Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034897 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D014145 2.2e-100 369.0 189 100.0
CSS0007838 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D014145 1.5e-37 160.2 193 54.9
CSS0024470 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D014145 2.6e-13 79.7 52 78.8
CSS0037546 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 1.0e-12 77.8 58 72.4
CSS0018520 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D014145 2.9e-12 76.3 63 68.3
CSS0018436 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 3.8e-12 75.9 91 51.6
CSS0000457 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D014145 6.5e-12 75.1 53 83.0
CSS0002516 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D014145 2.5e-11 73.2 93 51.6
CSS0024000 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 9.3e-11 71.2 130 40.8
CSS0037793 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 3.0e-09 66.2 54 74.1
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 6.7e-09 65.1 58 65.5
Migut.L00037 Erythranthe guttata HOM05D002906 ORTHO05D003211 9.7e-08 61.2 43 76.7
MD15G1249300 Malus domestica HOM05D002906 ORTHO05D003211 9.7e-08 61.2 43 76.7
Psat0s765g0200 Pisum sativum HOM05D002906 ORTHO05D003211 9.7e-08 61.2 43 76.7
Rhsim02G0110000 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.3e-07 60.8 58 56.9
TAR376G0542 Trochodendron aralioides HOM05D000561 ORTHO05D000514 1.3e-07 60.8 58 55.2
CSS0029324 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 1.6e-07 60.5 54 70.4
PGR102G3213 Punica granatum HOM05D002906 ORTHO05D003211 1.6e-07 60.5 43 76.7
Aa31LG8G15270 Aethionema arabicum HOM05D002906 ORTHO05D003211 2.2e-07 60.1 43 76.7
BcaC04g22930 Brassica carinata HOM05D002906 ORTHO05D003211 2.2e-07 60.1 43 76.7
BraA09t36816Z Brassica rapa HOM05D002906 ORTHO05D003211 2.2e-07 60.1 43 76.7
RcHm_v2.0_Chr2g0099941 Rosa chinensis HOM05D002906 ORTHO05D003211 2.2e-07 60.1 43 74.4
TWI38G1654 Tripterygium wilfordii HOM05D000561 ORTHO05D000514 2.2e-07 60.1 58 53.4
vmacro15814 Vaccinium macrocarpon HOM05D000561 ORTHO05D000514 2.2e-07 60.1 58 56.9
Potri.007G016100 Populus trichocarpa HOM05D002906 ORTHO05D003211 2.8e-07 59.7 43 74.4
AL3G51270 Arabidopsis lyrata HOM05D002906 ORTHO05D003211 3.7e-07 59.3 43 76.7
EL10Ac4g07825 Beta vulgaris HOM05D000561 ORTHO05D000514 3.7e-07 59.3 58 55.2
A09p11710 Brassica napus HOM05D002906 ORTHO05D003211 3.7e-07 59.3 82 48.8
CSS0012027 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D014145 3.7e-07 59.3 58 62.1
HanXRQChr01g0004251 Helianthus annuus HOM05D000561 ORTHO05D000514 3.7e-07 59.3 58 55.2
Hma1.2p1_1142F.1_g261000 Hydrangea macrophylla HOM05D000561 ORTHO05D000514 3.7e-07 59.3 58 56.9
