Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.3e-41 172.6 81 100.0
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 7.0e-24 113.6 53 98.1
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 7.0e-24 113.6 53 98.1
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.2e-23 112.8 53 96.2
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 1.2e-23 112.8 53 96.2
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.6e-23 112.5 53 94.3
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.6e-23 112.5 53 96.2
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.6e-23 112.5 53 96.2
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 2.7e-23 111.7 53 96.2
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 5.9e-23 110.5 53 96.2
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 5.9e-23 110.5 53 96.2
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 5.9e-23 110.5 53 96.2
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 5.9e-23 110.5 53 96.2
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 5.9e-23 110.5 53 96.2
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 7.8e-23 110.2 53 94.3
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 7.8e-23 110.2 53 94.3
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 7.8e-23 110.2 53 94.3
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.8e-23 110.2 50 100.0
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 7.8e-23 110.2 53 94.3
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 1.0e-22 109.8 53 94.3
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 1.0e-22 109.8 53 94.3
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 1.7e-22 109.0 53 94.3
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.3e-22 108.6 53 92.5
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 3.0e-22 108.2 58 81.0
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 92.5
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 92.5
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 92.5
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 92.5
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 92.5
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 92.5
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 92.5
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 92.5
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 92.5
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 92.5
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 3.9e-22 107.8 50 98.0
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 3.9e-22 107.8 53 94.3
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.0e-22 107.5 53 94.3
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 6.6e-22 107.1 53 94.3
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 8.6e-22 106.7 53 92.5
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 1.1e-21 106.3 53 94.3
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 1.1e-21 106.3 53 94.3
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.5e-21 105.9 53 90.6
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 1.9e-21 105.5 53 92.5
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 2.5e-21 105.1 53 90.6
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 3.3e-21 104.8 53 92.5
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 4.3e-21 104.4 53 90.6
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.3e-21 104.4 48 97.9
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.3e-21 104.4 48 97.9
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.3e-21 104.4 48 97.9
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.6e-21 104.0 53 88.7
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 7.3e-21 103.6 52 90.4
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 7.3e-21 103.6 51 94.1
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.1e-20 102.1 53 90.6
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.1e-20 102.1 50 94.0
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 2.8e-20 101.7 53 90.6
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.6e-20 101.3 53 84.9
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 3.6e-20 101.3 50 94.0
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.0e-20 100.1 53 86.8
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.8e-19 99.0 53 86.8
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 1.8e-19 99.0 53 86.8
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 1.8e-19 99.0 53 86.8
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 1.8e-19 99.0 53 86.8
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 1.8e-19 99.0 53 86.8
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 1.8e-19 99.0 53 86.8
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.0e-19 97.8 54 87.0
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 5.2e-19 97.4 61 75.4
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 8.9e-19 96.7 53 83.0
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 8.9e-19 96.7 46 93.5
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 8.9e-19 96.7 53 88.7
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 3.4e-18 94.7 52 84.6
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.4e-18 94.7 51 86.3
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 2.9e-17 91.7 48 87.5
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 4.9e-17 90.9 53 77.4
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 1.1e-16 89.7 48 85.4
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 2.4e-16 88.6 53 81.1
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 4.1e-16 87.8 43 93.0
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.1e-16 87.8 53 79.2
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 2.0e-15 85.5 52 80.8
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.0e-15 85.5 37 100.0
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 6.0e-15 84.0 41 92.7
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 2.3e-14 82.0 46 84.8
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.3e-14 82.0 37 97.3
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.0e-14 80.9 43 83.7
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 6.6e-14 80.5 49 77.6
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 6.6e-14 80.5 53 75.5
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 5.6e-13 77.4 61 65.6
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 1.6e-12 75.9 35 97.1
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 1.6e-12 75.9 35 97.1
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 8.1e-12 73.6 46 78.3
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 8.1e-12 73.6 35 94.3
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 8.1e-12 73.6 35 94.3
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.3e-11 72.0 32 100.0
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 3.1e-11 71.6 36 91.7
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 6.4e-09 63.9 32 90.6
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 1.6e-07 59.3 28 92.9
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.1e-07 58.9 28 96.4
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 4.6e-07 57.8 54 59.3
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 1.3e-06 56.2 52 55.8
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 2.3e-06 55.5 31 80.6
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 6.6e-06 53.9 33 63.6


User provided reference genes

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