Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035637 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 1.0e-55 219.9 117 100.0
CSS0016042 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 8.5e-55 216.9 117 98.3
CSS0039018 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 6.5e-47 190.7 116 92.2
CSS0024189 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 6.1e-45 184.1 114 89.5
CSS0049956 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 1.4e-33 146.4 115 75.7
Dinv18531 Davidia involucrata HOM05D001891 ORTHO05D004048 9.2e-33 143.7 114 71.9
Actinidia30510 Actinidia chinensis HOM05D001891 ORTHO05D004048 4.5e-32 141.4 124 71.0
Actinidia12501 Actinidia chinensis HOM05D001891 ORTHO05D004048 5.9e-32 141.0 114 71.9
Hma1.2p1_0613F.1_g189170 Hydrangea macrophylla HOM05D001891 ORTHO05D004048 2.3e-31 139.0 115 70.4
Actinidia32079 Actinidia chinensis HOM05D001891 ORTHO05D004048 1.1e-30 136.7 114 71.9
Prupe.3G220500 Prunus persica HOM05D001891 ORTHO05D004048 1.1e-30 136.7 114 69.3
QL08p033836 Quercus lobata HOM05D001891 ORTHO05D004048 1.1e-30 136.7 115 70.4
Solyc07g052600.3 Solanum lycopersicum HOM05D001891 ORTHO05D004048 1.5e-30 136.3 115 68.7
Peaxi162Scf00007g01230 Petunia axillaris HOM05D001891 ORTHO05D004048 1.9e-30 136.0 114 67.5
CANSAT64G0421 Cannabis sativa HOM05D001891 ORTHO05D004048 2.5e-30 135.6 114 65.8
CiPaw.03G163000 Carya illinoinensis HOM05D001891 ORTHO05D004048 2.5e-30 135.6 115 68.7
CiPaw.04G117900 Carya illinoinensis HOM05D001891 ORTHO05D004048 5.6e-30 134.4 115 67.0
DCAR_019211 Daucus carota HOM05D001891 ORTHO05D004048 5.6e-30 134.4 112 68.8
MD17G1092700 Malus domestica HOM05D001891 ORTHO05D004048 5.6e-30 134.4 114 67.5
Nitab4.5_0006207g0030 Nicotiana tabacum HOM05D001891 ORTHO05D004048 5.6e-30 134.4 117 65.8
Sopen07g026210 Solanum pennellii HOM05D001891 ORTHO05D004048 5.6e-30 134.4 115 67.8
arahy.Tifrunner.gnm1.ann1.6C63SS Arachis hypogaea HOM05D001891 ORTHO05D004048 7.3e-30 134.0 116 69.8
arahy.Tifrunner.gnm1.ann1.MDYX4P Arachis hypogaea HOM05D001891 ORTHO05D004048 7.3e-30 134.0 116 69.8
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 7.3e-30 134.0 115 69.6
Dinv39686 Davidia involucrata HOM05D001891 ORTHO05D004048 1.2e-29 133.3 115 68.7
GSVIVG01030625001 Vitis vinifera HOM05D001891 ORTHO05D004048 1.2e-29 133.3 115 68.7
MD09G1105000 Malus domestica HOM05D001891 ORTHO05D004048 1.6e-29 132.9 114 66.7
CAN.G921.6 Capsicum annuum HOM05D001891 ORTHO05D004048 2.8e-29 132.1 115 67.8
TAR627G0099 Trochodendron aralioides HOM05D001891 ORTHO05D004048 2.8e-29 132.1 114 66.7
