Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035700 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 2.1e-121 439.1 228 100.0
CSS0017753 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 4.5e-92 341.7 269 74.7
CSS0024515 Camellia sinensis var. sinensis HOM05D003597 ORTHO05D004420 3.2e-50 202.6 164 70.7
Actinidia23041 Actinidia chinensis HOM05D003597 ORTHO05D004420 2.8e-46 189.5 163 66.9
Rhsim06G0109200 Rhododendron simsii HOM05D003597 ORTHO05D004420 3.2e-42 176.0 169 61.5
vmacro12529 Vaccinium macrocarpon HOM05D003597 ORTHO05D004420 9.8e-39 164.5 176 58.5
GSVIVG01008944001 Vitis vinifera HOM05D003597 ORTHO05D004420 1.6e-36 157.1 165 59.4
DCAR_014282 Daucus carota HOM05D003597 ORTHO05D004420 1.7e-35 153.7 165 57.6
Cc00_g02330 Coffea canephora HOM05D003597 ORTHO05D004420 1.1e-34 151.0 158 57.0
Aqoxy5G02474 Aquilegia oxysepala HOM05D003597 ORTHO05D004420 1.2e-33 147.5 165 56.4
Migut.C01191 Erythranthe guttata HOM05D003597 ORTHO05D004420 1.6e-33 147.1 164 56.7
MBI03_g11136_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 8.0e-33 144.8 158 58.2
SalBow7G0935 Salvia bowleyana HOM05D003597 ORTHO05D004420 1.8e-32 143.7 164 53.0
SalBow7G4807 Salvia bowleyana HOM05D003597 ORTHO05D004420 1.8e-32 143.7 164 53.0
Oeu030027.4 Olea europaea HOM05D003597 ORTHO05D004420 5.2e-32 142.1 165 53.9
Nitab4.5_0000051g0110 Nicotiana tabacum HOM05D003597 ORTHO05D004420 6.8e-32 141.7 165 54.5
Nitab4.5_0002496g0040 Nicotiana tabacum HOM05D003597 ORTHO05D004420 6.8e-32 141.7 165 54.5
SGA_v2.0_scaffold118G32437 Striga asiatica HOM05D003597 ORTHO05D004420 6.8e-32 141.7 165 55.2
Cpa.g.c31003 Carica papaya HOM05D003597 ORTHO05D004420 1.2e-31 141.0 164 56.7
Cfa015958 Carpinus fangiana HOM05D003597 ORTHO05D004420 2.6e-31 139.8 160 58.8
Lj4C579G4 Lonicera japonica HOM05D003597 ORTHO05D004420 3.4e-31 139.4 150 58.7
Manes.18G072800 Manihot esculenta HOM05D003597 ORTHO05D004420 4.4e-31 139.0 163 52.1
Peaxi162Scf00476g00039 Petunia axillaris HOM05D003597 ORTHO05D004420 5.7e-31 138.7 165 52.7
Potri.002G089400 Populus trichocarpa HOM05D003597 ORTHO05D004420 5.7e-31 138.7 164 52.4
Haze_00525 Corylus avellana HOM05D003597 ORTHO05D004420 9.8e-31 137.9 160 58.1
MSTRG.25418 Avicennia marina HOM05D003597 ORTHO05D004420 4.9e-30 135.6 163 53.4
Oeu043794.4 Olea europaea HOM05D003597 ORTHO05D004420 8.3e-30 134.8 164 52.4
Potri.005G171800 Populus trichocarpa HOM05D003597 ORTHO05D004420 1.8e-29 133.7 164 50.6
Atru.chr13.1317 Acer truncatum HOM05D003597 ORTHO05D004420 3.2e-29 132.9 164 51.2
Atru.chr13.1361 Acer truncatum HOM05D003597 ORTHO05D004420 3.2e-29 132.9 164 51.2
DCAR_031233 Daucus carota HOM05D003597 ORTHO05D004420 4.1e-29 132.5 159 52.2
