Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035378 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D000639 4.9e-78 294.3 138 100.0
Lj4A830T36 Lonicera japonica HOM05D000084 ORTHO05D000639 1.2e-18 97.1 119 47.9
Dinv08214 Davidia involucrata HOM05D000084 ORTHO05D000639 8.3e-17 90.9 93 55.9
Rhsim08G0001400 Rhododendron simsii HOM05D000084 ORTHO05D000639 1.1e-16 90.5 93 57.0
MELO3C009014.2 Cucumis melo HOM05D000084 ORTHO05D000639 2.4e-16 89.4 110 49.1
CsaV3_4G031270 Cucumis sativus L. HOM05D000084 ORTHO05D000639 2.4e-16 89.4 110 49.1
Sed0026349 Sechium edule HOM05D000084 ORTHO05D000639 4.1e-16 88.6 105 50.5
COL.COLO4_10747 Corchorus olitorius HOM05D000084 ORTHO05D000639 5.4e-16 88.2 109 49.5
Ciclev10019965m.g Citrus clementina HOM05D000084 ORTHO05D000639 7.0e-16 87.8 100 51.0
Dinv30328 Davidia involucrata HOM05D000084 ORTHO05D000639 7.0e-16 87.8 92 55.4
Manes.09G052700 Manihot esculenta HOM05D000084 ORTHO05D000639 7.0e-16 87.8 93 53.8
vmacro18678 Vaccinium macrocarpon HOM05D000084 ORTHO05D000639 7.0e-16 87.8 93 57.0
Actinidia16519 Actinidia chinensis HOM05D000084 ORTHO05D000639 9.2e-16 87.4 93 55.9
Atru.chr9.1943 Acer truncatum HOM05D000084 ORTHO05D000639 1.2e-15 87.0 96 53.1
FAN23G1911 Fragaria x ananassa HOM05D000084 ORTHO05D000639 1.2e-15 87.0 93 57.0
Sopen12g013310 Solanum pennellii HOM05D000084 ORTHO05D000639 1.2e-15 87.0 93 53.8
CANSAT01G0286 Cannabis sativa HOM05D000084 ORTHO05D000639 1.6e-15 86.7 93 58.1
ATR0665G647 Amborella trichopoda HOM05D000084 ORTHO05D000639 2.0e-15 86.3 93 52.7
Lj1g0010965 Lotus japonicus HOM05D000084 ORTHO05D000639 2.0e-15 86.3 93 52.7
Sabra17G0051300 Salix brachista HOM05D000084 ORTHO05D000639 2.0e-15 86.3 93 52.7
Thecc.03G302600 Theobroma cacao HOM05D000084 ORTHO05D000639 2.0e-15 86.3 110 47.3
Lsat_1_v5_gn_5_68981 Lactuca sativa HOM05D000084 ORTHO05D000639 2.7e-15 85.9 101 50.5
Potri.001G088000 Populus trichocarpa HOM05D000084 ORTHO05D000639 2.7e-15 85.9 93 51.6
Sabra01G0064400 Salix brachista HOM05D000084 ORTHO05D000639 2.7e-15 85.9 93 51.6
Nitab4.5_0003946g0010 Nicotiana tabacum HOM05D000084 ORTHO05D000639 3.5e-15 85.5 93 52.7
Sed0023536 Sechium edule HOM05D000084 ORTHO05D000639 3.5e-15 85.5 107 47.7
Potri.003G142900 Populus trichocarpa HOM05D000084 ORTHO05D000639 4.6e-15 85.1 93 51.6
TWI60G0915 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 4.6e-15 85.1 100 49.0
Psat5g058480 Pisum sativum HOM05D000084 ORTHO05D000639 6.0e-15 84.7 93 51.6
TPR.G7861 Trifolium pratense HOM05D000084 ORTHO05D000639 7.8e-15 84.3 93 50.5
arahy.Tifrunner.gnm1.ann1.2JWH31 Arachis hypogaea HOM05D000084 ORTHO05D000639 1.0e-14 84.0 95 50.5
arahy.Tifrunner.gnm1.ann1.LW25T7 Arachis hypogaea HOM05D000084 ORTHO05D000639 1.0e-14 84.0 95 50.5
ECA233G5645 Erigeron canadensis HOM05D000084 ORTHO05D000639 1.0e-14 84.0 102 48.0
Glyma.04G207900 Glycine max HOM05D000084 ORTHO05D000639 1.3e-14 83.6 93 50.5
GSVIVG01022366001 Vitis vinifera HOM05D000084 ORTHO05D000639 1.3e-14 83.6 94 54.3
Aqoxy6G00240 Aquilegia oxysepala HOM05D000084 ORTHO05D000639 1.7e-14 83.2 93 50.5
Cc07_g19430 Coffea canephora HOM05D000084 ORTHO05D000639 1.7e-14 83.2 93 52.7
Medtr3g096960 Medicago truncatula HOM05D000084 ORTHO05D000639 1.7e-14 83.2 93 49.5
TAR376G0720 Trochodendron aralioides HOM05D000084 ORTHO05D000639 1.7e-14 83.2 93 51.6