Haze_12898 Corylus avellana HOM05D001891 ORTHO05D004048 6.1e-29 131.0 115 67.8
RcHm_v2.0_Chr2g0160081 Rosa chinensis HOM05D001891 ORTHO05D004048 8.0e-29 130.6 114 65.8
Lj3g0010899 Lotus japonicus HOM05D001891 ORTHO05D004048 1.8e-28 129.4 115 69.6
Nitab4.5_0005894g0030 Nicotiana tabacum HOM05D001891 ORTHO05D009433 1.8e-28 129.4 115 66.1
TAR629G3333 Trochodendron aralioides HOM05D001891 ORTHO05D004048 1.8e-28 129.4 114 64.9
Cc05_g05140 Coffea canephora HOM05D001891 ORTHO05D004048 2.3e-28 129.0 114 64.0
FvH4_6g43550 Fragaria vesca HOM05D001891 ORTHO05D004048 4.0e-28 128.3 114 64.0
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 4.0e-28 128.3 114 64.0
Lalb_Chr01g0005561 Lupinus albus HOM05D001891 ORTHO05D004048 4.0e-28 128.3 115 67.0
Nn1g06995 Nelumbo nucifera HOM05D001891 ORTHO05D004048 4.0e-28 128.3 112 67.0
Nitab4.5_0001176g0130 Nicotiana tabacum HOM05D001891 ORTHO05D009433 4.0e-28 128.3 115 66.1
Thecc.02G162400 Theobroma cacao HOM05D001891 ORTHO05D004048 5.2e-28 127.9 115 67.0
FAN09G3447 Fragaria x ananassa HOM05D001891 ORTHO05D004048 1.2e-27 126.7 114 63.2
Sabra17G0025800 Salix brachista HOM05D001891 ORTHO05D004048 1.2e-27 126.7 116 64.7
Manes.12G078400 Manihot esculenta HOM05D001891 ORTHO05D004048 1.5e-27 126.3 115 66.1
ClCG02G008440 Citrullus lanatus HOM05D001891 ORTHO05D004048 2.6e-27 125.6 116 62.9
Gorai.005G209300 Gossypium raimondii HOM05D001891 ORTHO05D004048 2.6e-27 125.6 116 65.5
Sed0013568 Sechium edule HOM05D001891 ORTHO05D004048 2.6e-27 125.6 117 62.4
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 3.4e-27 125.2 114 62.3
Nitab4.5_0000631g0040 Nicotiana tabacum HOM05D001891 ORTHO05D004048 3.4e-27 125.2 115 63.5
Potri.017G038800 Populus trichocarpa HOM05D001891 ORTHO05D004048 3.4e-27 125.2 116 65.5
vmacro09324 Vaccinium macrocarpon HOM05D001891 ORTHO05D004048 3.4e-27 125.2 115 64.3
Gohir.A03G163600 Gossypium hirsutum HOM05D001891 ORTHO05D004048 4.4e-27 124.8 115 65.2
arahy.Tifrunner.gnm1.ann1.NX9XDZ Arachis hypogaea HOM05D001891 ORTHO05D004048 5.8e-27 124.4 115 65.2
Cpa.g.sc8.236 Carica papaya HOM05D001891 ORTHO05D004048 5.8e-27 124.4 115 64.3
Glyma.12G195800 Glycine max HOM05D001891 ORTHO05D004048 5.8e-27 124.4 115 66.1
Ca_27743_v3 Cicer arietinum L. HOM05D001891 ORTHO05D004048 7.5e-27 124.0 115 64.3
Glyma.13G306700 Glycine max HOM05D001891 ORTHO05D004048 7.5e-27 124.0 116 64.7
Gohir.D02G187000 Gossypium hirsutum HOM05D001891 ORTHO05D004048 7.5e-27 124.0 115 65.2
VMungo1080G1612 Vigna mungo HOM05D001891 ORTHO05D004048 7.5e-27 124.0 115 65.2
Rhsim04G0056600 Rhododendron simsii HOM05D001891 ORTHO05D004048 9.8e-27 123.6 121 64.5
