Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035615 Camellia sinensis var. sinensis HOM05D005621 ORTHO05D007248 1.1e-30 136.0 70 100.0
CSS0032010 Camellia sinensis var. sinensis HOM05D005621 ORTHO05D007248 6.1e-24 113.6 73 82.2
TPR.G16335 Trifolium pratense HOM05D005621 ORTHO05D007248 2.3e-23 111.7 73 79.5
Actinidia16560 Actinidia chinensis HOM05D005621 ORTHO05D007248 3.9e-23 110.9 73 79.5
Ca_18557_v3 Cicer arietinum L. HOM05D005621 ORTHO05D007248 6.7e-23 110.2 73 79.5
HanXRQChr09g0253381 Helianthus annuus HOM05D005621 ORTHO05D007248 6.7e-23 110.2 73 80.8
CANSAT35G1861 Cannabis sativa HOM05D005621 ORTHO05D007248 8.8e-23 109.8 72 79.2
Cc02_g13570 Coffea canephora HOM05D005621 ORTHO05D007248 8.8e-23 109.8 73 79.5
CAN.G529.17 Capsicum annuum HOM05D005621 ORTHO05D007248 1.1e-22 109.4 73 79.5
Dinv17326 Davidia involucrata HOM05D005621 ORTHO05D007248 1.1e-22 109.4 73 78.1
Oeu029361.1 Olea europaea HOM05D005621 ORTHO05D007248 1.1e-22 109.4 73 79.5
SalBow7G0434 Salvia bowleyana HOM05D005621 ORTHO05D007248 1.1e-22 109.4 73 79.5
SalBow7G3926 Salvia bowleyana HOM05D005621 ORTHO05D007248 1.1e-22 109.4 73 79.5
DCAR_004062 Daucus carota HOM05D005621 ORTHO05D007248 1.5e-22 109.0 73 79.5
ECA236G3692 Erigeron canadensis HOM05D005621 ORTHO05D007248 1.5e-22 109.0 73 79.5
Hma1.2p1_0208F.1_g088250 Hydrangea macrophylla HOM05D005621 ORTHO05D007248 1.5e-22 109.0 73 79.5
Lj4g0015429 Lotus japonicus HOM05D005621 ORTHO05D007248 1.5e-22 109.0 73 79.5
Lalb_Chr16g0383871 Lupinus albus HOM05D005621 ORTHO05D007248 1.5e-22 109.0 73 79.5
Cfa000492 Carpinus fangiana HOM05D005621 ORTHO05D007248 2.0e-22 108.6 73 79.5
Haze_06422 Corylus avellana HOM05D005621 ORTHO05D007248 2.0e-22 108.6 73 79.5
MBI18_g13183_MAGBIO Magnolia biondii HOM05D005621 ORTHO05D007248 2.0e-22 108.6 73 79.5
PGR004G2009 Punica granatum HOM05D005621 ORTHO05D007248 2.0e-22 108.6 73 79.5
SGA_v2.0_scaffold109G31092 Striga asiatica HOM05D005621 ORTHO05D007248 2.6e-22 108.2 73 79.5
MSTRG.14706 Avicennia marina HOM05D005621 ORTHO05D007248 3.3e-22 107.8 73 78.1
Medtr4g088615 Medicago truncatula HOM05D005621 ORTHO05D007248 3.3e-22 107.8 73 78.1
Nitab4.5_0005745g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 3.3e-22 107.8 73 78.1
Nitab4.5_0013984g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 3.3e-22 107.8 73 78.1
Solyc02g077990.3 Solanum lycopersicum HOM05D005621 ORTHO05D007248 3.3e-22 107.8 73 78.1
Sopen02g022830 Solanum pennellii HOM05D005621 ORTHO05D007248 3.3e-22 107.8 73 78.1
PGSC0003DMG400029704 Solanum tuberosum HOM05D005621 ORTHO05D007248 3.3e-22 107.8 73 78.1
CiPaw.09G061400 Carya illinoinensis HOM05D005621 ORTHO05D007248 4.4e-22 107.5 73 78.1
ClCG01G023060 Citrullus lanatus HOM05D005621 ORTHO05D007248 4.4e-22 107.5 73 78.1
Dinv40577 Davidia involucrata HOM05D005621 ORTHO05D007248 4.4e-22 107.5 73 76.7
Lalb_Chr09g0327691 Lupinus albus HOM05D005621 ORTHO05D007248 4.4e-22 107.5 73 78.1
Sed0019345 Sechium edule HOM05D005621 ORTHO05D007248 4.4e-22 107.5 73 76.7
unitig_0.g964 Utricularia gibba HOM05D005621 ORTHO05D007248 4.4e-22 107.5 73 76.7
VMungo0251G0522 Vigna mungo HOM05D005621 ORTHO05D007248 4.4e-22 107.5 73 76.7
Nitab4.5_0012909g0010 Nicotiana tabacum HOM05D005621 ORTHO05D007248 5.7e-22 107.1 73 76.7
Peaxi162Scf02261g00011 Petunia axillaris HOM05D005621 ORTHO05D007248 5.7e-22 107.1 73 75.3
Phvul.002G229700 Phaseolus vulgaris HOM05D005621 ORTHO05D007248 5.7e-22 107.1 73 76.7
THA.LOC104814219 Tarenaya hassleriana HOM05D005621 ORTHO05D007248 5.7e-22 107.1 73 78.1
