Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035663 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D018183 1.3e-48 196.1 95 100.0
CSS0012463 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D018183 6.3e-48 193.7 95 98.9
CSS0012386 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D018183 1.7e-37 159.1 95 84.2
CSS0031364 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D018183 4.8e-16 87.8 95 57.9
BcaB07g33627 Brassica carinata HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
BcaC01g01290 Brassica carinata HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
BcaC08g43331 Brassica carinata HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
A06p02300 Brassica napus HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
A08p02550 Brassica napus HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
C03p90260 Brassica napus HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
C06p06860 Brassica napus HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
BolC3t21348H Brassica oleracea HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
BolC6t35793H Brassica oleracea HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
BraA06t23436Z Brassica rapa HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
BraA08t32295Z Brassica rapa HOM05D004014 ORTHO05D005890 4.5e-14 81.3 77 57.1
Carub.0001s4058 Capsella rubella HOM05D004014 ORTHO05D005890 1.0e-13 80.1 77 55.8
AL1G59650 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 2.3e-13 79.0 77 54.5
Sp3g19320 Schrenkiella parvula HOM05D004014 ORTHO05D005890 2.3e-13 79.0 76 55.3
CSS0027279 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 3.8e-13 78.2 47 78.7
Rhsim12G0204700 Rhododendron simsii HOM05D004014 ORTHO05D005890 3.8e-13 78.2 47 78.7
CSS0031715 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 5.0e-13 77.8 47 76.6
AT1G51710 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 6.5e-13 77.4 77 53.2
CARHR041870 Cardamine hirsuta HOM05D004014 ORTHO05D005890 8.6e-13 77.0 47 72.3
Ciclev10025482m.g Citrus clementina HOM05D004014 ORTHO05D005890 1.9e-12 75.9 47 74.5
vmacro16995 Vaccinium macrocarpon HOM05D004014 ORTHO05D005890 1.9e-12 75.9 47 76.6
Dinv37931 Davidia involucrata HOM05D004014 ORTHO05D005890 2.5e-12 75.5 47 74.5
AL3G35320 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 3.2e-12 75.1 77 51.9
CiPaw.02G141900 Carya illinoinensis HOM05D004014 ORTHO05D005890 4.2e-12 74.7 47 74.5
Lj5A49T39 Lonicera japonica HOM05D004014 ORTHO05D005890 4.2e-12 74.7 47 76.6
Dinv30396 Davidia involucrata HOM05D004014 ORTHO05D005890 5.5e-12 74.3 47 74.5
Actinidia09020 Actinidia chinensis HOM05D004014 ORTHO05D005890 7.2e-12 73.9 47 76.6
Duzib160G0604 Durio zibethinus HOM05D004014 ORTHO05D005890 7.2e-12 73.9 47 72.3
Lalb_Chr25g0280531 Lupinus albus HOM05D004014 ORTHO05D005890 7.2e-12 73.9 47 72.3
TWI79G1365 Tripterygium wilfordii HOM05D004014 ORTHO05D005890 7.2e-12 73.9 47 72.3
Actinidia39122 Actinidia chinensis HOM05D004014 ORTHO05D005890 9.5e-12 73.6 47 76.6
Thhalv10020636m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 9.5e-12 73.6 77 51.9
PSO063G2767 Papaver somniferum HOM05D004014 ORTHO05D005890 9.5e-12 73.6 47 74.5
Prupe.3G052400 Prunus persica HOM05D004014 ORTHO05D005890 9.5e-12 73.6 53 67.9
Sabra01G0156400 Salix brachista HOM05D004014 ORTHO05D005890 9.5e-12 73.6 37 86.5
GSVIVG01016888001 Vitis vinifera HOM05D004014 ORTHO05D005890 9.5e-12 73.6 47 72.3
COL.COLO4_30610 Corchorus olitorius HOM05D004014 ORTHO05D005890 1.2e-11 73.2 47 72.3
Lsat_1_v5_gn_1_36421 Lactuca sativa HOM05D004014 ORTHO05D005890 1.2e-11 73.2 47 74.5
MD09G1195900 Malus domestica HOM05D004014 ORTHO05D005890 1.2e-11 73.2 47 74.5