Gohir.A09G189200 Gossypium hirsutum HOM05D000084 ORTHO05D000639 2.3e-14 82.8 100 49.0
MD15G1137900 Malus domestica HOM05D000084 ORTHO05D000639 2.3e-14 82.8 93 53.8
Nn5g28342 Nelumbo nucifera HOM05D000084 ORTHO05D000639 2.3e-14 82.8 93 50.5
PSO528G0033 Papaver somniferum HOM05D000084 ORTHO05D000639 2.3e-14 82.8 104 48.1
Prupe.4G280700 Prunus persica HOM05D000084 ORTHO05D000639 2.3e-14 82.8 93 53.8
Gohir.A13G011200 Gossypium hirsutum HOM05D000084 ORTHO05D000639 3.0e-14 82.4 100 48.0
MD00G1110700 Malus domestica HOM05D000084 ORTHO05D000639 3.0e-14 82.4 93 53.8
FAN19G1604 Fragaria x ananassa HOM05D000084 ORTHO05D000639 3.9e-14 82.0 93 55.9
Gohir.D09G184000 Gossypium hirsutum HOM05D000084 ORTHO05D000639 3.9e-14 82.0 100 49.0
Gorai.006G206400 Gossypium raimondii HOM05D000084 ORTHO05D000639 3.9e-14 82.0 100 49.0
MSTRG.23481 Avicennia marina HOM05D000084 ORTHO05D000639 5.0e-14 81.6 93 50.5
Duzib084G0398 Durio zibethinus HOM05D000084 ORTHO05D000639 5.0e-14 81.6 110 45.5
HanXRQChr15g0468931 Helianthus annuus HOM05D000084 ORTHO05D000639 8.6e-14 80.9 96 49.0
Gohir.D13G011900 Gossypium hirsutum HOM05D000084 ORTHO05D000639 1.1e-13 80.5 100 47.0
Gorai.013G013100 Gossypium raimondii HOM05D000084 ORTHO05D000639 1.1e-13 80.5 100 47.0
Sabra03G0103500 Salix brachista HOM05D000084 ORTHO05D000639 1.1e-13 80.5 93 49.5
Lalb_Chr08g0238011 Lupinus albus HOM05D000084 ORTHO05D000639 1.5e-13 80.1 108 45.4
Ca_17000_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000639 1.9e-13 79.7 92 50.0
Ca_17027_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000639 1.9e-13 79.7 92 50.0
Migut.H00834 Erythranthe guttata HOM05D000084 ORTHO05D000639 1.9e-13 79.7 94 48.9
Lalb_Chr11g0068711 Lupinus albus HOM05D000084 ORTHO05D000639 1.9e-13 79.7 103 47.6
Os10g0580300 Oryza sativa ssp. japonica HOM05D000084 ORTHO05D000639 1.9e-13 79.7 96 49.0
TWI60G1144 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 1.9e-13 79.7 93 49.5
MBI06_g01069_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D000639 2.5e-13 79.3 96 47.9
PSO170G4148 Papaver somniferum HOM05D000084 ORTHO05D000639 3.3e-13 79.0 104 47.1
SGA_v2.0_scaffold211G42170 Striga asiatica HOM05D000084 ORTHO05D000639 3.3e-13 79.0 93 49.5
Haze_25348 Corylus avellana HOM05D000084 ORTHO05D000639 5.6e-13 78.2 94 53.2
DCAR_022245 Daucus carota HOM05D000084 ORTHO05D000639 5.6e-13 78.2 103 45.6
FAN26G0094 Fragaria x ananassa HOM05D000084 ORTHO05D000639 5.6e-13 78.2 94 53.2
Sabra18G0051100 Salix brachista HOM05D000084 ORTHO05D000639 5.6e-13 78.2 93 49.5
Sabra18G0051400 Salix brachista HOM05D000084 ORTHO05D000639 5.6e-13 78.2 93 49.5
Hund07215 Selenicereus undatus HOM05D000084 ORTHO05D000639 5.6e-13 78.2 100 45.0
CDE06G1260 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 1.2e-12 77.0 92 48.9
Glyma.05G195300 Glycine max HOM05D000084 ORTHO05D000639 1.6e-12 76.6 92 48.9
Glyma.08G002900 Glycine max HOM05D000084 ORTHO05D000639 1.6e-12 76.6 92 48.9
Sc16g0009660 Simmondsia chinensis HOM05D000084 ORTHO05D000639 1.6e-12 76.6 93 47.3
Duzib205G1637 Durio zibethinus HOM05D000084 ORTHO05D000639 2.1e-12 76.3 110 43.6
Eucgr.H05079 Eucalyptus grandis HOM05D000084 ORTHO05D000639 2.1e-12 76.3 92 51.1
FvH4_1g25340 Fragaria vesca HOM05D000084 ORTHO05D000639 2.1e-12 76.3 93 52.7
VMungo0251G1725 Vigna mungo HOM05D000084 ORTHO05D000639 2.1e-12 76.3 92 48.9
