Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.2e-43 179.5 92 100.0
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 7.9e-40 166.8 100 90.0
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 5.2e-39 164.1 100 89.0
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.2e-35 152.9 100 83.0
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 7.2e-33 143.7 98 75.5
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 7.2e-33 143.7 98 75.5
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 4.7e-32 141.0 98 75.5
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 8.0e-32 140.2 98 74.5
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.8e-31 139.0 97 75.3
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 5.2e-31 137.5 98 72.4
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 5.2e-31 137.5 100 73.0
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 6.7e-31 137.1 98 72.4
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 1.5e-30 136.0 99 71.7
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 9.7e-30 133.3 99 71.7
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.2e-29 132.1 99 73.7
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 2.2e-29 132.1 99 73.7
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 3.7e-29 131.3 95 73.7
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 6.3e-29 130.6 98 70.4
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 6.3e-29 130.6 99 72.7
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 1.4e-28 129.4 100 71.0
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 1.4e-28 129.4 100 71.0
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 1.4e-28 129.4 100 71.0
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 1.8e-28 129.0 96 68.8
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 1.8e-28 129.0 98 70.4
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 2.4e-28 128.6 100 73.0
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 2.4e-28 128.6 98 71.4
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 3.1e-28 128.3 98 70.4
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 4.1e-28 127.9 100 70.0
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 7.0e-28 127.1 102 68.6
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 9.1e-28 126.7 100 70.0
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 1.2e-27 126.3 98 71.4
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 1.2e-27 126.3 100 69.0
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 1.6e-27 125.9 98 70.4
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 1.6e-27 125.9 99 65.7
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 2.0e-27 125.6 98 69.4
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 2.0e-27 125.6 98 70.4
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.0e-27 125.6 98 71.4
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 2.7e-27 125.2 98 71.4
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.7e-27 125.2 98 70.4
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 2.7e-27 125.2 105 67.6
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 3.5e-27 124.8 100 67.0
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 3.5e-27 124.8 102 67.6
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 4.5e-27 124.4 99 69.7
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 4.5e-27 124.4 100 68.0
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 4.5e-27 124.4 99 70.7
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 4.5e-27 124.4 98 69.4
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 5.9e-27 124.0 96 66.7
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 5.9e-27 124.0 98 68.4
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 5.9e-27 124.0 102 68.6
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 5.9e-27 124.0 100 68.0
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 7.7e-27 123.6 93 69.9
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 1.0e-26 123.2 103 67.0
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 2.2e-26 122.1 99 67.7
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 3.8e-26 121.3 98 69.4
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 3.8e-26 121.3 98 68.4
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 3.8e-26 121.3 100 69.0
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 3.8e-26 121.3 98 66.3
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 5.0e-26 120.9 98 66.3
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 5.0e-26 120.9 99 65.7
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 5.0e-26 120.9 100 67.0
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 8.5e-26 120.2 99 67.7
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 8.5e-26 120.2 100 70.0
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 8.5e-26 120.2 100 67.0
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 8.5e-26 120.2 97 66.0
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 1.5e-25 119.4 98 65.3
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 1.5e-25 119.4 98 65.3
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 1.5e-25 119.4 98 65.3
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 1.5e-25 119.4 98 65.3
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 1.5e-25 119.4 101 68.3
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 1.5e-25 119.4 97 66.0
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 1.5e-25 119.4 95 65.3
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 1.5e-25 119.4 95 65.3
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 1.9e-25 119.0 100 69.0
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 1.9e-25 119.0 99 64.6
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 1.9e-25 119.0 98 65.3
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 1.9e-25 119.0 98 68.4
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 1.9e-25 119.0 99 66.7
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 2.5e-25 118.6 98 65.3
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 3.2e-25 118.2 100 65.0
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 4.2e-25 117.9 106 62.3
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 5.5e-25 117.5 98 65.3
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 5.5e-25 117.5 98 64.3
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 5.5e-25 117.5 98 64.3
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 5.5e-25 117.5 99 64.6
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 7.2e-25 117.1 104 62.5
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 9.4e-25 116.7 100 66.0
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 1.2e-24 116.3 98 65.3
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 1.2e-24 116.3 97 64.9
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 1.2e-24 116.3 97 64.9
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 1.2e-24 116.3 97 64.9
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 2.7e-24 115.2 99 63.6
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 2.7e-24 115.2 104 61.5
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 6.1e-24 114.0 99 64.6
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 8.0e-24 113.6 99 62.6
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 1.8e-23 112.5 103 62.1
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 5.2e-23 110.9 99 62.6
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 6.8e-23 110.5 100 65.0
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 8.8e-23 110.2 104 60.6
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 8.8e-23 110.2 100 64.0
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 8.8e-23 110.2 98 60.2
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 8.8e-23 110.2 98 66.3
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 1.5e-22 109.4 96 61.5
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 2.0e-22 109.0 97 60.8
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 2.0e-22 109.0 98 62.2
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 3.4e-22 108.2 98 60.2
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 4.4e-22 107.8 106 58.5
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 7.5e-22 107.1 98 59.2
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.3e-21 106.3 106 57.5
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 2.2e-21 105.5 100 60.0
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 6.3e-21 104.0 90 63.3
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 1.6e-19 99.4 77 66.2
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 2.0e-19 99.0 101 55.4
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 4.5e-19 97.8 96 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 1.0e-18 96.7 96 54.2
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 6.5e-18 94.0 96 55.2
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 3.6e-16 88.2 87 56.3
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 8.0e-16 87.0 87 56.3
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 2.0e-14 82.4 72 55.6
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 2.0e-14 82.4 99 49.5
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 2.2e-13 79.0 88 51.1
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 1.4e-12 76.3 44 81.8
Actinidia35657 Actinidia chinensis HOM05D006064 ORTHO05D007619 9.2e-12 73.6 90 51.1
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 4.5e-11 71.2 76 51.3
Peaxi162Scf00015g00005 Petunia axillaris HOM05D006064 ORTHO05D007619 4.5e-11 71.2 60 65.0
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 1.3e-10 69.7 74 56.8
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 1.1e-09 66.6 69 53.6
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 5.6e-09 64.3 74 47.3
Actinidia13476 Actinidia chinensis HOM05D006064 ORTHO05D007619 9.5e-09 63.5 64 57.8


User provided reference genes

Program Settings