MD17G1176500 Malus domestica HOM05D004014 ORTHO05D005890 1.2e-11 73.2 47 74.5
CANSAT56G3696 Cannabis sativa HOM05D004014 ORTHO05D005890 1.6e-11 72.8 47 72.3
ECA232G4630 Erigeron canadensis HOM05D004014 ORTHO05D005890 1.6e-11 72.8 47 72.3
PSO832G1047 Papaver somniferum HOM05D004014 ORTHO05D005890 1.6e-11 72.8 47 72.3
AT3G21280 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 2.1e-11 72.4 77 50.6
CDE07G0617 Ceratophyllum demersum HOM05D004014 ORTHO05D005890 2.1e-11 72.4 53 66.0
Lalb_Chr04g0263081 Lupinus albus HOM05D004014 ORTHO05D005890 2.1e-11 72.4 47 72.3
Hund00756 Selenicereus undatus HOM05D004014 ORTHO05D005890 2.1e-11 72.4 47 68.1
EL10Ac2g03344 Beta vulgaris HOM05D004014 ORTHO05D005890 2.8e-11 72.0 47 70.2
Carub.0003s2128 Capsella rubella HOM05D004014 ORTHO05D018183 3.6e-11 71.6 67 56.7
CiPaw.01G227100 Carya illinoinensis HOM05D004014 ORTHO05D005890 3.6e-11 71.6 47 72.3
Haze_15924 Corylus avellana HOM05D004014 ORTHO05D005890 3.6e-11 71.6 47 72.3
Gohir.A09G080500 Gossypium hirsutum HOM05D004014 ORTHO05D005890 3.6e-11 71.6 47 70.2
Gorai.006G096100 Gossypium raimondii HOM05D004014 ORTHO05D005890 3.6e-11 71.6 47 70.2
Potri.001G197400 Populus trichocarpa HOM05D004014 ORTHO05D005890 3.6e-11 71.6 47 72.3
QL05p015866 Quercus lobata HOM05D004014 ORTHO05D005890 3.6e-11 71.6 47 72.3
Manes.11G028700 Manihot esculenta HOM05D004014 ORTHO05D005890 4.7e-11 71.2 47 70.2
Aqoxy7G01294 Aquilegia oxysepala HOM05D004014 ORTHO05D005890 6.1e-11 70.9 47 70.2
Duzib192G0196 Durio zibethinus HOM05D004014 ORTHO05D005890 6.1e-11 70.9 47 70.2
HanXRQChr05g0140121 Helianthus annuus HOM05D004014 ORTHO05D005890 6.1e-11 70.9 47 70.2
Nn8g38926 Nelumbo nucifera HOM05D004014 ORTHO05D005890 6.1e-11 70.9 47 72.3
Potri.003G033700 Populus trichocarpa HOM05D004014 ORTHO05D005890 6.1e-11 70.9 47 72.3
Thecc.06G108100 Theobroma cacao HOM05D004014 ORTHO05D005890 6.1e-11 70.9 47 70.2
Atru.chr1.3637 Acer truncatum HOM05D004014 ORTHO05D005890 8.0e-11 70.5 47 70.2
Atru.chr8.1187 Acer truncatum HOM05D004014 ORTHO05D005890 8.0e-11 70.5 47 70.2
DCAR_007611 Daucus carota HOM05D004014 ORTHO05D005890 8.0e-11 70.5 47 72.3
Manes.04G137700 Manihot esculenta HOM05D004014 ORTHO05D005890 8.0e-11 70.5 47 70.2
PGR102G0116 Punica granatum HOM05D004014 ORTHO05D005890 8.0e-11 70.5 47 70.2
unitig_37.g12991 Utricularia gibba HOM05D004014 ORTHO05D005890 8.0e-11 70.5 46 71.7
FvH4_6g32980 Fragaria vesca HOM05D004014 ORTHO05D005890 1.0e-10 70.1 47 68.1
FAN02G0480 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.0e-10 70.1 47 68.1
FAN05G5071 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.0e-10 70.1 47 68.1
FAN09G0688 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.0e-10 70.1 47 68.1
FAN14G2620 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.0e-10 70.1 47 68.1
Lsat_1_v5_gn_4_95921 Lactuca sativa HOM05D004014 ORTHO05D005890 1.0e-10 70.1 47 70.2
Lsat_1_v5_gn_5_53240 Lactuca sativa HOM05D004014 ORTHO05D018183 1.0e-10 70.1 47 70.2
AUR62037625 Chenopodium quinoa HOM05D004014 ORTHO05D005890 1.4e-10 69.7 55 60.0
AUR62041068 Chenopodium quinoa HOM05D004014 ORTHO05D005890 1.4e-10 69.7 55 60.0
Os01g0550100 Oryza sativa ssp. japonica HOM05D004014 ORTHO05D005890 1.4e-10 69.7 47 70.2
QL05p015273 Quercus lobata HOM05D004014 ORTHO05D005890 1.4e-10 69.7 36 86.1
Sc12g0009850 Simmondsia chinensis HOM05D004014 ORTHO05D005890 1.4e-10 69.7 47 70.2
Sabra03G0029500 Salix brachista HOM05D004014 ORTHO05D005890 1.8e-10 69.3 47 70.2
SGA_v2.0_scaffold71G23744 Striga asiatica HOM05D004014 ORTHO05D005890 1.8e-10 69.3 47 70.2
TAR626G0060 Trochodendron aralioides HOM05D004014 ORTHO05D005890 1.8e-10 69.3 47 68.1
