Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1782.7 928 100.0
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1763.8 928 99.0
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1291.6 932 76.0
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 0.0e+00 1147.9 931 69.0
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 0.0e+00 1137.9 931 68.7
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 0.0e+00 1124.4 898 68.9
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 0.0e+00 1100.1 919 67.6
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.2e-310 1068.9 940 64.9
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 6.5e-291 1004.2 1010 58.0
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 5.2e-288 994.6 926 61.1
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-286 989.9 783 71.0
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.6e-284 983.0 949 58.3
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 3.2e-282 975.3 946 59.9
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 4.2e-282 974.9 937 59.3
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.8e-277 959.5 951 59.1
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 5.4e-277 958.0 942 58.7
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 7.0e-277 957.6 943 58.9
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.2e-276 956.8 947 57.9
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.5e-274 949.9 947 56.7
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.5e-274 947.2 930 60.4
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.2e-273 946.8 1000 54.8
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.8e-273 945.7 948 58.9
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 6.8e-272 941.0 947 57.8
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 5.4e-269 931.4 947 55.3
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 3.7e-262 908.7 947 57.3
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 4.1e-261 905.2 679 74.5
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 4.1e-261 905.2 975 57.1
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.9e-258 896.3 944 57.2
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-258 896.3 939 57.3
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-257 892.9 940 55.0
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.6e-257 892.1 940 55.0
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-256 890.2 938 57.2
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.8e-256 887.9 940 54.7
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.6e-255 885.9 942 55.8
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 7.5e-255 884.4 940 55.0
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 2.4e-253 879.4 934 55.6
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 3.2e-253 879.0 940 56.9
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.0e-253 877.9 937 56.7
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 7.0e-253 877.9 985 55.6
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-252 875.9 938 56.5
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 6.6e-251 871.3 947 55.8
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.6e-250 868.2 970 55.3
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.4e-248 863.6 960 53.3
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 4.9e-246 855.1 954 55.2
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.4e-245 852.8 892 56.2
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.6e-244 848.6 941 54.1
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.1e-240 837.4 940 53.3
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 5.2e-240 835.1 931 53.0
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.5e-239 833.6 892 55.8
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 5.8e-239 831.6 940 53.1
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.2e-236 823.9 913 52.6
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.6e-236 823.5 951 54.3
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.7e-236 822.8 949 51.9
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.5e-236 822.4 947 52.0
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 4.6e-236 822.0 945 51.6
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.0e-236 821.6 860 53.7
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 7.8e-236 821.2 942 52.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.0e-235 820.8 897 52.4
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.3e-235 819.7 858 53.7
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.9e-235 818.9 942 52.1
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 8.1e-233 811.2 925 53.2
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.8e-232 810.1 853 55.3
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 9.0e-232 807.7 913 54.7
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.2e-231 807.4 929 52.2
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-231 806.2 946 51.2
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.1e-229 800.8 900 52.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.4e-229 800.4 853 55.0
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.4e-229 799.7 922 54.2
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 7.8e-228 794.7 875 54.2
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.1e-225 786.6 921 52.7
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 3.6e-225 785.8 909 52.7
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.6e-225 785.8 968 52.1
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 5.3e-224 781.9 920 52.5
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 7.6e-223 778.1 916 52.3
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.2e-222 776.5 930 51.5
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.2e-222 776.5 918 52.0
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 6.0e-220 768.5 949 50.8
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.5e-218 763.1 934 50.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.6e-217 760.4 927 51.3
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 6.2e-217 758.4 1026 47.0
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.1e-216 757.7 694 64.3
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 3.1e-216 756.1 945 51.1
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 2.6e-215 753.1 922 49.5
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.5e-215 752.3 920 51.8
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 5.8e-215 751.9 900 51.3
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 9.3e-213 744.6 936 50.4
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 4.3e-210 735.7 941 50.5
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.3e-209 734.2 939 50.2
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.6e-209 733.8 945 49.9
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.8e-209 733.0 974 49.5
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 3.8e-206 722.6 1017 45.6
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.5e-205 718.8 942 48.6
