Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034967 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 2.9e-151 538.5 269 100.0
CSS0026532 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 1.3e-130 469.9 252 94.8
CSS0027140 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 1.3e-130 469.9 252 94.8
vmacro02128 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 2.1e-120 436.0 253 87.7
Rhsim11G0174300 Rhododendron simsii HOM05D003089 ORTHO05D003544 3.5e-120 435.3 253 87.7
Actinidia00513 Actinidia chinensis HOM05D003089 ORTHO05D003544 4.0e-116 421.8 253 85.4
Dinv42085 Davidia involucrata HOM05D003089 ORTHO05D003544 5.4e-113 411.4 253 82.6
Haze_02363 Corylus avellana HOM05D003089 ORTHO05D003544 4.3e-110 401.7 252 79.8
TAR622G0009 Trochodendron aralioides HOM05D003089 ORTHO05D003544 9.6e-110 400.6 253 79.4
TAR369G0923 Trochodendron aralioides HOM05D003089 ORTHO05D003544 2.1e-109 399.4 253 79.1
QL11p043039 Quercus lobata HOM05D003089 ORTHO05D003544 8.1e-109 397.5 252 79.8
Prupe.8G100100 Prunus persica HOM05D003089 ORTHO05D003544 4.4e-107 391.7 253 77.9
Sp1g36200 Schrenkiella parvula HOM05D003089 ORTHO05D003544 1.3e-106 390.2 253 79.1
Nn1g03865 Nelumbo nucifera HOM05D003089 ORTHO05D003544 1.7e-106 389.8 254 78.0
AL1G56300 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 2.2e-106 389.4 253 78.7
Carub.0001s3852 Capsella rubella HOM05D003089 ORTHO05D003544 2.9e-106 389.0 253 78.7
AT1G49340 Arabidopsis thaliana HOM05D003089 ORTHO05D003544 4.9e-106 388.3 253 78.3
Cpa.g.sc62.125 Carica papaya HOM05D003089 ORTHO05D003544 6.4e-106 387.9 253 78.7
A05p20670 Brassica napus HOM05D003089 ORTHO05D003544 1.4e-105 386.7 253 78.3
BraA05t20975Z Brassica rapa HOM05D003089 ORTHO05D003544 1.4e-105 386.7 253 78.3
BcaB02g11071 Brassica carinata HOM05D003089 ORTHO05D003544 2.4e-105 386.0 252 77.8
Aa31LG10G4610 Aethionema arabicum HOM05D003089 ORTHO05D003544 3.2e-105 385.6 252 77.4
BcaC05g27516 Brassica carinata HOM05D003089 ORTHO05D003544 3.2e-105 385.6 253 77.9
C05p34900 Brassica napus HOM05D003089 ORTHO05D003544 3.2e-105 385.6 253 77.9
RcHm_v2.0_Chr6g0263811 Rosa chinensis HOM05D003089 ORTHO05D003544 3.2e-105 385.6 253 76.7
BolC5t32215H Brassica oleracea HOM05D003089 ORTHO05D003544 4.2e-105 385.2 253 77.9
Thhalv10011177m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 4.2e-105 385.2 253 77.5
BcaB07g33678 Brassica carinata HOM05D003089 ORTHO05D003544 7.1e-105 384.4 252 77.0
BcaC08g43133 Brassica carinata HOM05D003089 ORTHO05D003544 7.1e-105 384.4 252 77.0
A06p03880 Brassica napus HOM05D003089 ORTHO05D003544 7.1e-105 384.4 252 77.0
C06p04080 Brassica napus HOM05D003089 ORTHO05D003544 7.1e-105 384.4 252 77.0
BolC6t35540H Brassica oleracea HOM05D003089 ORTHO05D003544 7.1e-105 384.4 252 77.0