vmacro12228 Vaccinium macrocarpon HOM05D001891 ORTHO05D004048 9.8e-27 123.6 116 64.7
HanXRQChr17g0560941 Helianthus annuus HOM05D001891 ORTHO05D004048 1.3e-26 123.2 115 62.6
Ciclev10016204m.g Citrus clementina HOM05D001891 ORTHO05D004048 2.9e-26 122.1 114 63.2
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 2.9e-26 122.1 116 62.9
Duzib052G0734 Durio zibethinus HOM05D001891 ORTHO05D004048 3.7e-26 121.7 115 64.3
Psat5g265320 Pisum sativum HOM05D001891 ORTHO05D004048 4.9e-26 121.3 115 64.3
CAN.G80.19 Capsicum annuum HOM05D001891 ORTHO05D004048 6.4e-26 120.9 119 61.3
Oeu011080.1 Olea europaea HOM05D001891 ORTHO05D004048 6.4e-26 120.9 117 62.4
Atru.chr6.3149 Acer truncatum HOM05D001891 ORTHO05D004048 8.3e-26 120.6 115 63.5
Phvul.005G113600 Phaseolus vulgaris HOM05D001891 ORTHO05D004048 1.4e-25 119.8 115 62.6
DCAR_012959 Daucus carota HOM05D001891 ORTHO05D004048 2.4e-25 119.0 114 59.6
Lsat_1_v5_gn_8_129400 Lactuca sativa HOM05D001891 ORTHO05D004048 2.4e-25 119.0 123 59.3
Lj8A122T60 Lonicera japonica HOM05D001891 ORTHO05D004048 3.2e-25 118.6 116 62.9
THA.LOC104808497 Tarenaya hassleriana HOM05D001891 ORTHO05D004048 3.2e-25 118.6 104 62.5
Gorai.008G149900 Gossypium raimondii HOM05D001891 ORTHO05D004048 4.1e-25 118.2 116 62.1
Lj1A756G86 Lonicera japonica HOM05D001891 ORTHO05D004048 4.1e-25 118.2 114 62.3
Oeu041959.1 Olea europaea HOM05D001891 ORTHO05D004048 4.1e-25 118.2 116 60.3
TPR.G4167 Trifolium pratense HOM05D001891 ORTHO05D004048 7.0e-25 117.5 115 61.7
Duzib132G0769 Durio zibethinus HOM05D001891 ORTHO05D004048 9.2e-25 117.1 115 62.6
Sed0022558 Sechium edule HOM05D001891 ORTHO05D004048 9.2e-25 117.1 116 60.3
CsaV3_2G035190 Cucumis sativus L. HOM05D001891 ORTHO05D004048 1.2e-24 116.7 116 59.5
Eucgr.K00861 Eucalyptus grandis HOM05D001891 ORTHO05D004048 1.6e-24 116.3 114 57.0
Gohir.D12G138400 Gossypium hirsutum HOM05D001891 ORTHO05D004048 1.6e-24 116.3 115 61.7
Sopen12g001680 Solanum pennellii HOM05D001891 ORTHO05D004048 1.6e-24 116.3 119 57.1
Gohir.A12G134800 Gossypium hirsutum HOM05D001891 ORTHO05D004048 2.0e-24 115.9 115 61.7
TWI18G0897 Tripterygium wilfordii HOM05D001891 ORTHO05D004048 2.0e-24 115.9 114 58.8
MSTRG.12288 Avicennia marina HOM05D001891 ORTHO05D004048 3.5e-24 115.2 117 58.1
Sabra07G0098300 Salix brachista HOM05D001891 ORTHO05D004048 3.5e-24 115.2 119 62.2
Solyc12g005760.2 Solanum lycopersicum HOM05D001891 ORTHO05D004048 3.5e-24 115.2 121 57.0
Lj3g0025447 Lotus japonicus HOM05D001891 ORTHO05D004048 4.6e-24 114.8 116 61.2
MSTRG.14154 Avicennia marina HOM05D001891 ORTHO05D004048 6.0e-24 114.4 115 59.1