Eucgr.J02394 Eucalyptus grandis HOM05D002906 ORTHO05D003211 4.8e-07 58.9 43 74.4
HanXRQChr14g0441611 Helianthus annuus HOM05D002906 ORTHO05D003211 4.8e-07 58.9 43 74.4
Manes.01G142700 Manihot esculenta HOM05D002906 ORTHO05D003211 4.8e-07 58.9 43 74.4
Manes.02G101100 Manihot esculenta HOM05D002906 ORTHO05D003211 4.8e-07 58.9 43 74.4
Oeu021940.2 Olea europaea HOM05D002906 ORTHO05D003211 4.8e-07 58.9 43 74.4
BcaB02g10717 Brassica carinata HOM05D002906 ORTHO05D003211 6.3e-07 58.5 43 74.4
BcaNung00749 Brassica carinata HOM05D002906 ORTHO05D003211 6.3e-07 58.5 43 74.4
Cfa000238 Carpinus fangiana HOM05D000561 ORTHO05D000514 6.3e-07 58.5 60 55.0
Haze_06784 Corylus avellana HOM05D000561 ORTHO05D000514 6.3e-07 58.5 60 55.0
Dinv13881 Davidia involucrata HOM05D000561 ORTHO05D000514 6.3e-07 58.5 58 55.2
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 6.3e-07 58.5 58 53.4
Sp3g31530 Schrenkiella parvula HOM05D002906 ORTHO05D003211 6.3e-07 58.5 43 74.4
AL7G14840 Arabidopsis lyrata HOM05D002906 ORTHO05D003211 8.2e-07 58.2 43 72.1
AT4G36210 Arabidopsis thaliana HOM05D002906 ORTHO05D003211 8.2e-07 58.2 43 72.1
Carub.0003s3223 Capsella rubella HOM05D002906 ORTHO05D003211 8.2e-07 58.2 43 74.4
ECA248G3614 Erigeron canadensis HOM05D000561 ORTHO05D000514 8.2e-07 58.2 58 51.7
TAR629G1691 Trochodendron aralioides HOM05D000561 ORTHO05D000514 8.2e-07 58.2 58 51.7
GSVIVG01018828001 Vitis vinifera HOM05D002906 ORTHO05D003211 8.2e-07 58.2 73 52.1
GSVIVG01037635001 Vitis vinifera HOM05D000561 ORTHO05D000514 8.2e-07 58.2 58 53.4
BolC9t54266H Brassica oleracea HOM05D002906 ORTHO05D003211 1.1e-06 57.8 43 74.4
CSS0032337 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D111661 1.1e-06 57.8 46 65.2
AUR62015756 Chenopodium quinoa HOM05D000561 ORTHO05D000514 1.1e-06 57.8 57 54.4
AUR62020459 Chenopodium quinoa HOM05D000561 ORTHO05D000514 1.1e-06 57.8 57 54.4
PGR119G1069 Punica granatum HOM05D000561 ORTHO05D000514 1.1e-06 57.8 60 56.7
TWI63G1003 Tripterygium wilfordii HOM05D000561 ORTHO05D000514 1.1e-06 57.8 58 51.7
CSS0015791 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 1.4e-06 57.4 58 53.4
CSS0025985 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 1.4e-06 57.4 58 53.4
CSS0036243 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D000514 1.4e-06 57.4 58 53.4
Ca_24895_v3 Cicer arietinum L. HOM05D002906 ORTHO05D003211 1.4e-06 57.4 43 74.4
ClCG07G008870 Citrullus lanatus HOM05D002906 ORTHO05D003211 1.4e-06 57.4 43 72.1
Ciclev10025097m.g Citrus clementina HOM05D002906 ORTHO05D003211 1.4e-06 57.4 43 72.1
COL.COLO4_21964 Corchorus olitorius HOM05D002906 ORTHO05D003211 1.4e-06 57.4 43 72.1
MELO3C017538.2 Cucumis melo HOM05D002906 ORTHO05D003211 1.4e-06 57.4 43 72.1
CsaV3_4G005320 Cucumis sativus L. HOM05D002906 ORTHO05D003211 1.4e-06 57.4 43 72.1