SGA_v2.0_scaffold24G10505 Striga asiatica HOM05D003597 ORTHO05D004420 4.1e-29 132.5 142 57.7
TAR197G0005 Trochodendron aralioides HOM05D003597 ORTHO05D004420 4.1e-29 132.5 165 53.9
Thecc.08G116700 Theobroma cacao HOM05D003597 ORTHO05D004420 5.4e-29 132.1 164 53.7
Solyc11g013530.3 Solanum lycopersicum HOM05D003597 ORTHO05D004420 7.0e-29 131.7 165 53.3
Sopen11g008560 Solanum pennellii HOM05D003597 ORTHO05D004420 7.0e-29 131.7 165 53.3
Nn5g27956 Nelumbo nucifera HOM05D003597 ORTHO05D004420 1.2e-28 131.0 164 48.2
Sabra05G0129300 Salix brachista HOM05D003597 ORTHO05D004420 1.2e-28 131.0 164 50.0
PSO017G6492 Papaver somniferum HOM05D003597 ORTHO05D004420 3.5e-28 129.4 165 53.9
PSO170G0537 Papaver somniferum HOM05D003597 ORTHO05D004420 4.6e-28 129.0 165 53.9
Hund27061 Selenicereus undatus HOM05D003597 ORTHO05D004420 4.6e-28 129.0 164 50.6
CAN.G255.18 Capsicum annuum HOM05D003597 ORTHO05D004420 5.9e-28 128.6 165 52.1
COL.COLO4_03393 Corchorus olitorius HOM05D003597 ORTHO05D004420 2.3e-27 126.7 164 51.2
MBI06_g01044_MAGBIO Magnolia biondii HOM05D003597 ORTHO05D004420 2.3e-27 126.7 160 51.9
Duzib041G0227 Durio zibethinus HOM05D003597 ORTHO05D004420 2.9e-27 126.3 164 51.8
Sabra02G0070400 Salix brachista HOM05D003597 ORTHO05D004420 2.9e-27 126.3 150 54.0
Gorai.002G220300 Gossypium raimondii HOM05D003597 ORTHO05D004420 6.6e-27 125.2 164 51.8
Sc01g0001560 Simmondsia chinensis HOM05D003597 ORTHO05D004420 6.6e-27 125.2 163 49.7
Prupe.1G506100 Prunus persica HOM05D003597 ORTHO05D004420 1.1e-26 124.4 153 52.9
QL12p035319 Quercus lobata HOM05D003597 ORTHO05D004420 1.5e-26 124.0 154 53.2
TWI36G0588 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 4.3e-26 122.5 164 52.4
Gohir.D01G182100 Gossypium hirsutum HOM05D003597 ORTHO05D004420 7.3e-26 121.7 164 50.6
Carub.0002s2470 Capsella rubella HOM05D003597 ORTHO05D004420 9.5e-26 121.3 167 47.9
Gohir.A01G187600 Gossypium hirsutum HOM05D003597 ORTHO05D004420 1.2e-25 120.9 164 51.2
EL10Ac1g00040 Beta vulgaris HOM05D003597 ORTHO05D004420 3.6e-25 119.4 163 50.9
Phvul.009G025800 Phaseolus vulgaris HOM05D003597 ORTHO05D004420 4.7e-25 119.0 165 50.3
RcHm_v2.0_Chr7g0240911 Rosa chinensis HOM05D003597 ORTHO05D004420 6.1e-25 118.6 153 49.7
CiPaw.05G229100 Carya illinoinensis HOM05D003597 ORTHO05D004420 8.0e-25 118.2 159 52.2
Lalb_Chr08g0241721 Lupinus albus HOM05D003597 ORTHO05D004420 8.0e-25 118.2 158 50.6
VMungo1309G0254 Vigna mungo HOM05D003597 ORTHO05D004420 8.0e-25 118.2 165 49.7
Glyma.04G253800 Glycine max HOM05D003597 ORTHO05D004420 1.4e-24 117.5 165 49.1
arahy.Tifrunner.gnm1.ann1.WJPD8A Arachis hypogaea HOM05D003597 ORTHO05D004420 2.3e-24 116.7 161 50.3
MSTRG.1487 Avicennia marina HOM05D003597 ORTHO05D004420 2.3e-24 116.7 140 52.9
