Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034697 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 9.2e-41 169.9 90 100.0
CSS0011141 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 7.8e-32 140.2 85 88.2
Dinv34747 Davidia involucrata HOM05D007546 ORTHO05D009542 9.9e-27 123.2 85 76.5
Actinidia24887 Actinidia chinensis HOM05D007546 ORTHO05D009542 3.7e-26 121.3 85 76.5
Lj2C1174G3 Lonicera japonica HOM05D007546 ORTHO05D009542 7.8e-24 113.6 85 70.6
Hma1.2p1_0257F.1_g103520 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 5.6e-22 107.5 85 65.9
TWI14G0110 Tripterygium wilfordii HOM05D007546 ORTHO05D009542 7.3e-22 107.1 87 67.8
Duzib138G1282 Durio zibethinus HOM05D007546 ORTHO05D009542 1.2e-21 106.3 85 67.1
Gohir.D08G076500 Gossypium hirsutum HOM05D007546 ORTHO05D009542 1.2e-21 106.3 85 65.9
Gorai.004G081100 Gossypium raimondii HOM05D007546 ORTHO05D009542 1.2e-21 106.3 85 65.9
Gohir.A08G068100 Gossypium hirsutum HOM05D007546 ORTHO05D009542 2.8e-21 105.1 85 64.7
vmacro14926 Vaccinium macrocarpon HOM05D007546 ORTHO05D009542 2.8e-21 105.1 85 62.4
Thecc.01G280300 Theobroma cacao HOM05D007546 ORTHO05D009542 6.2e-21 104.0 85 64.7
COL.COLO4_09104 Corchorus olitorius HOM05D007546 ORTHO05D009542 1.4e-20 102.8 87 65.5
Sc05g0004940 Simmondsia chinensis HOM05D007546 ORTHO05D009542 1.4e-20 102.8 85 64.7
Aqoxy2G03310 Aquilegia oxysepala HOM05D007546 ORTHO05D009542 1.8e-20 102.4 85 60.0
Atru.chr5.1426 Acer truncatum HOM05D007546 ORTHO05D009542 6.8e-20 100.5 85 61.2
DCAR_018417 Daucus carota HOM05D007546 ORTHO05D009542 1.2e-19 99.8 85 58.8
Sabra05G0158800 Salix brachista HOM05D007546 ORTHO05D009542 2.6e-19 98.6 85 61.2
GSVIVG01011126001 Vitis vinifera HOM05D007546 ORTHO05D009542 3.4e-19 98.2 85 62.4
Nn2g12733 Nelumbo nucifera HOM05D007546 ORTHO05D009542 9.9e-19 96.7 85 57.6
MD11G1286600 Malus domestica HOM05D007546 ORTHO05D009542 1.3e-18 96.3 85 54.1
Cc01_g19550 Coffea canephora HOM05D007546 ORTHO05D009542 1.7e-18 95.9 86 60.5
MELO3C015843.2 Cucumis melo HOM05D007546 ORTHO05D009542 1.7e-18 95.9 85 56.5
Ca_08577_v3 Cicer arietinum L. HOM05D007546 ORTHO05D009542 2.9e-18 95.1 85 56.5
ClCG09G006970 Citrullus lanatus HOM05D007546 ORTHO05D009542 6.4e-18 94.0 85 56.5
CsaV3_7G028190 Cucumis sativus L. HOM05D007546 ORTHO05D009542 6.4e-18 94.0 85 55.3
Manes.01G208300 Manihot esculenta HOM05D007546 ORTHO05D009542 6.4e-18 94.0 85 61.2
Sed0013948 Sechium edule HOM05D007546 ORTHO05D009542 6.4e-18 94.0 85 54.1
HanXRQChr10g0282741 Helianthus annuus HOM05D007546 ORTHO05D009542 8.4e-18 93.6 85 57.6
PSO170G1280 Papaver somniferum HOM05D007546 ORTHO05D009542 1.1e-17 93.2 85 52.9