Dinv40056 Davidia involucrata HOM05D002906 ORTHO05D003211 1.4e-06 57.4 43 72.1
Oeu007584.1 Olea europaea HOM05D000561 ORTHO05D000514 1.4e-06 57.4 99 39.4
Sed0023539 Sechium edule HOM05D002906 ORTHO05D003211 1.4e-06 57.4 43 72.1
Solyc07g064510.3 Solanum lycopersicum HOM05D000561 ORTHO05D000514 1.4e-06 57.4 60 50.0
Sopen07g032710 Solanum pennellii HOM05D000561 ORTHO05D000514 1.4e-06 57.4 60 50.0
PGSC0003DMG400022220 Solanum tuberosum HOM05D000561 ORTHO05D000514 1.4e-06 57.4 60 50.0
CSS0004530 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D014145 1.8e-06 57.0 91 41.8
Glyma.11G074300 Glycine max HOM05D002906 ORTHO05D003211 1.8e-06 57.0 43 72.1
Manes.03G128501 Manihot esculenta HOM05D000561 ORTHO05D000514 1.8e-06 57.0 58 55.2
Manes.15G072700 Manihot esculenta HOM05D000561 ORTHO05D000514 1.8e-06 57.0 58 55.2
Nn1g03553 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.8e-06 57.0 58 51.7
Solyc02g084540.3 Solanum lycopersicum HOM05D002906 ORTHO05D003211 1.8e-06 57.0 85 47.1
HPP92_022296 Vanilla planifolia HOM05D002906 ORTHO05D003211 1.8e-06 57.0 43 74.4
Zm00001eb219820 Zea mays HOM05D000561 ORTHO05D000514 1.8e-06 57.0 58 50.0
Atru.chr2.3353 Acer truncatum HOM05D000561 ORTHO05D000514 2.4e-06 56.6 63 49.2
AT2G18100 Arabidopsis thaliana HOM05D002906 ORTHO05D003211 2.4e-06 56.6 43 74.4
CSS0010447 Camellia sinensis var. sinensis HOM05D000740 ORTHO05D014145 2.4e-06 56.6 45 75.6
CARHR108580 Cardamine hirsuta HOM05D002906 ORTHO05D003211 2.4e-06 56.6 43 74.4
Cc07_g10390 Coffea canephora HOM05D002906 ORTHO05D003211 2.4e-06 56.6 43 74.4
Duzib235G1019 Durio zibethinus HOM05D000561 ORTHO05D000514 2.4e-06 56.6 63 46.0
Lsat_1_v5_gn_7_17700 Lactuca sativa HOM05D000561 ORTHO05D000514 2.4e-06 56.6 58 51.7
QL08p010560 Quercus lobata HOM05D000561 ORTHO05D000514 2.4e-06 56.6 58 53.4
Thecc.06G218500 Theobroma cacao HOM05D000561 ORTHO05D000514 2.4e-06 56.6 63 47.6
Zm00001eb404060 Zea mays HOM05D002906 ORTHO05D003211 2.4e-06 56.6 43 72.1
BcaB07g31685 Brassica carinata HOM05D002906 ORTHO05D003211 3.1e-06 56.2 82 47.6
Medtr3g113090 Medicago truncatula HOM05D002906 ORTHO05D003211 3.1e-06 56.2 43 69.8
QL05p073542 Quercus lobata HOM05D000561 ORTHO05D000514 3.1e-06 56.2 60 51.7
QL05p073781 Quercus lobata HOM05D000561 ORTHO05D000514 3.1e-06 56.2 60 51.7
SGA_v2.0_scaffold51G18781 Striga asiatica HOM05D002906 ORTHO05D003211 3.1e-06 56.2 43 69.8
TPR.G31196 Trifolium pratense HOM05D002906 ORTHO05D003211 3.1e-06 56.2 43 69.8
TAR627G0058 Trochodendron aralioides HOM05D000561 ORTHO05D000514 3.1e-06 56.2 58 50.0
unitig_736.g22362 Utricularia gibba HOM05D002906 ORTHO05D003211 3.1e-06 56.2 43 72.1
Gohir.A10G013600 Gossypium hirsutum HOM05D000561 ORTHO05D000514 4.1e-06 55.8 58 50.0
