Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035556 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 7.0e-174 614.4 444 100.0
CSS0001074 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 3.6e-170 602.1 444 98.9
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 1.5e-104 384.0 444 75.7
Hma1.2p1_0315F.1_g122640 Hydrangea macrophylla HOM05D005999 ORTHO05D003360 1.5e-96 357.5 446 72.2
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 1.9e-91 340.5 436 66.5
Actinidia28736 Actinidia chinensis HOM05D005999 ORTHO05D003360 1.0e-87 328.2 442 67.6
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 2.1e-85 320.5 321 57.9
vmacro18444 Vaccinium macrocarpon HOM05D005999 ORTHO05D003360 6.0e-85 318.9 452 65.7
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 4.8e-82 309.3 451 61.0
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 1.1e-81 308.1 451 59.2
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 1.4e-81 307.8 447 64.2
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 2.4e-81 307.0 451 59.2
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 3.4e-80 303.1 448 61.8
Rhsim08G0029800 Rhododendron simsii HOM05D005999 ORTHO05D003360 1.0e-79 301.6 480 57.7
Prupe.7G175600 Prunus persica HOM05D005999 ORTHO05D003360 1.4e-78 297.7 441 62.8
Eucgr.I02298 Eucalyptus grandis HOM05D005999 ORTHO05D003360 1.9e-78 297.4 322 53.4
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 3.2e-78 296.6 447 59.5
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 5.5e-78 295.8 444 61.9
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 7.1e-78 295.4 331 51.7
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 2.7e-77 293.5 326 54.0
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 4.6e-77 292.7 456 57.5
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 7.9e-77 292.0 446 57.6
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 1.0e-76 291.6 436 60.1
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 3.9e-76 289.7 430 60.7
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 6.7e-76 288.9 373 62.5
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 1.1e-75 288.1 373 65.4
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 1.5e-75 287.7 446 58.7
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 1.6e-74 284.3 326 51.5
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 8.2e-74 282.0 277 53.4
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 1.1e-73 281.6 334 49.1
HanXRQChr09g0257041 Helianthus annuus HOM05D005999 ORTHO05D003360 1.4e-73 281.2 374 66.0
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 1.4e-73 281.2 273 54.2
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 6.9e-73 278.9 369 67.8
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 1.5e-72 277.7 381 62.7
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 4.5e-72 276.2 279 53.8
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 7.7e-72 275.4 273 53.5
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 7.7e-72 275.4 273 53.5
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 1.0e-71 275.0 387 64.1
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 1.0e-71 275.0 387 64.1
RcHm_v2.0_Chr2g0098251 Rosa chinensis HOM05D005999 ORTHO05D003360 1.0e-71 275.0 306 52.3
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 1.3e-71 274.6 381 62.5
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 1.7e-71 274.2 329 48.6
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 2.9e-71 273.5 341 50.7
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 1.4e-70 271.2 261 53.3
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 1.4e-70 271.2 433 60.3
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 3.2e-70 270.0 379 63.6
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 4.6e-69 266.2 381 63.3
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 5.1e-68 262.7 452 57.5
DCAR_011582 Daucus carota HOM05D005999 ORTHO05D003360 8.8e-68 261.9 388 63.1
SGA_v2.0_scaffold58G20568 Striga asiatica HOM05D005999 ORTHO05D003360 3.3e-67 260.0 338 47.9
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 7.4e-67 258.8 442 53.6
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 9.7e-67 258.5 329 46.8
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 1.7e-66 257.7 383 58.2
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 1.7e-66 257.7 266 53.4
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 2.2e-66 257.3 268 50.0
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 2.2e-66 257.3 319 47.0
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 2.8e-66 256.9 261 51.7
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 2.8e-66 256.9 268 51.1
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 3.7e-66 256.5 263 51.3
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 6.3e-66 255.8 264 49.2
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 1.4e-65 254.6 269 49.8
MD15G1236900 Malus domestica HOM05D005999 ORTHO05D003360 1.4e-65 254.6 300 52.0