Phvul.002G275500 Phaseolus vulgaris HOM05D000084 ORTHO05D000639 3.6e-12 75.5 92 48.9
QL06p045312 Quercus lobata HOM05D000084 ORTHO05D000639 3.6e-12 75.5 93 51.6
HPP92_014416 Vanilla planifolia HOM05D000084 ORTHO05D000639 3.6e-12 75.5 107 43.0
HPP92_014422 Vanilla planifolia HOM05D000084 ORTHO05D000639 3.6e-12 75.5 107 43.0
FAN28G2683 Fragaria x ananassa HOM05D000084 ORTHO05D000639 4.7e-12 75.1 93 51.6
Oeu038346.1 Olea europaea HOM05D000084 ORTHO05D000639 4.7e-12 75.1 93 47.3
RcHm_v2.0_Chr2g0123381 Rosa chinensis HOM05D000084 ORTHO05D000639 4.7e-12 75.1 93 51.6
HPP92_021119 Vanilla planifolia HOM05D000084 ORTHO05D000639 8.1e-12 74.3 88 46.6
unitig_60.g25591 Utricularia gibba HOM05D000084 ORTHO05D000639 1.8e-11 73.2 105 47.6
Nitab4.5_0000420g0140 Nicotiana tabacum HOM05D000084 ORTHO05D000639 4.0e-11 72.0 37 89.2
CAN.G34.14 Capsicum annuum HOM05D000084 ORTHO05D024740 6.8e-11 71.2 40 82.5
AUR62006902 Chenopodium quinoa HOM05D000084 ORTHO05D000639 6.8e-11 71.2 120 36.7
Aa31LG1G18320 Aethionema arabicum HOM05D000084 ORTHO05D000639 1.2e-10 70.5 102 44.1
Ah.02g117600 Amaranthus hybridus HOM05D000084 ORTHO05D000639 1.2e-10 70.5 92 44.6
PGR102G2481 Punica granatum HOM05D000084 ORTHO05D000639 1.5e-10 70.1 96 47.9
THA.LOC104818409 Tarenaya hassleriana HOM05D000084 ORTHO05D000639 1.5e-10 70.1 92 45.7
SHI06952 Sapria himalayana HOM05D000084 ORTHO05D000639 2.0e-10 69.7 120 36.7
BcaC04g23342 Brassica carinata HOM05D000084 ORTHO05D000639 4.4e-10 68.6 100 44.0
A09p08370 Brassica napus HOM05D000084 ORTHO05D000639 4.4e-10 68.6 100 44.0
C09p09450 Brassica napus HOM05D000084 ORTHO05D000639 4.4e-10 68.6 100 44.0
BolC9t53857H Brassica oleracea HOM05D000084 ORTHO05D000639 4.4e-10 68.6 100 44.0
BraA09t36486Z Brassica rapa HOM05D000084 ORTHO05D000639 4.4e-10 68.6 100 44.0
AUR62000549 Chenopodium quinoa HOM05D000084 ORTHO05D000639 4.4e-10 68.6 107 40.2
AT5G63610 Arabidopsis thaliana HOM05D000084 ORTHO05D000639 5.8e-10 68.2 92 45.7
BcaB04g19936 Brassica carinata HOM05D000084 ORTHO05D000639 5.8e-10 68.2 92 45.7
EL10Ac4g09669 Beta vulgaris HOM05D000084 ORTHO05D000639 7.5e-10 67.8 94 41.5
Carub.0008s2437 Capsella rubella HOM05D000084 ORTHO05D000639 1.3e-09 67.0 92 44.6
CARHR277490 Cardamine hirsuta HOM05D000084 ORTHO05D000639 1.3e-09 67.0 92 44.6
CiPaw.04G077500 Carya illinoinensis HOM05D000084 ORTHO05D000639 2.2e-09 66.2 92 48.9
Thhalv10004142m.g Eutrema salsugineum HOM05D000084 ORTHO05D000639 2.2e-09 66.2 92 44.6
Sp2g26700 Schrenkiella parvula HOM05D000084 ORTHO05D000639 2.2e-09 66.2 92 44.6
AL8G40730 Arabidopsis lyrata HOM05D000084 ORTHO05D000639 6.4e-09 64.7 92 43.5
Mapoly0129s0030 Marchantia polymorpha HOM05D000084 ORTHO05D000639 1.4e-08 63.5 87 42.5
Lj1g0027012 Lotus japonicus HOM05D000084 ORTHO05D000639 2.4e-08 62.8 79 48.1
Hund21793 Selenicereus undatus HOM05D000084 ORTHO05D000639 2.7e-07 59.3 37 70.3
Glyma.06G157900 Glycine max HOM05D000084 ORTHO05D000639 1.3e-06 57.0 36 72.2
Aa31sc412G60 Aethionema arabicum HOM05D000084 ORTHO05D000639 3.0e-06 55.8 92 38.0
Pp3c19_12350 Physcomitrium patens HOM05D000084 ORTHO05D000639 5.1e-06 55.1 87 39.1
CDE08G0532 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 8.6e-06 54.3 36 69.4


User provided reference genes

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