Eucgr.F03741 Eucalyptus grandis HOM05D003597 ORTHO05D004420 4.0e-24 115.9 169 45.6
Glyma.06G108500 Glycine max HOM05D003597 ORTHO05D004420 4.0e-24 115.9 165 47.9
Gorai.010G047000 Gossypium raimondii HOM05D003597 ORTHO05D004420 4.0e-24 115.9 164 50.6
Duzib093G1782 Durio zibethinus HOM05D003597 ORTHO05D004420 6.8e-24 115.2 164 50.6
Gohir.D06G041800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 6.8e-24 115.2 164 50.6
TWI56G1037 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 6.8e-24 115.2 164 50.6
ECA246G2386 Erigeron canadensis HOM05D003597 ORTHO05D004420 1.2e-23 114.4 157 47.1
Ciclev10000027m.g Citrus clementina HOM05D003597 ORTHO05D004420 2.0e-23 113.6 147 50.3
TWI12G1217 Tripterygium wilfordii HOM05D003597 ORTHO05D004420 2.0e-23 113.6 167 53.3
Gohir.A06G040800 Gossypium hirsutum HOM05D003597 ORTHO05D004420 2.6e-23 113.2 164 50.0
AUR62023609 Chenopodium quinoa HOM05D003597 ORTHO05D004420 3.4e-23 112.8 159 48.4
FAN18G1206 Fragaria x ananassa HOM05D003597 ORTHO05D004420 3.4e-23 112.8 158 46.8
Medtr3g073320 Medicago truncatula HOM05D003597 ORTHO05D004420 3.4e-23 112.8 167 48.5
Ca_25762_v3 Cicer arietinum L. HOM05D003597 ORTHO05D004420 4.4e-23 112.5 167 47.9
FAN13G2877 Fragaria x ananassa HOM05D003597 ORTHO05D004420 4.4e-23 112.5 158 47.5
ClCG03G009090 Citrullus lanatus HOM05D003597 ORTHO05D004420 5.8e-23 112.1 164 48.2
FvH4_5g38940 Fragaria vesca HOM05D003597 ORTHO05D004420 5.8e-23 112.1 158 46.8
AL2G38040 Arabidopsis lyrata HOM05D003597 ORTHO05D004420 1.3e-22 110.9 168 45.2
Lj1g0013609 Lotus japonicus HOM05D003597 ORTHO05D004420 1.7e-22 110.5 167 48.5
MELO3C022786.2 Cucumis melo HOM05D003597 ORTHO05D004420 2.9e-22 109.8 163 46.6
FAN04G0001 Fragaria x ananassa HOM05D003597 ORTHO05D004420 4.9e-22 109.0 164 43.9
Sed0005676 Sechium edule HOM05D003597 ORTHO05D004420 4.9e-22 109.0 187 42.8
HanXRQChr05g0150511 Helianthus annuus HOM05D003597 ORTHO05D004420 8.3e-22 108.2 161 45.3
Thhalv10018012m.g Eutrema salsugineum HOM05D003597 ORTHO05D004420 1.4e-21 107.5 159 45.9
TPR.G32944 Trifolium pratense HOM05D003597 ORTHO05D004420 1.4e-21 107.5 167 47.9
AUR62004693 Chenopodium quinoa HOM05D003597 ORTHO05D004420 1.9e-21 107.1 159 47.2
CsaV3_5G023530 Cucumis sativus L. HOM05D003597 ORTHO05D004420 1.9e-21 107.1 163 45.4
AT1G77800 Arabidopsis thaliana HOM05D003597 ORTHO05D004420 2.4e-21 106.7 168 44.6
MD08G1173200 Malus domestica HOM05D003597 ORTHO05D004420 2.4e-21 106.7 159 50.3
THA.LOC104800176 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 2.4e-21 106.7 168 47.0
Aa31LG4G7900 Aethionema arabicum HOM05D003597 ORTHO05D004420 1.2e-20 104.4 169 46.2
Sp5g32980 Schrenkiella parvula HOM05D003597 ORTHO05D004420 1.2e-20 104.4 169 43.8
CANSAT25G1161 Cannabis sativa HOM05D003597 ORTHO05D004420 2.0e-20 103.6 168 45.8