Potri.007G121600 Populus trichocarpa HOM05D001891 ORTHO05D004048 6.0e-24 114.4 119 59.7
PGR142G0845 Punica granatum HOM05D001891 ORTHO05D004048 7.8e-24 114.0 116 60.3
THA.LOC104802537 Tarenaya hassleriana HOM05D001891 ORTHO05D004048 1.3e-23 113.2 114 56.1
TWI75G1691 Tripterygium wilfordii HOM05D001891 ORTHO05D004048 1.3e-23 113.2 115 61.7
SGA_v2.0_scaffold70G23420 Striga asiatica HOM05D001891 ORTHO05D004048 2.3e-23 112.5 114 56.1
Aa31LG8G8420 Aethionema arabicum HOM05D001891 ORTHO05D004048 3.0e-23 112.1 116 58.6
PSO675G1171 Papaver somniferum HOM05D001891 ORTHO05D004048 3.0e-23 112.1 113 59.3
Duzib248G1135 Durio zibethinus HOM05D001891 ORTHO05D004048 6.6e-23 110.9 115 59.1
ECA233G3416 Erigeron canadensis HOM05D000014 ORTHO05D000093 6.6e-23 110.9 122 56.6
Hma1.2p1_0439F.1_g153260 Hydrangea macrophylla HOM05D001891 ORTHO05D004048 6.6e-23 110.9 114 58.8
CsaV3_7G003770 Cucumis sativus L. HOM05D001891 ORTHO05D004048 1.1e-22 110.2 105 59.0
AT3G21865 Arabidopsis thaliana HOM05D001891 ORTHO05D004048 1.5e-22 109.8 119 56.3
EL10Ac9g20654 Beta vulgaris HOM05D001891 ORTHO05D004048 1.5e-22 109.8 117 59.8
SGA_v2.0_scaffold49G18333 Striga asiatica HOM05D001891 ORTHO05D004048 1.9e-22 109.4 114 57.0
SalBow1G3276 Salvia bowleyana HOM05D001891 ORTHO05D004048 2.5e-22 109.0 115 58.3
Sc12g0002390 Simmondsia chinensis HOM05D001891 ORTHO05D004048 3.3e-22 108.6 115 59.1
MELO3C018802.2 Cucumis melo HOM05D001891 ORTHO05D004048 7.3e-22 107.5 105 57.1
Lalb_Chr03g0028901 Lupinus albus HOM05D001891 ORTHO05D004048 7.3e-22 107.5 115 59.1
CARHR097820 Cardamine hirsuta HOM05D001891 ORTHO05D004048 9.5e-22 107.1 116 55.2
Lsat_1_v5_gn_3_43721 Lactuca sativa HOM05D001891 ORTHO05D004048 9.5e-22 107.1 115 56.5
Medtr2g088850 Medicago truncatula HOM05D001891 ORTHO05D004048 9.5e-22 107.1 114 56.1
Sp3g19830 Schrenkiella parvula HOM05D001891 ORTHO05D004048 9.5e-22 107.1 114 52.6
A01p33120 Brassica napus HOM05D001891 ORTHO05D004048 1.6e-21 106.3 105 56.2
BraA01t03435Z Brassica rapa HOM05D001891 ORTHO05D004048 1.6e-21 106.3 105 56.2
BcaC05g28120 Brassica carinata HOM05D001891 ORTHO05D004048 2.1e-21 105.9 113 54.9
C05p41520 Brassica napus HOM05D001891 ORTHO05D004048 2.1e-21 105.9 113 54.9
BolC5t32890H Brassica oleracea HOM05D001891 ORTHO05D004048 2.1e-21 105.9 113 54.9
Migut.M00394 Erythranthe guttata HOM05D001891 ORTHO05D004048 2.1e-21 105.9 116 54.3
SalBow7G2009 Salvia bowleyana HOM05D001891 ORTHO05D004048 2.8e-21 105.5 115 55.7
Ah.01g014600 Amaranthus hybridus HOM05D001891 ORTHO05D004048 3.6e-21 105.1 115 60.0
HanXRQChr15g0479201 Helianthus annuus HOM05D001891 ORTHO05D004048 3.6e-21 105.1 110 53.6