BraA06t23597Z Brassica rapa HOM05D003089 ORTHO05D003544 7.1e-105 384.4 252 77.0
CANSAT25G2870 Cannabis sativa HOM05D003089 ORTHO05D003544 7.1e-105 384.4 253 77.5
Duzib132G0336 Durio zibethinus HOM05D003089 ORTHO05D003544 9.3e-105 384.0 253 77.9
Nn3g17070 Nelumbo nucifera HOM05D003089 ORTHO05D003544 1.2e-104 383.6 253 77.9
Ciclev10027664m.g Citrus clementina HOM05D003089 ORTHO05D003544 2.1e-104 382.9 253 77.5
MD05G1068200 Malus domestica HOM05D003089 ORTHO05D003544 2.1e-104 382.9 253 77.1
GSVIVG01031931001 Vitis vinifera HOM05D003089 ORTHO05D003544 2.1e-104 382.9 253 78.3
CARHR039330 Cardamine hirsuta HOM05D003089 ORTHO05D003544 2.7e-104 382.5 253 77.9
FvH4_2g08470 Fragaria vesca HOM05D003089 ORTHO05D003544 2.7e-104 382.5 253 75.9
FAN24G1972 Fragaria x ananassa HOM05D003089 ORTHO05D003544 2.7e-104 382.5 253 75.9
FAN24G2674 Fragaria x ananassa HOM05D003089 ORTHO05D003544 2.7e-104 382.5 253 75.9
FAN27G3350 Fragaria x ananassa HOM05D003089 ORTHO05D003544 3.5e-104 382.1 253 75.9
Manes.15G165000 Manihot esculenta HOM05D003089 ORTHO05D003544 3.5e-104 382.1 255 77.6
FAN15G0570 Fragaria x ananassa HOM05D003089 ORTHO05D003544 6.0e-104 381.3 253 75.9
Eucgr.G00451 Eucalyptus grandis HOM05D003089 ORTHO05D003544 1.0e-103 380.6 253 73.9
Potri.004G152400 Populus trichocarpa HOM05D003089 ORTHO05D003544 1.0e-103 380.6 253 76.3
Duzib052G1069 Durio zibethinus HOM05D003089 ORTHO05D003544 2.3e-103 379.4 262 74.8
Gohir.A04G117000 Gossypium hirsutum HOM05D003089 ORTHO05D003544 3.0e-103 379.0 252 75.8
Migut.B00253 Erythranthe guttata HOM05D003089 ORTHO05D003544 5.1e-103 378.3 252 76.2
Cc02_g17780 Coffea canephora HOM05D003089 ORTHO05D003544 6.6e-103 377.9 252 75.4
Oeu020770.2 Olea europaea HOM05D003089 ORTHO05D003544 6.6e-103 377.9 252 75.4
Lj1g0018032 Lotus japonicus HOM05D003089 ORTHO05D003544 1.1e-102 377.1 255 75.3
Gorai.012G146100 Gossypium raimondii HOM05D003089 ORTHO05D003544 1.5e-102 376.7 252 75.8
Potri.009G113700 Populus trichocarpa HOM05D003089 ORTHO05D003544 1.5e-102 376.7 253 75.9
THA.LOC104804915 Tarenaya hassleriana HOM05D003089 ORTHO05D003544 1.5e-102 376.7 252 75.8
MD10G1078200 Malus domestica HOM05D003089 ORTHO05D003544 2.5e-102 375.9 253 75.1
DCAR_003639 Daucus carota HOM05D003089 ORTHO05D003544 7.3e-102 374.4 255 74.1
Gohir.D04G158700 Gossypium hirsutum HOM05D003089 ORTHO05D003544 1.3e-101 373.6 252 75.4
Lalb_Chr23g0265471 Lupinus albus HOM05D003089 ORTHO05D003544 1.6e-101 373.2 254 74.0
Glyma.04G013900 Glycine max HOM05D003089 ORTHO05D003544 3.6e-101 372.1 254 74.0
Lalb_Chr00c44g0412571 Lupinus albus HOM05D003089 ORTHO05D003544 3.6e-101 372.1 254 74.4
Lalb_Chr08g0246561 Lupinus albus HOM05D003089 ORTHO05D003544 3.6e-101 372.1 254 74.4
Sabra04G0101100 Salix brachista HOM05D003089 ORTHO05D003544 4.8e-101 371.7 253 74.7