EL10Ac6g13337 Beta vulgaris HOM05D005999 ORTHO05D003360 1.8e-65 254.2 376 58.0
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 1.8e-65 254.2 270 49.6
FAN19G2768 Fragaria x ananassa HOM05D005999 ORTHO05D003360 1.8e-65 254.2 299 49.5
Potri.007G060400 Populus trichocarpa HOM05D005999 ORTHO05D003360 1.8e-65 254.2 334 46.4
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 4.1e-65 253.1 268 49.6
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 4.1e-65 253.1 387 58.1
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 5.3e-65 252.7 268 49.6
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 5.3e-65 252.7 338 45.3
CDE05G3499 Ceratophyllum demersum HOM05D005999 ORTHO05D003360 2.0e-64 250.8 377 62.3
QL06p052235 Quercus lobata HOM05D005999 ORTHO05D003360 5.9e-64 249.2 250 54.0
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 7.7e-64 248.8 275 49.5
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 1.0e-63 248.4 327 47.4
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 3.8e-63 246.5 315 48.9
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 8.5e-63 245.4 271 49.8
Psat2g151600 Pisum sativum HOM05D005999 ORTHO05D003360 2.5e-62 243.8 262 51.9
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 3.2e-62 243.4 410 58.8
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 5.5e-62 242.7 310 45.2
CiPaw.08G125500 Carya illinoinensis HOM05D005999 ORTHO05D003360 5.5e-62 242.7 310 47.7
FvH4_1g10990 Fragaria vesca HOM05D005999 ORTHO05D003360 1.2e-61 241.5 295 50.2
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 1.2e-61 241.5 313 46.6
Cfa007034 Carpinus fangiana HOM05D005999 ORTHO05D003360 2.7e-61 240.4 314 47.5
Haze_03698 Corylus avellana HOM05D005999 ORTHO05D003360 3.6e-61 240.0 313 47.3
FAN23G1568 Fragaria x ananassa HOM05D005999 ORTHO05D003360 4.7e-61 239.6 291 54.3
Ca_24948_v3 Cicer arietinum L. HOM05D005999 ORTHO05D003360 7.9e-61 238.8 322 46.6
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 1.0e-60 238.4 495 53.1
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 3.0e-60 236.9 309 45.3
Sabra05G0086500 Salix brachista HOM05D005999 ORTHO05D003360 3.9e-60 236.5 321 45.5
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 3.9e-60 236.5 263 51.7
TPR.G25134 Trifolium pratense HOM05D005999 ORTHO05D003360 7.4e-59 232.3 268 48.5
Potri.005G105800 Populus trichocarpa HOM05D005999 ORTHO05D003360 1.3e-58 231.5 317 45.4
Hund16623 Selenicereus undatus HOM05D005999 ORTHO05D003360 2.4e-57 227.3 262 52.7
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 3.5e-56 223.4 268 47.4
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 7.4e-51 205.7 303 67.0
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 1.7e-50 204.5 473 42.5
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 2.6e-48 197.2 186 54.8
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 7.7e-48 195.7 259 44.0
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 3.8e-47 193.4 374 54.3
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 3.2e-46 190.3 264 43.9
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 1.1e-38 165.2 320 37.8
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 1.9e-38 164.5 276 38.4
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 5.5e-38 162.9 263 40.3
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 1.6e-37 161.4 230 80.9
PSO017G5004 Papaver somniferum HOM05D005999 ORTHO05D003360 3.6e-37 160.2 243 41.2
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 1.2e-32 145.2 113 63.7
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 5.9e-32 142.9 113 62.8
Peaxi162Scf00439g00012 Petunia axillaris HOM05D005999 ORTHO05D003360 1.1e-30 138.7 249 41.0
Cpa.g.sc6.318 Carica papaya HOM05D005999 ORTHO05D003360 1.4e-28 131.7 125 53.6
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 4.1e-25 120.2 80 68.8
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 7.0e-25 119.4 79 69.6
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 2.3e-23 114.4 80 66.2
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 1.4e-20 105.1 71 64.8
SalBow3G2044 Salvia bowleyana HOM05D005999 ORTHO05D003360 2.6e-19 100.9 114 45.6
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 4.4e-19 100.1 88 56.8
SalBow6G2335 Salvia bowleyana HOM05D002275 ORTHO05D003360 4.1e-17 93.6 117 42.7
SalBow6G0049 Salvia bowleyana HOM05D005999 ORTHO05D003360 5.4e-17 93.2 117 42.7
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.2e-16 92.0 117 42.7
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 3.5e-16 90.5 71 60.6
RcHm_v2.0_Chr1g0316981 Rosa chinensis HOM05D005999 ORTHO05D003360 4.3e-14 83.6 67 55.2
RcHm_v2.0_Chr1g0316921 Rosa chinensis HOM05D005999 ORTHO05D003360 3.1e-12 77.4 63 54.0
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 5.8e-11 73.2 72 45.8
Zm00001eb372000 Zea mays HOM05D005999 ORTHO05D003360 1.3e-10 72.0 86 46.5
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 2.2e-10 71.2 88 39.8
