Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1986.1 989 100.0
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1920.6 998 95.9
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1893.6 997 95.0
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1868.6 990 94.6
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1824.7 989 91.4
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1781.5 1029 86.9
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1761.1 985 88.8
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1759.2 989 87.5
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1758.0 989 87.5
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1749.9 989 87.4
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1749.9 989 88.1
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1737.2 989 86.1
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1735.3 986 87.0
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1734.2 989 86.7
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1733.4 990 86.2
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1733.4 989 85.7
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1732.6 987 86.3
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1723.4 989 86.1
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1723.4 989 85.7
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1719.9 989 85.3
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1719.9 989 85.6
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1719.1 989 84.8
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1717.6 989 86.0
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1712.2 989 85.2
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1710.7 990 85.2
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1706.8 990 84.8
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1705.3 1013 83.8
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1703.3 1013 83.7
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1702.6 989 84.5
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1702.6 989 84.8
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1697.9 990 84.0
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1694.5 995 84.6
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1693.3 990 84.1
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1693.3 989 84.2
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1688.7 994 84.1
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1687.5 991 84.6
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1686.8 1015 83.0
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1685.2 1013 82.8
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1684.5 987 84.1
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1684.5 989 83.6
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1682.9 989 83.7
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1681.4 991 84.2
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1680.2 989 83.8
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1676.0 992 83.4
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1674.8 989 83.3
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1672.1 989 83.0
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1671.8 1084 77.6
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1669.4 989 83.0
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1663.3 1005 81.9
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1657.9 986 82.8
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1656.3 989 82.8
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1656.0 986 82.2
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1652.1 990 81.7
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1651.7 1077 77.9
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1651.3 987 81.9
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1650.2 990 81.5
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1649.8 986 81.5
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1647.1 991 81.4
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1646.7 989 83.6
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 992 81.2
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1640.2 993 81.6
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1638.6 990 81.0
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1635.9 989 82.6
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1635.2 989 82.8
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1634.8 1002 80.0
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1633.2 992 80.8
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1632.8 986 81.5
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1630.9 991 80.3
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1628.2 990 80.3
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1628.2 990 81.9
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1626.3 990 80.5
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1622.8 995 80.2
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1619.8 1005 79.1
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1618.2 998 80.9
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1614.7 932 85.2
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1612.8 989 80.4
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1611.3 1005 79.0
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1607.8 989 80.6
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1602.4 1007 78.5
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1598.9 937 84.6
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1592.4 987 79.7
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1589.3 987 79.5
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1587.4 1025 78.4
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1567.7 1040 75.4
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1562.7 995 77.1
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1560.4 1017 77.3
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1552.0 989 79.5
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1536.2 928 83.3
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1523.5 989 77.1
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1505.0 995 80.0
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1494.9 896 81.9
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1462.2 993 73.4
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1459.9 845 84.6
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1458.0 790 91.5
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1456.4 817 89.0
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1436.0 995 72.8
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1411.0 762 92.4
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1378.6 785 86.4
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1350.9 856 79.2
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1343.6 772 86.0
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1339.7 794 84.8
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1329.3 952 71.0
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1311.2 792 81.8
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1286.6 763 83.7
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1211.4 782 78.5
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1201.8 762 80.3
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1200.3 982 60.9
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1198.0 1003 60.4
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 5.1e-302 1041.2 978 53.0
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 5.9e-298 1027.7 643 80.1
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.5e-296 1021.1 611 82.2
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 4.6e-295 1018.1 558 91.9
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 7.9e-295 1017.3 790 63.8
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 6.3e-292 1007.7 665 76.7
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.3e-257 893.6 574 77.4
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 1.1e-251 874.0 519 82.3
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 2.3e-249 866.3 517 84.3
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 1.1e-248 864.0 611 69.1
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.9e-204 716.5 417 81.5
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 3.5e-173 613.2 336 88.7
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.8e-159 567.0 337 83.7
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.3e-143 515.0 282 88.7
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 1.5e-128 464.9 1080 31.3
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 6.2e-122 443.0 249 87.6
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 3.2e-110 404.1 230 82.2
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 3.1e-105 387.5 1269 27.3
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.6e-104 384.4 268 75.0
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 4.4e-104 383.6 1036 27.9
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 5.8e-104 383.3 231 78.4
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 2.5e-99 367.9 204 86.3
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.5e-96 357.1 212 83.5
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 2.1e-93 348.2 207 79.2
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 2.1e-90 338.2 231 71.0
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 4.3e-83 313.9 178 82.6
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 4.8e-82 310.5 198 76.3
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.2e-77 295.8 304 53.9
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 4.6e-69 267.3 153 81.0
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 2.0e-67 261.9 441 38.1
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 6.1e-61 240.4 153 76.5
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 8.2e-58 229.9 127 81.9
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 2.0e-48 198.7 136 67.6
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.2e-46 191.4 174 66.7
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 1.3e-42 179.5 121 69.4
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 1.1e-41 176.4 163 58.3
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.5e-39 167.2 111 75.7
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.5e-38 165.2 108 75.9
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.8e-36 157.1 94 79.8
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.0e-32 145.6 112 67.9
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 8.6e-31 140.2 88 76.1
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.2e-30 137.1 72 94.4
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.5e-27 129.4 142 56.3
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.6e-27 128.6 138 56.5
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 9.8e-27 126.7 75 81.3
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-26 126.3 75 81.3
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-25 122.9 81 70.4
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.6e-24 117.9 92 66.3
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.0e-23 116.7 91 67.0
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.9e-23 114.8 80 81.2
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 2.0e-19 102.4 87 58.6
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.9e-17 95.9 51 86.3
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.9e-17 95.9 54 83.3
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.0e-15 87.8 100 44.0
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 6.6e-15 87.4 99 50.5
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.5e-14 83.6 52 65.4
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 1.8e-12 79.3 160 34.4
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 2.3e-12 79.0 224 25.9
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 2.3e-07 62.4 45 66.7
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 3.3e-06 58.5 47 63.8


User provided reference genes

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