BraA03t13403Z Brassica rapa HOM05D001891 ORTHO05D004048 4.7e-21 104.8 122 54.1
A05p26910 Brassica napus HOM05D001891 ORTHO05D004048 6.2e-21 104.4 114 54.4
BraA05t21571Z Brassica rapa HOM05D001891 ORTHO05D004048 6.2e-21 104.4 114 54.4
PSO541G4560 Papaver somniferum HOM05D001891 ORTHO05D004048 6.2e-21 104.4 113 56.6
A03p42500 Brassica napus HOM05D001891 ORTHO05D004048 8.0e-21 104.0 122 54.1
BolC3t17487H Brassica oleracea HOM05D001891 ORTHO05D004048 8.0e-21 104.0 120 53.3
BcaB06g26288 Brassica carinata HOM05D001891 ORTHO05D004048 1.1e-20 103.6 116 55.2
AUR62037141 Chenopodium quinoa HOM05D001891 ORTHO05D004048 1.4e-20 103.2 115 57.4
BcaC01g03476 Brassica carinata HOM05D001891 ORTHO05D004048 2.3e-20 102.4 119 52.9
C03p52060 Brassica napus HOM05D001891 ORTHO05D004048 2.3e-20 102.4 119 52.9
AL3G36020 Arabidopsis lyrata HOM05D001891 ORTHO05D004048 4.0e-20 101.7 118 53.4
Thhalv10021287m.g Eutrema salsugineum HOM05D001891 ORTHO05D004048 5.2e-20 101.3 116 51.7
AUR62025059 Chenopodium quinoa HOM05D001891 ORTHO05D004048 8.9e-20 100.5 115 55.7
Migut.H01220 Erythranthe guttata HOM05D001891 ORTHO05D004048 8.9e-20 100.5 111 52.3
BcaB04g20555 Brassica carinata HOM05D001891 ORTHO05D004048 1.5e-19 99.8 118 51.7
Oeu052537.1 Olea europaea HOM05D001891 ORTHO05D004048 7.5e-19 97.4 115 53.9
arahy.Tifrunner.gnm1.ann1.CI1LQF Arachis hypogaea HOM05D001891 ORTHO05D004048 9.8e-19 97.1 105 58.1
C01p42350 Brassica napus HOM05D001891 ORTHO05D004048 2.9e-18 95.5 114 50.9
unitig_21.g20003 Utricularia gibba HOM05D001891 ORTHO05D004048 2.9e-18 95.5 113 49.6
BcaC09g49122 Brassica carinata HOM05D001891 ORTHO05D004048 6.4e-18 94.4 115 49.6
BcaC09g49125 Brassica carinata HOM05D001891 ORTHO05D004048 6.4e-18 94.4 113 50.4
BolC1t04190H Brassica oleracea HOM05D001891 ORTHO05D004048 6.4e-18 94.4 115 49.6
BcaB04g19187 Brassica carinata HOM05D001891 ORTHO05D004048 1.9e-17 92.8 120 48.3
BcaC09g49127 Brassica carinata HOM05D001891 ORTHO05D004048 2.4e-17 92.4 107 50.5
Carub.0003s2193 Capsella rubella HOM05D001891 ORTHO05D004048 3.2e-17 92.0 117 49.6
ClCG02G001770 Citrullus lanatus HOM05D001891 ORTHO05D004048 3.2e-17 92.0 115 49.6
HanXRQChr10g0297471 Helianthus annuus HOM05D001891 ORTHO05D004048 5.4e-17 91.3 110 50.0
CDE04G1330 Ceratophyllum demersum HOM05D001891 ORTHO05D004048 7.0e-17 90.9 112 50.9
CDE07G1567 Ceratophyllum demersum HOM05D001891 ORTHO05D004048 4.6e-16 88.2 111 45.9
unitig_578.g16774 Utricularia gibba HOM05D001891 ORTHO05D004048 2.3e-15 85.9 115 47.0
Aa31LG9G2160 Aethionema arabicum HOM05D001891 ORTHO05D004048 3.9e-15 85.1 96 55.2
