Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1953.3 972 100.0
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1899.0 998 95.8
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1865.1 990 94.6
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1864.4 998 94.6
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1776.1 990 89.7
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1729.9 1030 85.2
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1716.4 990 86.3
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1714.1 990 85.9
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1713.0 990 86.4
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1709.1 986 87.1
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1701.8 990 86.5
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1696.0 987 85.6
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1693.7 990 84.9
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1689.9 991 84.9
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1689.1 990 84.4
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1682.9 990 84.2
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1682.9 990 84.5
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1682.9 990 84.5
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1681.4 990 84.4
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1676.0 986 84.6
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1667.9 990 83.3
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1667.9 990 84.2
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1666.7 991 83.8
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1666.0 990 83.8
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1665.2 990 83.5
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1664.4 990 83.7
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1663.3 990 84.2
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1661.7 991 83.5
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1652.9 996 83.4
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1652.5 990 83.0
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1649.8 1014 82.1
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1649.8 991 82.6
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1647.1 1014 81.9
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1646.7 997 82.7
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1644.4 990 82.7
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1642.1 990 82.5
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1638.2 1085 76.6
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1638.2 991 82.4
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1637.5 1016 81.6
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1636.7 992 82.8
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1635.5 993 82.3
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1634.4 990 82.1
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1632.1 988 82.4
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1630.5 1014 81.1
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1630.2 990 81.6
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1629.8 990 81.9
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1628.6 990 83.1
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1625.5 972 83.8
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1624.4 1006 80.9
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1624.4 992 82.0
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1623.2 991 81.8
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1610.9 990 81.4
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1610.5 987 80.7
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1609.7 991 80.5
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1609.0 988 80.8
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1607.8 991 80.3
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1607.0 987 80.3
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1606.7 992 80.4
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1604.3 993 80.2
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1604.3 987 81.0
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1602.4 1078 76.6
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1597.4 991 80.0
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1594.7 987 80.5
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1594.3 1003 79.0
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1593.9 992 79.4
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1590.9 994 80.1
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1589.7 991 79.5
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1589.3 993 79.7
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1587.0 990 81.1
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1578.5 991 79.0
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1577.4 996 78.9
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1574.3 999 79.3
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1572.0 1006 77.7
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1569.3 991 80.1
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1567.7 1006 77.4
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1565.4 984 79.6
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1561.2 933 83.3
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1559.7 1008 77.1
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1555.8 938 83.2
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1555.4 990 78.7
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1550.8 988 78.6
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1547.7 1028 77.2
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1529.2 990 77.5
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1522.3 1041 74.2
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1521.9 978 82.2
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1517.7 1018 76.1
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1508.0 996 75.0
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1504.6 990 78.1
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1491.5 930 81.6
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1464.1 990 75.3
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1444.5 791 91.2
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1444.1 818 88.9
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1442.2 897 79.9
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1436.0 994 72.9
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1413.3 978 73.0
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1409.4 846 82.5
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1404.0 763 92.5
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1345.9 773 86.9
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1342.8 786 85.0
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1335.9 795 84.9
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1309.3 855 78.0
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1296.2 953 69.8
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1285.0 764 84.3
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1268.4 793 80.1
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1205.3 783 78.9
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1190.3 763 80.1
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1162.5 983 60.0
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1160.2 1000 59.8
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.1e-291 1006.9 978 52.2
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 2.3e-291 1005.7 666 77.3
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 5.2e-291 1004.6 559 91.6
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 6.6e-286 987.6 644 78.1
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.9e-285 986.1 612 80.4
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 4.7e-284 981.5 791 62.8
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.2e-247 860.5 518 84.4
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 4.6e-247 858.6 575 75.5
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 8.2e-244 847.8 519 80.5
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 1.1e-235 820.8 612 66.5
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 6.6e-193 678.7 417 77.9
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 7.8e-162 575.5 336 84.2
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.9e-157 558.5 335 83.9
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.1e-142 510.4 282 88.7
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 2.5e-123 447.6 1079 31.3
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 7.9e-122 442.6 249 88.0
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 1.5e-104 385.2 269 76.2
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.7e-101 374.4 1038 27.6
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 9.4e-99 365.9 1266 26.9
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 2.7e-98 364.4 230 75.2
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.7e-93 347.8 212 82.5
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 7.7e-93 346.3 231 71.9
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 4.4e-88 330.5 204 79.4
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 1.2e-80 305.8 207 71.0
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 5.7e-80 303.5 198 75.3
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 8.3e-79 299.7 231 64.1
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 1.2e-74 285.8 302 52.3
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 4.9e-71 273.9 178 73.6
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 6.0e-69 266.9 153 80.4
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 4.9e-63 247.3 441 37.6
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 6.6e-60 236.9 127 83.5
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 2.5e-59 235.0 124 88.7
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 5.8e-48 197.2 136 67.6
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.9e-47 194.1 174 67.8
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 1.5e-43 182.6 121 71.1
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 8.1e-42 176.8 164 59.1
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.4e-38 164.1 111 73.9
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.6e-37 162.5 129 65.1
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.8e-36 159.1 100 76.0
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 2.2e-31 142.1 88 77.3
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 7.1e-30 137.1 98 70.4
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.1e-30 137.1 72 94.4
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.9e-27 129.0 131 59.5
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 4.3e-27 127.9 127 59.8
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.6e-26 125.9 75 81.3
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 4.8e-26 124.4 76 82.9
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-25 122.9 81 70.4
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-23 116.3 112 58.0
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.2e-23 115.5 111 58.6
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.8e-23 114.8 80 81.2
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.6e-18 99.4 87 55.2
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.8e-17 95.9 51 86.3
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.8e-17 95.9 54 83.3
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-15 89.7 117 40.2
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.3e-14 83.6 52 65.4
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 6.1e-13 80.9 160 35.0
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 3.3e-11 75.1 233 24.0
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 8.5e-07 60.5 49 65.3
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 4.2e-06 58.2 31 80.6


User provided reference genes

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