Thecc.06G184600 Theobroma cacao HOM05D005621 ORTHO05D007248 5.7e-22 107.1 73 78.1
MELO3C007277.2 Cucumis melo HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 76.7
CsaV3_6G050190 Cucumis sativus L. HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 76.7
Migut.H01481 Erythranthe guttata HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 76.7
FvH4_3g08970 Fragaria vesca HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 78.1
FAN11G2270 Fragaria x ananassa HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 78.1
FAN16G3294 Fragaria x ananassa HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 78.1
Glyma.07G198500 Glycine max HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 76.7
Nn1g06478 Nelumbo nucifera HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 78.1
Potri.004G045700 Populus trichocarpa HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 79.5
RcHm_v2.0_Chr5g0008741 Rosa chinensis HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 78.1
Sabra04G0028500 Salix brachista HOM05D005621 ORTHO05D007248 7.4e-22 106.7 73 79.5
CDE02G0355 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 9.7e-22 106.3 73 76.7
CDE05G0202 Ceratophyllum demersum HOM05D005621 ORTHO05D007248 9.7e-22 106.3 73 76.7
Atru.chr10.1848 Acer truncatum HOM05D005621 ORTHO05D007248 1.3e-21 105.9 73 76.7
Gohir.A05G160800 Gossypium hirsutum HOM05D005621 ORTHO05D007248 1.3e-21 105.9 73 76.7
QL05p041319 Quercus lobata HOM05D005621 ORTHO05D007248 1.3e-21 105.9 72 76.4
Ciclev10016057m.g Citrus clementina HOM05D005621 ORTHO05D007248 1.7e-21 105.5 73 76.7
COL.COLO4_31445 Corchorus olitorius HOM05D005621 ORTHO05D007248 1.7e-21 105.5 73 76.7
Gohir.A06G211100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 1.7e-21 105.5 73 76.7
Gohir.D05G163500 Gossypium hirsutum HOM05D005621 ORTHO05D007248 1.7e-21 105.5 73 76.7
Gohir.D06G210100 Gossypium hirsutum HOM05D005621 ORTHO05D007248 1.7e-21 105.5 73 76.7
Gorai.010G256400 Gossypium raimondii HOM05D005621 ORTHO05D007248 1.7e-21 105.5 73 76.7
MD00G1115700 Malus domestica HOM05D005621 ORTHO05D007248 1.7e-21 105.5 73 76.7
MD10G1292500 Malus domestica HOM05D005621 ORTHO05D007248 1.7e-21 105.5 73 76.7
Prupe.4G049400 Prunus persica HOM05D005621 ORTHO05D007248 1.7e-21 105.5 73 75.3
Gorai.009G168600 Gossypium raimondii HOM05D005621 ORTHO05D007248 2.2e-21 105.1 73 76.7
PSO541G5241 Papaver somniferum HOM05D005621 ORTHO05D007248 2.2e-21 105.1 73 78.1
PSO675G9131 Papaver somniferum HOM05D005621 ORTHO05D007248 2.2e-21 105.1 73 78.1
Aqoxy1G02371 Aquilegia oxysepala HOM05D005621 ORTHO05D007248 2.8e-21 104.8 73 74.0
AL4G29560 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 75.3
AT2G33800 Arabidopsis thaliana HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 75.3
BcaC02g07768 Brassica carinata HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 75.3
A04p26030 Brassica napus HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 75.3
C04p63370 Brassica napus HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 75.3
BolC4t27812H Brassica oleracea HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 75.3
BraA04t18105Z Brassica rapa HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 75.3
Carub.0004s1547 Capsella rubella HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 75.3
CARHR127910 Cardamine hirsuta HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 75.3