Thecc.02G123600 Theobroma cacao HOM05D003089 ORTHO05D003544 6.2e-101 371.3 252 74.6
Glyma.06G013800 Glycine max HOM05D003089 ORTHO05D003544 8.1e-101 370.9 255 73.7
TPR.G38232 Trifolium pratense HOM05D003089 ORTHO05D003544 1.1e-100 370.5 256 74.2
Ca_15379_v3 Cicer arietinum L. HOM05D003089 ORTHO05D003544 1.8e-100 369.8 255 74.1
Sabra09G0087300 Salix brachista HOM05D003089 ORTHO05D003544 1.8e-100 369.8 253 75.1
Hund06224 Selenicereus undatus HOM05D003089 ORTHO05D003544 1.8e-100 369.8 252 73.4
Phvul.009G009000 Phaseolus vulgaris HOM05D003089 ORTHO05D003544 5.3e-100 368.2 256 72.7
unitig_61.g25998 Utricularia gibba HOM05D003089 ORTHO05D003544 6.9e-100 367.9 252 74.6
Lj9C368G4 Lonicera japonica HOM05D003089 ORTHO05D003544 9.0e-100 367.5 254 74.8
Psat5g008280 Pisum sativum HOM05D003089 ORTHO05D003544 9.0e-100 367.5 255 73.7
CsaV3_7G023410 Cucumis sativus L. HOM05D003089 ORTHO05D003544 1.5e-99 366.7 252 73.0
Sc18g0004600 Simmondsia chinensis HOM05D003089 ORTHO05D003544 1.5e-99 366.7 252 74.2
MELO3C012545.2 Cucumis melo HOM05D003089 ORTHO05D003544 2.0e-99 366.3 254 72.4
Medtr3g116250 Medicago truncatula HOM05D003089 ORTHO05D003544 3.4e-99 365.5 256 73.0
Sed0019364 Sechium edule HOM05D003089 ORTHO05D003544 5.8e-99 364.8 256 72.7
ClCG02G005170 Citrullus lanatus HOM05D003089 ORTHO05D003544 7.6e-99 364.4 254 72.8
SGA_v2.0_scaffold32G13157 Striga asiatica HOM05D003089 ORTHO05D003544 9.9e-99 364.0 260 72.3
PGR042G2422 Punica granatum HOM05D003089 ORTHO05D003544 2.2e-98 362.8 253 73.5
HanXRQChr08g0216591 Helianthus annuus HOM05D003089 ORTHO05D003544 2.9e-98 362.5 255 72.5
VMungo1309G0726 Vigna mungo HOM05D003089 ORTHO05D003544 2.9e-98 362.5 257 70.8
CiPaw.06G137000 Carya illinoinensis HOM05D003089 ORTHO05D003544 3.8e-98 362.1 252 73.4
SGA_v2.0_scaffold58G20555 Striga asiatica HOM05D003089 ORTHO05D003544 6.4e-98 361.3 252 73.8
arahy.Tifrunner.gnm1.ann1.U64SVT Arachis hypogaea HOM05D003089 ORTHO05D003544 1.4e-97 360.1 256 71.5
TWI75G1044 Tripterygium wilfordii HOM05D003089 ORTHO05D003544 1.9e-97 359.8 253 73.1
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 2.4e-97 359.4 256 72.7
Gorai.005G228400 Gossypium raimondii HOM05D003089 ORTHO05D003544 2.4e-97 359.4 253 73.1
MBI03_g27663_MAGBIO Magnolia biondii HOM05D003089 ORTHO05D003544 2.4e-97 359.4 253 72.7
SalBow6G2407 Salvia bowleyana HOM05D003089 ORTHO05D003544 2.4e-97 359.4 252 72.6
SalBow6G4859 Salvia bowleyana HOM05D003089 ORTHO05D003544 2.4e-97 359.4 252 72.6
CAN.G566.47 Capsicum annuum HOM05D003089 ORTHO05D003544 5.4e-97 358.2 252 73.8
AUR62016712 Chenopodium quinoa HOM05D003089 ORTHO05D003544 7.1e-97 357.8 251 72.1
Ah.01g019560 Amaranthus hybridus HOM05D003089 ORTHO05D003544 9.3e-97 357.5 252 71.8
PSO478G0141 Papaver somniferum HOM05D003089 ORTHO05D003544 9.3e-97 357.5 253 74.7
