5e-80 302.4 268 59.0
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 3.5e-80 302.4 267 56.6
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 4.5e-80 302.0 268 57.1
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.9e-80 301.6 264 57.2
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.9e-80 301.6 263 57.4
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 7.7e-80 301.2 264 57.6
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 1.3e-79 300.4 269 54.6
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.3e-79 300.4 268 55.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 2.9e-79 299.3 266 56.0
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 5.0e-79 298.5 268 56.3
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.9e-78 296.6 268 56.3
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 2.5e-78 296.2 265 55.1
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.2e-78 295.4 263 56.7
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 4.2e-78 295.4 266 55.6
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 2.7e-77 292.7 251 57.0
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 8.0e-77 291.2 267 55.4
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.4e-76 290.4 269 53.2
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 2.3e-76 289.7 254 55.1
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 3.0e-76 289.3 251 57.8
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 4.0e-76 288.9 270 51.5
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 1.3e-74 283.9 219 60.3
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.7e-74 283.5 250 53.6
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 3.7e-74 282.3 238 53.4
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 6.3e-74 281.6 252 53.6
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 6.3e-74 281.6 251 57.8
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 8.3e-74 281.2 255 55.3
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 8.3e-74 281.2 239 56.5
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 1.1e-73 280.8 267 53.9
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.1e-73 280.8 249 56.2
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 3.1e-73 279.3 244 55.7
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.4e-73 278.5 246 55.3
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.3e-71 273.9 268 52.2
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.9e-71 272.7 246 54.5
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 3.8e-71 272.3 246 54.9
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 3.8e-71 272.3 250 54.8
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.1e-70 270.8 266 50.8
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 4.2e-70 268.9 264 50.8
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 5.5e-70 268.5 268 52.2
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 7.2e-70 268.1 241 53.1
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 7.2e-70 268.1 179 77.1
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.6e-69 266.9 266 50.8
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.8e-69 266.2 213 60.1
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 2.8e-69 266.2 265 49.8
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 4.7e-69 265.4 255 51.4
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 6.1e-69 265.0 264 49.6
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.3e-68 263.1 264 50.4
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 3.0e-68 262.7 257 50.2
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 3.0e-68 262.7 211 60.7
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 5.2e-68 261.9 243 55.1
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 6.8e-68 261.5 264 50.4
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 6.8e-68 261.5 245 53.5
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 1.5e-67 260.4 263 49.0
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 1.5e-67 260.4 263 49.0
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 1.5e-67 260.4 263 49.0
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.5e-67 260.4 267 49.8
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 2.0e-67 260.0 228 55.7
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 5.7e-67 258.5 264 48.1
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 9.8e-67 257.7 262 48.9
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 9.8e-67 257.7 264 47.0
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 1.7e-66 256.9 267 47.9
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 8.3e-66 254.6 232 53.9
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 2.4e-65 253.1 265 47.9
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 2.4e-65 253.1 265 47.9
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 3.1e-65 252.7 265 48.3
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 3.1e-65 252.7 265 48.3
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 7.0e-65 251.5 253 52.6
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 9.2e-65 251.1 268 49.6
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.6e-64 250.4 253 52.6
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 2.0e-64 250.0 274 50.7
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 2.7e-64 249.6 285 45.6
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.3e-63 247.3 273 50.5
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 2.3e-63 246.5 312 43.9
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.9e-63 246.1 242 50.0
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 5.0e-63 245.4 285 44.9
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 1.1e-62 244.2 251 51.0
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.5e-62 243.8 238 50.4
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 1.9e-62 243.4 201 57.7
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 3.3e-62 242.7 214 53.7
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 4.3e-62 242.3 254 46.9
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 1.6e-61 240.4 251 46.6
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 3.6e-61 239.2 286 45.8
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.7e-61 238.8 210 54.8
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 6.1e-61 238.4 210 50.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.0e-61 238.0 223 52.9
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 2.3e-60 236.5 261 46.0
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 8.9e-60 234.6 222 53.2
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 8.9e-60 234.6 252 46.4
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 5.7e-59 231.9 265 46.8
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.3e-58 230.7 265 44.9
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.3e-58 230.7 273 46.5
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 4.9e-58 228.8 211 54.0
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 8.3e-58 228.0 286 43.7
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 5.4e-57 225.3 271 44.3
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.2e-56 224.2 178 59.0
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.6e-56 223.8 219 47.9
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.0e-56 223.4 211 50.7
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.0e-56 223.4 245 46.5
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 2.7e-56 223.0 309 42.1
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.7e-55 220.3 234 49.6
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 3.9e-55 219.2 267 46.4
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 9.5e-54 214.5 173 60.1
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 3.6e-53 212.6 263 43.7
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 1.8e-52 210.3 159 61.6
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 8.9e-52 208.0 283 42.4
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 8.9e-52 208.0 170 57.6
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 5.8e-51 205.3 178 54.5
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 1.2e-45 187.6 233 44.6
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.2e-45 187.6 248 43.1
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.8e-44 183.7 151 60.3
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 8.9e-44 181.4 264 42.4
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.7e-42 177.2 244 41.4
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.9e-41 173.7 165 49.7
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 3.2e-41 172.9 221 42.1
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 2.7e-40 169.9 182 47.3
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 3.0e-39 166.4 320 30.6
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.5e-38 164.1 221 38.9
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 1.9e-38 163.7 302 31.8
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.6e-37 160.6 219 42.5
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.1e-36 156.4 125 60.0
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.4e-33 147.5 236 36.4
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 2.4e-33 146.7 240 37.1
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.2e-33 146.4 133 57.1
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 4.1e-33 146.0 229 36.7
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.4e-28 131.0 85 67.1
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 5.2e-28 129.0 165 41.8
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 2.9e-26 123.2 264 33.7
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 2.9e-26 123.2 135 48.1
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.8e-26 122.9 194 40.7
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 6.4e-26 122.1 79 70.9
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 5.6e-22 109.0 159 37.1
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.8e-20 104.0 92 52.2
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.6e-19 100.1 87 58.6
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 2.2e-18 97.1 62 64.5
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 1.4e-17 94.4 73 57.5
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 7.1e-17 92.0 120 43.3
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 1.2e-16 91.3 146 38.4
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 2.1e-16 90.5 47 83.0
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 1.1e-14 84.7 107 43.9
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-14 83.6 120 35.8
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 3.7e-13 79.7 87 47.1
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.5e-11 74.3 74 51.4
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 7.6e-11 72.0 45 71.1
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 4.6e-08 62.8 43 62.8
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.0e-07 61.6 53 52.8
CsaV3_3G040730 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.1e-06 58.2 64 53.1
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.1e-06 58.2 65 49.2
Mapoly0119s0049 Marchantia polymorpha HOM05D003612 ORTHO05D004323 3.3e-06 56.6 94 34.0


User provided reference genes

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