Haze_04718 Corylus avellana HOM05D007546 ORTHO05D009542 1.9e-17 92.4 89 62.9
QL12p022024 Quercus lobata HOM05D007546 ORTHO05D009542 2.4e-17 92.0 85 60.0
Hund05346 Selenicereus undatus HOM05D007546 ORTHO05D009542 7.1e-17 90.5 85 52.9
Eucgr.H01486 Eucalyptus grandis HOM05D007546 ORTHO05D009542 9.2e-17 90.1 85 52.9
TPR.G6147 Trifolium pratense HOM05D007546 ORTHO05D009542 1.2e-16 89.7 84 53.6
Glyma.03G153000 Glycine max HOM05D007546 ORTHO05D009542 1.6e-16 89.4 85 52.9
Lsat_1_v5_gn_9_3860 Lactuca sativa HOM05D007546 ORTHO05D009542 1.6e-16 89.4 85 54.1
Psat3g064520 Pisum sativum HOM05D007546 ORTHO05D009542 3.5e-16 88.2 85 51.8
Aa31LG1G9350 Aethionema arabicum HOM05D007546 ORTHO05D009542 4.6e-16 87.8 85 57.6
Hma1.2p1_0257F.1_g103530 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 4.6e-16 87.8 85 58.8
Lj1g0009003 Lotus japonicus HOM05D007546 ORTHO05D009542 6.0e-16 87.4 85 52.9
EL10Ac7g17228 Beta vulgaris HOM05D007546 ORTHO05D009542 1.0e-15 86.7 85 54.1
ECA247G1813 Erigeron canadensis HOM05D007546 ORTHO05D009542 1.0e-15 86.7 85 52.9
Potri.005G208700 Populus trichocarpa HOM05D007546 ORTHO05D009542 1.0e-15 86.7 85 58.8
AL1G12670 Arabidopsis lyrata HOM05D007546 ORTHO05D009542 1.3e-15 86.3 85 57.6
Ciclev10023872m.g Citrus clementina HOM05D007546 ORTHO05D009542 1.3e-15 86.3 85 56.5
Glyma.19G155400 Glycine max HOM05D007546 ORTHO05D009542 1.3e-15 86.3 85 50.6
Peaxi162Scf01622g00012 Petunia axillaris HOM05D007546 ORTHO05D009542 3.0e-15 85.1 85 55.3
Phvul.001G150400 Phaseolus vulgaris HOM05D007546 ORTHO05D009542 3.9e-15 84.7 85 48.2
THA.LOC104801231 Tarenaya hassleriana HOM05D007546 ORTHO05D009542 3.9e-15 84.7 85 57.6
MBI19_g16657_MAGBIO Magnolia biondii HOM05D007546 ORTHO05D009542 6.6e-15 84.0 81 55.6
Nitab4.5_0010448g0030 Nicotiana tabacum HOM05D007546 ORTHO05D009542 6.6e-15 84.0 86 54.7
arahy.Tifrunner.gnm1.ann1.99CH68 Arachis hypogaea HOM05D007546 ORTHO05D009542 8.7e-15 83.6 85 48.2
arahy.Tifrunner.gnm1.ann1.P6ZKNU Arachis hypogaea HOM05D007546 ORTHO05D009542 8.7e-15 83.6 85 48.2
Medtr7g094790 Medicago truncatula HOM05D007546 ORTHO05D009542 8.7e-15 83.6 85 50.6
MSTRG.18229 Avicennia marina HOM05D007546 ORTHO05D009542 1.1e-14 83.2 86 55.8
Oeu012757.1 Olea europaea HOM05D007546 ORTHO05D009542 1.1e-14 83.2 86 53.5
PGR119G0241 Punica granatum HOM05D007546 ORTHO05D009542 1.1e-14 83.2 85 50.6
AUR62043164 Chenopodium quinoa HOM05D007546 ORTHO05D009542 1.9e-14 82.4 85 54.1
Ah.15g091950 Amaranthus hybridus HOM05D007546 ORTHO05D009542 2.5e-14 82.0 82 51.2
CANSAT25G0166 Cannabis sativa HOM05D007546 ORTHO05D009542 2.5e-14 82.0 85 51.8
Nitab4.5_0001028g0010 Nicotiana tabacum HOM05D007546 ORTHO05D009542 2.5e-14 82.0 85 54.1