Zm00001eb431430 Zea mays HOM05D001891 ORTHO05D004048 2.5e-14 82.4 112 47.3
MBI06_g15670_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D004048 4.3e-14 81.6 110 49.1
Os04g0629000 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D004048 5.6e-14 81.3 114 47.4
Sed0020603 Sechium edule HOM05D001891 ORTHO05D004048 7.3e-14 80.9 113 46.0
HPP92_009055 Vanilla planifolia HOM05D001891 ORTHO05D004048 7.3e-14 80.9 113 45.1
Dinv02385 Davidia involucrata HOM05D001891 ORTHO05D004048 2.1e-13 79.3 110 44.5
HPP92_004139 Vanilla planifolia HOM05D001891 ORTHO05D004048 1.1e-12 77.0 113 48.7
Zm00001eb069570 Zea mays HOM05D001891 ORTHO05D004048 1.4e-12 76.6 112 44.6
Lj3A852T54 Lonicera japonica HOM05D001891 ORTHO05D004048 2.3e-12 75.9 109 45.0
AagrBONN_evm.TU.Sc2ySwM_362.2694 Anthoceros agrestis HOM05D001891 ORTHO05D004048 3.1e-12 75.5 117 43.6
Aqoxy4G02095 Aquilegia oxysepala HOM05D001891 ORTHO05D004048 6.8e-12 74.3 119 40.3
Actinidia00164 Actinidia chinensis HOM05D001891 ORTHO05D004048 1.2e-11 73.6 111 45.9
SMO356G0403 Selaginella moellendorffii HOM05D001891 ORTHO05D004048 1.2e-11 73.6 111 40.5
ATR0618G228 Amborella trichopoda HOM05D001891 ORTHO05D004048 1.5e-11 73.2 111 45.9
MBI03_g22259_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D004048 2.0e-11 72.8 105 45.7
TAR629G0018 Trochodendron aralioides HOM05D001891 ORTHO05D004048 2.0e-11 72.8 111 44.1
SEGI_12996 Sequoiadendron giganteum HOM05D001891 ORTHO05D004048 9.9e-11 70.5 113 43.4
MELO3C019235.2 Cucumis melo HOM05D001891 ORTHO05D004048 2.2e-10 69.3 75 60.0
Ah.01g003690 Amaranthus hybridus HOM05D001891 ORTHO05D004048 3.7e-10 68.6 104 45.2
BcaC09g49129 Brassica carinata HOM05D001891 ORTHO05D004048 3.7e-10 68.6 46 73.9
DCAR_002621 Daucus carota HOM05D001891 ORTHO05D004048 8.3e-10 67.4 101 39.6
Hund01141 Selenicereus undatus HOM05D001891 ORTHO05D004048 1.1e-09 67.0 70 61.4
QL03p043045 Quercus lobata HOM05D001891 ORTHO05D004048 1.9e-09 66.2 101 39.6
Aqoxy4G02099 Aquilegia oxysepala HOM05D001891 ORTHO05D004048 4.1e-09 65.1 55 61.8
Os04g0672800 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D004048 7.1e-09 64.3 103 40.8
Zm00001eb066610 Zea mays HOM05D001891 ORTHO05D004048 1.6e-08 63.2 101 43.6
Mapoly0037s0074 Marchantia polymorpha HOM05D001891 ORTHO05D004048 4.6e-08 61.6 116 36.2
Lsat_1_v5_gn_4_69321 Lactuca sativa HOM05D001891 ORTHO05D004048 6.0e-08 61.2 107 40.2
Pp3c3_16800 Physcomitrium patens HOM05D001891 ORTHO05D004048 1.0e-07 60.5 125 36.0
Pp3c3_16810 Physcomitrium patens HOM05D001891 ORTHO05D004048 1.0e-07 60.5 125 36.0


User provided reference genes

Program Settings