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.6e-201 707.2 975 49.3
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.8e-198 696.0 942 48.4
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 6.1e-196 688.7 973 46.9
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 6.1e-196 688.7 869 50.3
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 2.3e-195 686.8 929 48.7
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.1e-194 684.5 933 48.0
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-191 673.7 917 46.9
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-188 664.5 678 56.5
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-188 663.7 898 47.8
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 3.9e-187 659.4 929 48.0
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.5e-186 657.5 854 48.9
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.8e-184 650.6 622 60.6
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.1e-178 631.3 900 47.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.8e-176 624.0 884 46.2
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 7.7e-175 618.6 961 43.6
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 7.7e-175 618.6 864 47.8
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.0e-174 618.2 880 45.9
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 3.2e-173 613.2 953 43.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.6e-170 603.6 944 43.1
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 5.7e-170 602.4 869 45.6
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.4e-168 597.8 694 51.3
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 9.1e-168 595.1 873 45.4
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.3e-166 591.3 958 42.6
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.6e-164 583.2 874 44.7
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.3e-161 574.7 974 40.5
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.6e-159 567.8 694 52.9
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 5.9e-159 565.8 927 43.3
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.5e-157 561.2 504 61.7
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 2.5e-157 560.5 957 42.2
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.2e-156 558.1 912 45.1
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 3.6e-156 556.6 955 42.0
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 3.6e-156 556.6 955 42.0
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 6.1e-156 555.8 953 41.9
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 4.9e-153 546.2 954 41.9
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 8.3e-153 545.4 954 41.5
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.1e-152 545.0 880 44.2
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 4.1e-152 543.1 947 41.2
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 9.2e-152 542.0 957 40.8
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.2e-151 541.6 964 41.7
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 5.9e-151 539.3 947 41.3
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 6.6e-150 535.8 937 41.9
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.2e-148 531.6 935 41.4
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 6.8e-147 525.8 778 42.7
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 7.5e-138 495.7 466 60.7
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.2e-136 490.3 959 39.4
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 9.5e-133 478.8 896 39.8
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.7e-132 476.5 635 47.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.8e-131 474.6 880 38.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.4e-130 469.9 917 37.9
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 7.8e-127 459.1 870 41.8
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.0e-122 444.5 873 40.7
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.8e-121 440.3 333 71.2
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.1e-108 397.9 537 46.0
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.8e-105 387.1 440 53.6
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 5.6e-101 373.2 623 44.0
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.2e-96 357.5 882 34.4
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 7.4e-93 346.3 965 34.3
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.1e-88 332.4 288 62.5
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.6e-87 327.0 771 35.7
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.8e-84 317.8 457 45.7
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.8e-84 317.0 828 33.0
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.7e-76 292.0 762 33.2
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 4.8e-76 290.4 383 46.2
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 6.3e-68 263.5 349 46.4
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 3.6e-63 247.7 225 60.9
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.4e-62 245.7 419 41.8
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 6.7e-62 243.4 957 28.7
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.3e-60 239.2 841 30.2
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.8e-60 238.0 284 50.4
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.6e-47 195.7 282 48.6
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 4.7e-47 194.1 495 30.7
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.2e-45 189.5 548 31.6
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.2e-44 185.3 266 46.2
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.2e-42 179.5 111 74.8
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.0e-38 164.9 186 48.9
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.6e-34 152.5 265 40.4
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.3e-32 144.4 117 66.7
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 2.8e-31 141.7 109 64.2
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-27 129.8 148 50.0
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.1e-23 115.5 122 52.5
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.6e-23 114.8 118 55.9
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.5e-21 109.4 90 73.3
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.3e-17 95.5 134 40.3
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 9.9e-13 80.1 144 40.3
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-11 76.6 44 72.7
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 1.4e-11 76.3 125 40.8
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-10 73.2 148 37.8
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.7e-09 69.3 122 38.5
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 5.1e-09 67.8 123 32.5
Medtr2g449940 Medicago truncatula HOM05D003655 ORTHO05D004065 7.3e-08 63.9 106 41.5
AUR62012685 Chenopodium quinoa HOM05D000561 ORTHO05D000514 3.1e-06 58.5 149 28.9
AUR62021972 Chenopodium quinoa HOM05D000561 ORTHO05D000514 3.1e-06 58.5 149 28.9


User provided reference genes

Program Settings