AUR62014837 Chenopodium quinoa HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 76.7
AUR62017033 Chenopodium quinoa HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 76.7
Eucgr.D00609 Eucalyptus grandis HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 76.7
Sc05g0007560 Simmondsia chinensis HOM05D005621 ORTHO05D007248 3.7e-21 104.4 73 75.3
Aa31sc652G50 Aethionema arabicum HOM05D005621 ORTHO05D007248 4.8e-21 104.0 73 75.3
Aa31sc652G80 Aethionema arabicum HOM05D005621 ORTHO05D007248 4.8e-21 104.0 73 75.3
ATR0217G013 Amborella trichopoda HOM05D005621 ORTHO05D007248 4.8e-21 104.0 73 75.3
Glyma.13G177900 Glycine max HOM05D005621 ORTHO05D007248 4.8e-21 104.0 73 74.0
Sp4g16190 Schrenkiella parvula HOM05D005621 ORTHO05D007248 4.8e-21 104.0 73 75.3
Cpa.g.sc464.3 Carica papaya HOM05D005621 ORTHO05D007248 6.3e-21 103.6 73 76.7
Lj2A290T34 Lonicera japonica HOM05D005621 ORTHO05D007248 6.3e-21 103.6 73 74.0
Psat7g115360 Pisum sativum HOM05D005621 ORTHO05D007248 6.3e-21 103.6 73 74.0
TWI63G1165 Tripterygium wilfordii HOM05D005621 ORTHO05D007248 6.3e-21 103.6 73 74.0
Manes.16G029300 Manihot esculenta HOM05D005621 ORTHO05D007248 1.1e-20 102.8 73 75.3
Ah.09g237450 Amaranthus hybridus HOM05D005621 ORTHO05D007248 1.8e-20 102.1 73 74.0
Ah.14g089540 Amaranthus hybridus HOM05D005621 ORTHO05D007248 1.8e-20 102.1 73 74.0
Lsat_1_v5_gn_7_21701 Lactuca sativa HOM05D005621 ORTHO05D007248 1.8e-20 102.1 70 78.6
EL10Ac8g20402 Beta vulgaris HOM05D005621 ORTHO05D007248 4.1e-20 100.9 73 74.0
Duzib235G0013 Durio zibethinus HOM05D005621 ORTHO05D007248 6.9e-20 100.1 73 74.0
Rhsim02G0132300 Rhododendron simsii HOM05D005621 ORTHO05D007248 6.9e-20 100.1 73 72.6
Hund21218 Selenicereus undatus HOM05D005621 ORTHO05D007248 1.5e-19 99.0 73 71.2
vmacro15918 Vaccinium macrocarpon HOM05D005621 ORTHO05D007248 1.5e-19 99.0 73 69.9
Mapoly0008s0189 Marchantia polymorpha HOM05D005621 ORTHO05D007248 1.0e-18 96.3 73 68.5
Os03g0452300 Oryza sativa ssp. japonica HOM05D005621 ORTHO05D007248 2.5e-17 91.7 73 67.1
Pp3c11_10680 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.5e-17 91.7 73 65.8
Pp3c1_5050 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.5e-17 91.7 73 65.8
Pp3c7_18380 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.5e-17 91.7 73 65.8
HPP92_014186 Vanilla planifolia HOM05D005621 ORTHO05D007248 7.2e-17 90.1 73 68.5
AagrBONN_evm.TU.Sc2ySwM_344.1949 Anthoceros agrestis HOM05D005621 ORTHO05D007248 4.7e-16 87.4 73 63.0
AL4G11520 Arabidopsis lyrata HOM05D005621 ORTHO05D007248 1.0e-15 86.3 73 68.5
Potri.011G053900 Populus trichocarpa HOM05D005621 ORTHO05D007248 2.3e-15 85.1 73 68.5
SEGI_11788 Sequoiadendron giganteum HOM05D005621 ORTHO05D007248 3.9e-15 84.3 73 63.0
CBR_g50385 Chara braunii HOM05D005621 ORTHO05D007248 7.4e-14 80.1 74 55.4
Cc02_g13560 Coffea canephora HOM05D005621 ORTHO05D007248 1.4e-12 75.9 73 58.9
TAR626G1297 Trochodendron aralioides HOM05D005621 ORTHO05D007248 1.6e-11 72.4 73 57.5
SMO347G0200 Selaginella moellendorffii HOM05D005621 ORTHO05D007248 1.9e-09 65.5 51 64.7
MCO06G207 Micromonas commoda HOM05D005621 ORTHO05D007248 5.5e-09 63.9 58 53.4
Zm00001eb043240 Zea mays HOM05D005621 ORTHO05D007248 7.2e-09 63.5 63 58.7
Cre16.g659950 Chlamydomonas reinhardtii HOM05D005621 ORTHO05D007248 1.8e-07 58.9 66 43.9
BolC3t14587H Brassica oleracea HOM05D005621 ORTHO05D007248 4.4e-06 54.3 57 50.9
PRCOL_00000384 Prasinoderma coloniale HOM05D005621 ORTHO05D007248 5.7e-06 53.9 54 53.7


User provided reference genes

Program Settings