Gohir.A03G179500 Gossypium hirsutum HOM05D003089 ORTHO05D003544 1.2e-96 357.1 253 72.7
Gohir.D02G202895 Gossypium hirsutum HOM05D003089 ORTHO05D003544 1.6e-96 356.7 253 72.7
Peaxi162Scf00684g00421 Petunia axillaris HOM05D003089 ORTHO05D003544 2.1e-96 356.3 252 73.8
Aqoxy3G03189 Aquilegia oxysepala HOM05D003089 ORTHO05D003544 3.5e-96 355.5 252 71.8
Sopen11g019550 Solanum pennellii HOM05D003089 ORTHO05D003544 3.5e-96 355.5 252 73.0
arahy.Tifrunner.gnm1.ann1.AHB8GW Arachis hypogaea HOM05D003089 ORTHO05D003544 6.0e-96 354.8 256 71.1
ECA234G4407 Erigeron canadensis HOM05D003089 ORTHO05D003544 6.0e-96 354.8 253 71.5
PSO161G0089 Papaver somniferum HOM05D003089 ORTHO05D003544 6.0e-96 354.8 253 74.3
Solyc11g043130.2 Solanum lycopersicum HOM05D003089 ORTHO05D003544 1.3e-95 353.6 252 72.2
HanXRQChr10g0307291 Helianthus annuus HOM05D003089 ORTHO05D003544 3.9e-95 352.1 261 69.7
Nitab4.5_0000336g0120 Nicotiana tabacum HOM05D003089 ORTHO05D003544 5.1e-95 351.7 252 73.0
MSTRG.20096 Avicennia marina HOM05D003089 ORTHO05D003544 1.9e-94 349.7 256 70.7
EL10Ac9g21746 Beta vulgaris HOM05D003089 ORTHO05D003544 1.9e-94 349.7 252 70.6
Lsat_1_v5_gn_5_118040 Lactuca sativa HOM05D003089 ORTHO05D003544 1.9e-94 349.7 255 71.4
ClCG11G004530 Citrullus lanatus HOM05D003089 ORTHO05D003544 4.3e-94 348.6 275 64.0
Nitab4.5_0000736g0060 Nicotiana tabacum HOM05D003089 ORTHO05D003544 4.3e-94 348.6 252 72.6
CsaV3_2G014550 Cucumis sativus L. HOM05D003089 ORTHO05D003544 1.6e-93 346.7 254 67.3
CDE04G2374 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 2.1e-93 346.3 253 70.4
Lsat_1_v5_gn_9_109381 Lactuca sativa HOM05D003089 ORTHO05D003544 3.6e-93 345.5 252 71.8
vmacro02129 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 1.2e-91 340.5 207 86.0
Sed0010503 Sechium edule HOM05D003089 ORTHO05D003544 9.9e-91 337.4 254 66.1
Hund00286 Selenicereus undatus HOM05D003089 ORTHO05D003544 3.8e-90 335.5 252 68.7
ATR0749G081 Amborella trichopoda HOM05D003089 ORTHO05D003544 8.4e-90 334.3 253 69.6
Peaxi162Scf00242g00019 Petunia axillaris HOM05D003089 ORTHO05D003544 1.9e-89 333.2 252 67.9
CAN.G638.23 Capsicum annuum HOM05D003089 ORTHO05D003544 9.3e-89 330.9 252 67.5
SHI05424 Sapria himalayana HOM05D003089 ORTHO05D003544 7.9e-88 327.8 252 67.1
HPP92_026531 Vanilla planifolia HOM05D003089 ORTHO05D003544 6.7e-87 324.7 250 67.6
Nitab4.5_0000982g0100 Nicotiana tabacum HOM05D003089 ORTHO05D003544 2.1e-85 319.7 252 68.3
COL.COLO4_32443 Corchorus olitorius HOM05D003089 ORTHO05D003544 9.0e-84 314.3 241 70.5
Nitab4.5_0002814g0110 Nicotiana tabacum HOM05D003089 ORTHO05D003544 1.5e-83 313.5 252 66.7
HPP92_026558 Vanilla planifolia HOM05D003089 ORTHO05D003544 1.5e-83 313.5 245 66.5
Carub.0001s3993 Capsella rubella HOM05D003089 ORTHO05D003544 3.8e-82 308.9 253 64.8