Gohir.D10G013500 Gossypium hirsutum HOM05D000561 ORTHO05D000514 4.1e-06 55.8 58 50.0
Gorai.011G015300 Gossypium raimondii HOM05D000561 ORTHO05D000514 4.1e-06 55.8 58 50.0
Lj1A1228G74 Lonicera japonica HOM05D000561 ORTHO05D000514 4.1e-06 55.8 58 51.7
Os03g0569900 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D000514 4.1e-06 55.8 58 48.3
HPP92_005831 Vanilla planifolia HOM05D000561 ORTHO05D000514 4.1e-06 55.8 66 45.5
HPP92_005856 Vanilla planifolia HOM05D000561 ORTHO05D000514 4.1e-06 55.8 66 45.5
HPP92_005912 Vanilla planifolia HOM05D000561 ORTHO05D000514 4.1e-06 55.8 66 45.5
arahy.Tifrunner.gnm1.ann1.3CX1XJ Arachis hypogaea HOM05D000561 ORTHO05D000514 5.3e-06 55.5 65 49.2
arahy.Tifrunner.gnm1.ann1.A2FF76 Arachis hypogaea HOM05D002906 ORTHO05D003211 5.3e-06 55.5 43 67.4
arahy.Tifrunner.gnm1.ann1.K7AB56 Arachis hypogaea HOM05D002906 ORTHO05D003211 5.3e-06 55.5 43 67.4
Eucgr.F03462 Eucalyptus grandis HOM05D000561 ORTHO05D000514 5.3e-06 55.5 58 55.2
Nn6g32236 Nelumbo nucifera HOM05D002906 ORTHO05D003211 5.3e-06 55.5 43 72.1
Phvul.006G150400 Phaseolus vulgaris HOM05D000561 ORTHO05D000514 5.3e-06 55.5 59 50.8
SHI08582 Sapria himalayana HOM05D002906 ORTHO05D003211 5.3e-06 55.5 43 67.4
Ah.06g186280 Amaranthus hybridus HOM05D000561 ORTHO05D000514 6.9e-06 55.1 69 44.9
CSS0005865 Camellia sinensis var. sinensis HOM05D012088 ORTHO05D111724 6.9e-06 55.1 40 70.0
Ca_09159_v3 Cicer arietinum L. HOM05D000561 ORTHO05D000514 6.9e-06 55.1 60 51.7
COL.COLO4_31755 Corchorus olitorius HOM05D000561 ORTHO05D000514 6.9e-06 55.1 58 50.0
Duzib187G0760 Durio zibethinus HOM05D002906 ORTHO05D003211 6.9e-06 55.1 43 69.8
C09p13780 Brassica napus HOM05D002906 ORTHO05D003211 9.0e-06 54.7 43 72.1
CiPaw.10G069900 Carya illinoinensis HOM05D000561 ORTHO05D000514 9.0e-06 54.7 60 51.7
CiPaw.11G188400 Carya illinoinensis HOM05D000561 ORTHO05D000514 9.0e-06 54.7 58 51.7
Ca_14896_v3 Cicer arietinum L. HOM05D000280 ORTHO05D000514 9.0e-06 54.7 63 47.6
Thhalv10022586m.g Eutrema salsugineum HOM05D002906 ORTHO05D003211 9.0e-06 54.7 43 72.1
Gohir.A13G138500 Gossypium hirsutum HOM05D000561 ORTHO05D000514 9.0e-06 54.7 58 50.0
Hma1.2p1_0673F.1_g201260 Hydrangea macrophylla HOM05D000561 ORTHO05D000514 9.0e-06 54.7 58 50.0
Hma1.2p1_0743F.1_g211410 Hydrangea macrophylla HOM05D002906 ORTHO05D003211 9.0e-06 54.7 43 67.4
Lsat_1_v5_gn_2_78381 Lactuca sativa HOM05D002906 ORTHO05D003211 9.0e-06 54.7 43 67.4
MD03G1202200 Malus domestica HOM05D000561 ORTHO05D000514 9.0e-06 54.7 58 51.7
MD11G1219500 Malus domestica HOM05D000561 ORTHO05D000514 9.0e-06 54.7 58 51.7
Oeu020118.2 Olea europaea HOM05D000561 ORTHO05D000514 9.0e-06 54.7 58 48.3


User provided reference genes

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