Migut.I01003 Erythranthe guttata HOM05D004014 ORTHO05D005890 2.3e-10 68.9 47 68.1
MBI04_g06225_MAGBIO Magnolia biondii HOM05D004014 ORTHO05D005890 2.3e-10 68.9 47 70.2
Oeu039979.1 Olea europaea HOM05D004014 ORTHO05D005890 2.3e-10 68.9 47 68.1
Psat4g193640 Pisum sativum HOM05D004014 ORTHO05D005890 2.3e-10 68.9 53 60.4
SalBow6G0444 Salvia bowleyana HOM05D004014 ORTHO05D005890 2.3e-10 68.9 46 71.7
SGA_v2.0_scaffold45G16993 Striga asiatica HOM05D004014 ORTHO05D005890 2.3e-10 68.9 66 53.0
Gohir.D09G080501 Gossypium hirsutum HOM05D004014 ORTHO05D005890 3.0e-10 68.6 47 68.1
RcHm_v2.0_Chr2g0142531 Rosa chinensis HOM05D004014 ORTHO05D005890 3.0e-10 68.6 47 68.1
THA.LOC104817933 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 3.0e-10 68.6 46 67.4
arahy.Tifrunner.gnm1.ann1.ZVXK34 Arachis hypogaea HOM05D004014 ORTHO05D005890 4.0e-10 68.2 47 66.0
ClCG09G000550 Citrullus lanatus HOM05D004014 ORTHO05D005890 4.0e-10 68.2 47 70.2
Glyma.08G195900 Glycine max HOM05D004014 ORTHO05D005890 4.0e-10 68.2 47 66.0
Nitab4.5_0003218g0070 Nicotiana tabacum HOM05D004014 ORTHO05D005890 4.0e-10 68.2 52 61.5
VMungo0331G1129 Vigna mungo HOM05D004014 ORTHO05D005890 4.0e-10 68.2 47 66.0
ATR0789G134 Amborella trichopoda HOM05D004014 ORTHO05D005890 5.2e-10 67.8 47 70.2
Eucgr.F03104 Eucalyptus grandis HOM05D004014 ORTHO05D005890 5.2e-10 67.8 47 63.8
HanXRQChr09g0276341 Helianthus annuus HOM05D004014 ORTHO05D005890 5.2e-10 67.8 47 70.2
Medtr8g015660 Medicago truncatula HOM05D004014 ORTHO05D005890 5.2e-10 67.8 47 66.0
Peaxi162Scf00177g00215 Petunia axillaris HOM05D004014 ORTHO05D005890 5.2e-10 67.8 52 61.5
Solyc12g044740.2 Solanum lycopersicum HOM05D004014 ORTHO05D005890 5.2e-10 67.8 52 59.6
Sopen12g022890 Solanum pennellii HOM05D004014 ORTHO05D005890 5.2e-10 67.8 52 59.6
CsaV3_7G034900 Cucumis sativus L. HOM05D004014 ORTHO05D005890 6.8e-10 67.4 47 68.1
Glyma.07G012300 Glycine max HOM05D004014 ORTHO05D005890 6.8e-10 67.4 47 66.0
Sed0015232 Sechium edule HOM05D004014 ORTHO05D005890 6.8e-10 67.4 47 70.2
Ca_23300_v3 Cicer arietinum L. HOM05D004014 ORTHO05D005890 8.8e-10 67.0 47 66.0
Cc04_g02170 Coffea canephora HOM05D004014 ORTHO05D005890 8.8e-10 67.0 46 69.6
THA.LOC104805917 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 8.8e-10 67.0 47 66.0
Phvul.010G141700 Phaseolus vulgaris HOM05D004014 ORTHO05D005890 1.2e-09 66.6 46 65.2
TPR.G24219 Trifolium pratense HOM05D004014 ORTHO05D005890 1.2e-09 66.6 47 66.0
HPP92_005519 Vanilla planifolia HOM05D004014 ORTHO05D005890 1.2e-09 66.6 46 69.6
Zm00001eb162410 Zea mays HOM05D004014 ORTHO05D005890 1.2e-09 66.6 47 66.0
CAN.G12.3 Capsicum annuum HOM05D004014 ORTHO05D005890 1.5e-09 66.2 46 65.2
Nitab4.5_0006642g0010 Nicotiana tabacum HOM05D004014 ORTHO05D005890 1.5e-09 66.2 46 65.2
Lj3g0023335 Lotus japonicus HOM05D004014 ORTHO05D005890 2.0e-09 65.9 47 66.0
Zm00001eb356540 Zea mays HOM05D004014 ORTHO05D005890 2.0e-09 65.9 54 63.0
arahy.Tifrunner.gnm1.ann1.SBEJ10 Arachis hypogaea HOM05D004014 ORTHO05D005890 2.6e-09 65.5 46 65.2
MSTRG.22603 Avicennia marina HOM05D004014 ORTHO05D005890 2.6e-09 65.5 46 67.4
DCAR_007610 Daucus carota HOM05D004014 ORTHO05D005890 2.6e-09 65.5 47 70.2
MELO3C024402.2 Cucumis melo HOM05D004014 ORTHO05D005890 4.4e-09 64.7 47 66.0
Sed0015765 Sechium edule HOM05D004014 ORTHO05D005890 7.5e-09 63.9 47 68.1
Gohir.A10G062050 Gossypium hirsutum HOM05D004014 ORTHO05D005890 2.2e-08 62.4 36 75.0
Thhalv10011383m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 7.0e-07 57.4 76 48.7
Pp3c7_7460 Physcomitrium patens HOM05D004014 ORTHO05D005890 9.2e-07 57.0 44 56.8


User provided reference genes

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