SalBow4G0341 Salvia bowleyana HOM05D007546 ORTHO05D009542 2.5e-14 82.0 86 54.7
arahy.Tifrunner.gnm1.ann1.N7I060 Arachis hypogaea HOM05D007546 ORTHO05D009542 3.3e-14 81.6 85 47.1
AUR62036823 Chenopodium quinoa HOM05D007546 ORTHO05D009542 3.3e-14 81.6 85 52.9
AUR62038619 Chenopodium quinoa HOM05D007546 ORTHO05D009542 3.3e-14 81.6 85 52.9
CARHR002520 Cardamine hirsuta HOM05D007546 ORTHO05D009542 4.3e-14 81.3 85 54.1
Sp1g02200 Schrenkiella parvula HOM05D007546 ORTHO05D009542 4.3e-14 81.3 85 52.9
Carub.0001s0232 Capsella rubella HOM05D007546 ORTHO05D009542 9.6e-14 80.1 85 51.8
VMungo1383G0744 Vigna mungo HOM05D007546 ORTHO05D009542 9.6e-14 80.1 85 47.1
SGA_v2.0_scaffold1G00465 Striga asiatica HOM05D007546 ORTHO05D009542 1.2e-13 79.7 86 51.2
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 2.1e-13 79.0 85 50.6
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 1.1e-12 76.6 85 48.2
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 1.1e-12 76.6 85 48.2
Thhalv10008478m.g Eutrema salsugineum HOM05D007546 ORTHO05D009542 1.1e-12 76.6 85 49.4
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 1.8e-12 75.9 85 48.2
Prupe.8G241900 Prunus persica HOM05D007546 ORTHO05D009542 1.8e-12 75.9 69 55.1
ATR0626G078 Amborella trichopoda HOM05D007546 ORTHO05D009542 7.6e-11 70.5 85 44.7
Lalb_Chr01g0013761 Lupinus albus HOM05D007546 ORTHO05D009542 2.2e-10 68.9 85 42.4
PGSC0003DMG402012883 Solanum tuberosum HOM05D007546 ORTHO05D009542 3.8e-10 68.2 56 64.3
RcHm_v2.0_Chr6g0291141 Rosa chinensis HOM05D007546 ORTHO05D009542 4.9e-10 67.8 85 40.0
FvH4_2g23671 Fragaria vesca HOM05D007546 ORTHO05D009542 8.4e-10 67.0 85 37.6
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 8.4e-10 67.0 85 37.6
Solyc09g065110.4 Solanum lycopersicum HOM05D007546 ORTHO05D009542 8.4e-10 67.0 56 62.5
Sopen09g026830 Solanum pennellii HOM05D007546 ORTHO05D009542 8.4e-10 67.0 56 62.5
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.1e-09 66.6 85 37.6
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.1e-09 66.6 85 37.6
CAN.G242.7 Capsicum annuum HOM05D007546 ORTHO05D009542 1.2e-08 63.2 85 44.7
Sabra02G0043800 Salix brachista HOM05D005331 ORTHO05D007596 7.8e-08 60.5 85 47.1
Migut.D00289 Erythranthe guttata HOM05D007546 ORTHO05D009542 8.7e-07 57.0 58 51.7
Cpa.g.sc52.28 Carica papaya HOM05D007546 ORTHO05D009542 2.5e-06 55.5 49 55.1
Potri.002G053801 Populus trichocarpa HOM05D007546 ORTHO05D009542 2.5e-06 55.5 49 57.1
AT1G03180 Arabidopsis thaliana HOM05D007546 ORTHO05D009542 4.3e-06 54.7 50 58.0
unitig_61.g26331 Utricularia gibba HOM05D007546 ORTHO05D009542 9.6e-06 53.5 70 45.7


User provided reference genes

Program Settings