AUR62011350 Chenopodium quinoa HOM05D003089 ORTHO05D003544 3.2e-81 305.8 244 66.0
Aa31LG10G3360 Aethionema arabicum HOM05D003089 ORTHO05D003544 2.7e-80 302.8 253 63.6
Zm00001eb216400 Zea mays HOM05D003089 ORTHO05D003544 6.0e-80 301.6 252 65.5
Cc03_g13160 Coffea canephora HOM05D003089 ORTHO05D003544 3.9e-79 298.9 180 80.0
CANSAT21G0290 Cannabis sativa HOM05D003089 ORTHO05D003544 1.8e-76 290.0 256 63.3
AL4G25950 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 2.4e-76 289.7 253 59.7
Nitab4.5_0005596g0010 Nicotiana tabacum HOM05D003089 ORTHO05D003544 3.1e-76 289.3 226 66.4
Sp1g37760 Schrenkiella parvula HOM05D003089 ORTHO05D003544 2.0e-75 286.6 253 59.3
BcaB07g33546 Brassica carinata HOM05D003089 ORTHO05D003544 3.2e-73 279.3 253 58.5
A06p02740 Brassica napus HOM05D003089 ORTHO05D003544 4.2e-73 278.9 253 58.1
Lj5C199G5 Lonicera japonica HOM05D003089 ORTHO05D003544 1.2e-72 277.3 244 61.9
BraA06t23482Z Brassica rapa HOM05D003089 ORTHO05D003544 1.6e-72 276.9 253 58.1
BcaC08g43274 Brassica carinata HOM05D003089 ORTHO05D003544 8.7e-71 271.2 252 58.3
C06p06220 Brassica napus HOM05D003089 ORTHO05D003544 1.5e-70 270.4 253 58.1
BolC6t35733H Brassica oleracea HOM05D003089 ORTHO05D003544 1.5e-70 270.4 253 58.1
Mapoly0001s0228 Marchantia polymorpha HOM05D003089 ORTHO05D003544 2.4e-68 263.1 256 53.5
Mapoly0001s0451 Marchantia polymorpha HOM05D003089 ORTHO05D003544 1.1e-62 244.2 258 50.4
AagrBONN_evm.TU.Sc2ySwM_344.1888 Anthoceros agrestis HOM05D003089 ORTHO05D003544 1.3e-61 240.7 264 50.0
Thhalv10012090m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 4.5e-59 232.3 252 52.4
SMO116G0267 Selaginella moellendorffii HOM05D003089 ORTHO05D003544 1.0e-58 231.1 253 51.4
CSS0001432 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 2.5e-57 226.5 112 93.8
Pp3c5_19540 Physcomitrium patens HOM05D003089 ORTHO05D003544 1.3e-53 214.2 253 45.8
Pp3c22_1940 Physcomitrium patens HOM05D003089 ORTHO05D003544 6.5e-50 201.8 267 44.2
CBR_g31025 Chara braunii HOM05D003089 ORTHO05D003544 2.5e-49 199.9 227 45.4
Peaxi162Scf00242g00009 Petunia axillaris HOM05D003089 ORTHO05D003544 1.2e-43 181.0 243 46.5
Atru.chr5.2983 Acer truncatum HOM05D003089 ORTHO05D003544 3.2e-41 172.9 91 86.8
Atru.chr5.2984 Acer truncatum HOM05D003089 ORTHO05D003544 1.4e-39 167.5 131 68.7
MBI16_g11568_MAGBIO Magnolia biondii HOM05D003089 ORTHO05D003544 4.0e-39 166.0 110 70.0
Lsat_1_v5_gn_5_127261 Lactuca sativa HOM05D003089 ORTHO05D003544 2.8e-32 143.3 111 62.2
Lsat_1_v5_gn_8_45721 Lactuca sativa HOM05D003089 ORTHO05D003544 2.0e-27 127.1 81 72.8
Lsat_1_v5_gn_8_66001 Lactuca sativa HOM05D003089 ORTHO05D003544 1.6e-24 117.5 65 80.0
Lsat_1_v5_gn_5_122700 Lactuca sativa HOM05D003089 ORTHO05D003544 2.2e-21 107.1 64 76.6


User provided reference genes

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