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 1.1e-09 68.9 88 39.8
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 1.9e-09 68.2 98 35.7
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 3.2e-09 67.4 68 45.6
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 4.1e-09 67.0 137 32.8
Glyma.01G161800 Glycine max HOM05D005999 ORTHO05D003360 7.1e-09 66.2 47 66.0
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 1.2e-08 65.5 102 36.3
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 1.6e-08 65.1 90 41.1
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 2.7e-08 64.3 136 29.4
Pp3c20_7810 Physcomitrium patens HOM05D005999 ORTHO05D003360 2.7e-08 64.3 71 46.5
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 4.6e-08 63.5 68 38.2
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 6.0e-08 63.2 86 37.2
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 6.0e-08 63.2 133 32.3
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 7.8e-08 62.8 73 41.1
Ah.10g030590 Amaranthus hybridus HOM05D007469 ORTHO05D003360 1.0e-07 62.4 68 41.2
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 1.0e-07 62.4 86 37.2
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 1.0e-07 62.4 68 44.1
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 1.0e-07 62.4 140 32.9
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 1.0e-07 62.4 147 32.0
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 1.3e-07 62.0 73 41.1
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 1.3e-07 62.0 86 36.0
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 1.7e-07 61.6 93 34.4
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 1.7e-07 61.6 143 29.4
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 2.3e-07 61.2 98 34.7
Medtr2g048680 Medicago truncatula HOM05D007469 ORTHO05D003360 2.3e-07 61.2 73 43.8
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 2.3e-07 61.2 98 32.7
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 3.0e-07 60.8 73 39.7
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 3.0e-07 60.8 85 38.8
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 3.0e-07 60.8 85 35.3
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 3.9e-07 60.5 165 25.5
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 3.9e-07 60.5 142 31.0
HPP92_010841 Vanilla planifolia HOM05D007469 ORTHO05D003360 3.9e-07 60.5 64 45.3
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 5.1e-07 60.1 76 36.8
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 5.1e-07 60.1 95 31.6
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 6.6e-07 59.7 68 42.6
Pp3c8_14440 Physcomitrium patens HOM05D005999 ORTHO05D003360 8.6e-07 59.3 67 43.3
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 1.1e-06 58.9 87 36.8
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 1.1e-06 58.9 73 39.7
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 1.1e-06 58.9 87 35.6
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 1.5e-06 58.5 100 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1399 Anthoceros agrestis HOM05D005999 ORTHO05D003360 1.5e-06 58.5 65 40.0
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.5e-06 58.5 68 41.2
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 1.5e-06 58.5 73 42.5
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 1.5e-06 58.5 71 36.6
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 1.5e-06 58.5 84 36.9
RcHm_v2.0_Chr7g0226491 Rosa chinensis HOM05D007469 ORTHO05D003360 1.5e-06 58.5 125 29.6
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 1.9e-06 58.2 67 40.3
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 1.9e-06 58.2 67 40.3
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 2.5e-06 57.8 73 39.7
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 2.5e-06 57.8 72 43.1
Zm00001eb442080 Zea mays HOM05D003450 ORTHO05D004150 2.5e-06 57.8 78 39.7
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 3.3e-06 57.4 86 34.9
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 3.3e-06 57.4 86 34.9
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 3.3e-06 57.4 135 30.4
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 3.3e-06 57.4 73 39.7
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 3.3e-06 57.4 73 39.7
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 3.3e-06 57.4 73 39.7
Zm00001eb208780 Zea mays HOM05D007469 ORTHO05D003360 3.3e-06 57.4 66 47.0
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 4.3e-06 57.0 135 31.1
Peaxi162Scf00290g00012 Petunia axillaris HOM05D007469 ORTHO05D003360 7.3e-06 56.2 88 35.2
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 7.3e-06 56.2 73 41.1
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 9.5e-06 55.8 86 34.9
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 9.5e-06 55.8 102 33.3
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 9.5e-06 55.8 124 30.6


User provided reference genes

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