THA.LOC104813639 Tarenaya hassleriana HOM05D003597 ORTHO05D004420 1.3e-19 100.9 168 44.0
BcaB03g15920 Brassica carinata HOM05D003597 ORTHO05D004420 1.7e-19 100.5 168 45.8
BcaB05g25080 Brassica carinata HOM05D003597 ORTHO05D004420 1.7e-19 100.5 158 44.3
A07p43090 Brassica napus HOM05D003597 ORTHO05D004420 2.3e-19 100.1 168 45.2
BcaC03g15776 Brassica carinata HOM05D003597 ORTHO05D004420 3.0e-19 99.8 158 44.3
Ah.05g172620 Amaranthus hybridus HOM05D003597 ORTHO05D004420 6.6e-19 98.6 159 43.4
C02p35180 Brassica napus HOM05D003597 ORTHO05D004420 8.6e-19 98.2 158 43.0
A02p21890 Brassica napus HOM05D003597 ORTHO05D004420 1.5e-18 97.4 158 43.0
BcaC08g47623 Brassica carinata HOM05D003597 ORTHO05D004420 1.9e-18 97.1 168 44.0
C06p51740 Brassica napus HOM05D003597 ORTHO05D004420 1.9e-18 97.1 168 44.0
arahy.Tifrunner.gnm1.ann1.Y09WXD Arachis hypogaea HOM05D003597 ORTHO05D004420 2.5e-18 96.7 143 49.0
MD15G1358500 Malus domestica HOM05D003597 ORTHO05D004420 2.5e-18 96.7 158 48.1
BolC2t09533H Brassica oleracea HOM05D003597 ORTHO05D004420 5.6e-18 95.5 159 44.0
BraA07t31831Z Brassica rapa HOM05D003597 ORTHO05D004420 5.6e-18 95.5 169 42.6
Lsat_1_v5_gn_6_109621 Lactuca sativa HOM05D003597 ORTHO05D004420 5.6e-18 95.5 152 46.7
BolC6t40196H Brassica oleracea HOM05D003597 ORTHO05D004420 1.6e-17 94.0 169 42.0
BraA02t07190Z Brassica rapa HOM05D003597 ORTHO05D004420 3.6e-17 92.8 159 42.8
Lalb_Chr17g0344031 Lupinus albus HOM05D003597 ORTHO05D004420 1.1e-16 91.3 160 45.0
PGR042G3777 Punica granatum HOM05D003597 ORTHO05D004420 1.1e-16 91.3 162 46.9
CARHR071300 Cardamine hirsuta HOM05D003597 ORTHO05D004420 1.8e-16 90.5 150 42.7
unitig_0.g2128 Utricularia gibba HOM05D003597 ORTHO05D004420 8.9e-16 88.2 161 43.5
HPP92_004120 Vanilla planifolia HOM05D003597 ORTHO05D004420 3.4e-15 86.3 159 40.9
Lalb_Chr11g0065691 Lupinus albus HOM05D003597 ORTHO05D004420 9.8e-15 84.7 141 44.0
Dinv27384 Davidia involucrata HOM05D003597 ORTHO05D004420 1.1e-13 81.3 126 48.4
ATR0121G011 Amborella trichopoda HOM05D003597 ORTHO05D004420 1.6e-12 77.4 167 35.9
CDE06G1078 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 1.6e-12 77.4 168 39.3
CDE06G0857 Ceratophyllum demersum HOM05D003597 ORTHO05D004420 3.5e-12 76.3 166 38.6
Zm00001eb193530 Zea mays HOM05D003597 ORTHO05D004420 4.6e-12 75.9 132 43.2
SHI48839 Sapria himalayana HOM05D003597 ORTHO05D004420 7.8e-12 75.1 164 35.4
Zm00001eb256170 Zea mays HOM05D003597 ORTHO05D004420 5.6e-10 68.9 132 40.2
Manes.02G158666 Manihot esculenta HOM05D003597 ORTHO05D004420 7.6e-07 58.5 63 55.6
HPP92_004068 Vanilla planifolia HOM05D003597 ORTHO05D004420 7.6e-07 58.5 159 33.3


User provided reference genes

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