Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.7e-37 156.4 66 100.0
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 9.8e-24 112.8 66 75.8
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.0e-20 100.5 66 71.2
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.6e-18 95.5 71 63.4
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 8.9e-17 89.7 52 73.1
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.5e-16 89.0 52 71.2
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.5e-16 89.0 52 71.2
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.5e-16 89.0 52 71.2
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.5e-16 89.0 47 78.7
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 1.5e-16 89.0 47 78.7
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 2.0e-16 88.6 52 71.2
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 2.0e-16 88.6 52 71.2
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 2.0e-16 88.6 52 71.2
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.0e-16 88.6 52 71.2
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.0e-16 88.6 52 71.2
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 2.0e-16 88.6 52 71.2
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 2.0e-16 88.6 52 71.2
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 2.0e-16 88.6 52 71.2
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 2.0e-16 88.6 52 71.2
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 2.6e-16 88.2 52 71.2
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 3.4e-16 87.8 60 63.3
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 4.4e-16 87.4 47 76.6
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.4e-16 87.4 52 69.2
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.4e-16 87.4 52 69.2
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 4.4e-16 87.4 52 69.2
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 4.4e-16 87.4 52 69.2
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 5.7e-16 87.0 52 69.2
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 5.7e-16 87.0 52 69.2
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 5.7e-16 87.0 52 69.2
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 5.7e-16 87.0 52 69.2
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 5.7e-16 87.0 52 69.2
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 7.5e-16 86.7 52 69.2
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 7.5e-16 86.7 52 69.2
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 7.5e-16 86.7 52 69.2
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 67.3
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 9.8e-16 86.3 52 69.2
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 1.3e-15 85.9 52 67.3
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.3e-15 85.9 52 69.2
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.3e-15 85.9 52 69.2
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.3e-15 85.9 52 69.2
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.3e-15 85.9 52 69.2
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 1.3e-15 85.9 52 69.2
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 1.3e-15 85.9 52 69.2
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 1.7e-15 85.5 52 67.3
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.7e-15 85.5 47 74.5
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.7e-15 85.5 47 74.5
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 1.7e-15 85.5 47 74.5
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 1.7e-15 85.5 47 74.5
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 1.7e-15 85.5 52 69.2
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 1.7e-15 85.5 52 69.2
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 1.7e-15 85.5 47 74.5
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 2.2e-15 85.1 52 69.2
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 2.2e-15 85.1 52 69.2
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.2e-15 85.1 52 69.2
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 2.2e-15 85.1 52 69.2
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 2.2e-15 85.1 52 69.2
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.2e-15 85.1 47 74.5
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 2.8e-15 84.7 52 69.2
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 2.8e-15 84.7 52 67.3
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 2.8e-15 84.7 47 74.5
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 2.8e-15 84.7 47 74.5
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 2.8e-15 84.7 47 74.5
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 2.8e-15 84.7 47 74.5
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 2.8e-15 84.7 47 74.5
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.7e-15 84.3 52 67.3
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 3.7e-15 84.3 52 65.4
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 3.7e-15 84.3 52 67.3
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 3.7e-15 84.3 47 72.3
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 3.7e-15 84.3 47 72.3
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 3.7e-15 84.3 47 74.5
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 4.9e-15 84.0 51 68.6
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 4.9e-15 84.0 51 68.6
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 4.9e-15 84.0 52 67.3
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 4.9e-15 84.0 52 67.3
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 4.9e-15 84.0 47 72.3
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 4.9e-15 84.0 47 72.3
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 6.3e-15 83.6 52 67.3
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 6.3e-15 83.6 52 65.4
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 6.3e-15 83.6 52 67.3
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 8.3e-15 83.2 52 65.4
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 1.1e-14 82.8 52 63.5
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.1e-14 82.8 52 65.4
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 1.4e-14 82.4 52 65.4
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 1.4e-14 82.4 52 65.4
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.4e-14 82.4 52 65.4
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.4e-14 82.4 52 65.4
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.4e-14 82.4 52 65.4
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.4e-14 82.4 52 65.4
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.4e-14 82.4 52 65.4
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.4e-14 82.4 52 65.4
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 1.4e-14 82.4 52 65.4
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.8e-14 82.0 47 68.1
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 1.8e-14 82.0 52 65.4
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.4e-14 81.6 47 70.2
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 3.1e-14 81.3 47 70.2
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 3.1e-14 81.3 52 63.5
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 3.1e-14 81.3 47 70.2
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 3.1e-14 81.3 52 63.5
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 4.1e-14 80.9 52 63.5
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 4.1e-14 80.9 47 70.2
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.4e-14 80.5 50 64.0
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 7.0e-14 80.1 47 68.1
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 1.2e-13 79.3 47 66.0
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.5e-13 77.8 47 63.8
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.5e-13 77.4 47 63.8
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.5e-08 62.4 34 70.6
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 5.8e-08 60.5 25 88.0
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.5e-08 60.1 33 69.7
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 7.5e-08 60.1 41 65.9
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 2.2e-07 58.5 24 87.5
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.9e-07 58.2 24 87.5


User provided reference genes

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