Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 4.2e-65 251.5 158 98.1
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 4.2e-65 251.5 158 100.0
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 4.2e-65 251.5 158 100.0
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 9.4e-57 223.8 127 92.9
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 9.4e-57 223.8 127 92.9
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.2e-56 223.4 156 91.7
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 5.2e-55 218.0 152 90.8
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.3e-53 213.4 127 88.2
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 2.8e-53 212.2 151 90.1
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 4.8e-53 211.5 125 88.8
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 6.3e-53 211.1 156 87.8
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 6.3e-53 211.1 156 87.8
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.1e-52 210.3 154 86.4
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.4e-52 209.9 155 89.7
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.3e-52 208.0 126 87.3
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 5.3e-52 208.0 127 88.2
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.2e-51 206.8 126 87.3
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.6e-51 206.5 126 86.5
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.6e-51 206.5 154 86.4
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.6e-51 206.5 128 85.9
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.6e-51 206.5 124 88.7
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.7e-51 205.7 120 89.2
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 5.9e-51 204.5 127 84.3
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 7.7e-51 204.1 120 88.3
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 7.7e-51 204.1 157 82.8
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.0e-50 203.8 125 86.4
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 1.7e-50 203.0 123 86.2
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 2.2e-50 202.6 124 86.3
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.9e-50 202.2 120 88.3
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 2.9e-50 202.2 156 82.1
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 3.8e-50 201.8 129 83.7
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 5.0e-50 201.4 123 86.2
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 6.5e-50 201.1 150 82.7
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 6.5e-50 201.1 127 85.8
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 6.5e-50 201.1 124 86.3
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 8.5e-50 200.7 123 84.6
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 8.5e-50 200.7 127 81.9
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.1e-49 200.3 119 88.2
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 1.5e-49 199.9 125 82.4
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 1.5e-49 199.9 125 82.4
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 1.9e-49 199.5 125 82.4
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.5e-49 199.1 154 85.7
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 2.5e-49 199.1 123 83.7
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 2.5e-49 199.1 123 85.4
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 3.2e-49 198.7 124 85.5
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 3.2e-49 198.7 158 80.4
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 3.2e-49 198.7 124 86.3
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 3.2e-49 198.7 123 84.6
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.2e-49 198.4 151 86.8
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 4.2e-49 198.4 123 85.4
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 5.5e-49 198.0 155 83.2
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 7.2e-49 197.6 126 83.3
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 9.4e-49 197.2 127 81.1
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 9.4e-49 197.2 121 84.3
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 9.4e-49 197.2 126 82.5
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.2e-48 196.8 139 77.7
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 2.1e-48 196.1 122 84.4
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 4.7e-48 194.9 121 84.3
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 6.1e-48 194.5 127 82.7
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.0e-47 193.7 152 79.6
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.0e-47 193.7 157 81.5
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 2.3e-47 192.6 124 79.8
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 2.3e-47 192.6 156 80.8
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 2.3e-47 192.6 121 83.5
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.3e-47 192.6 123 83.7
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 4.0e-47 191.8 152 82.2
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 8.8e-47 190.7 157 80.3
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 8.8e-47 190.7 153 82.4
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 1.2e-46 190.3 127 80.3
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.5e-46 189.9 153 76.5
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.0e-46 189.5 121 78.5
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 2.0e-46 189.5 121 79.3
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.4e-46 188.7 127 76.4
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.4e-46 188.7 127 76.4
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 4.4e-46 188.3 153 71.2
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 4.4e-46 188.3 119 80.7
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 4.4e-46 188.3 121 80.2
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 7.5e-46 187.6 121 78.5
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 9.8e-46 187.2 153 73.2
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 1.7e-45 186.4 121 78.5
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 1.7e-45 186.4 121 77.7
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 1.7e-45 186.4 123 78.9
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 2.2e-45 186.0 123 82.1
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 2.8e-45 185.7 122 76.2
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 3.7e-45 185.3 121 76.9
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 4.8e-45 184.9 153 72.5
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 6.3e-45 184.5 123 76.4
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 6.3e-45 184.5 121 79.3
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 1.1e-44 183.7 121 76.9
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 1.1e-44 183.7 121 76.9
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 1.1e-44 183.7 121 76.9
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 1.4e-44 183.3 152 76.3
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 1.4e-44 183.3 116 81.9
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.8e-44 183.0 124 75.8
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 2.4e-44 182.6 121 76.0
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 2.4e-44 182.6 121 77.7
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 4.1e-44 181.8 121 75.2
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 7.0e-44 181.0 148 76.4
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 9.1e-44 180.6 119 77.3
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 2.7e-43 179.1 119 77.3
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.7e-43 179.1 119 77.3
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.9e-43 177.9 119 75.6
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 7.7e-43 177.6 130 72.3
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.0e-42 177.2 156 75.6
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.3e-42 176.8 123 78.9
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 2.9e-42 175.6 124 73.4
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 5.0e-42 174.9 233 58.8
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.1e-41 173.7 157 61.1
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 1.5e-41 173.3 121 73.6
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 4.2e-41 171.8 208 52.9
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 2.3e-39 166.0 103 86.4
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.0e-39 165.6 121 68.6
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.2e-38 163.7 127 74.8
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 1.2e-38 163.7 121 67.8
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 1.5e-38 163.3 118 69.5
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 2.0e-38 162.9 121 69.4
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.6e-38 162.5 94 89.4
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 9.8e-38 160.6 103 82.5
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 2.2e-37 159.5 100 84.0
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 4.9e-37 158.3 127 68.5
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 4.9e-37 158.3 106 79.2
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 4.1e-36 155.2 121 67.8
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 6.6e-34 147.9 120 63.3
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 1.5e-33 146.7 91 84.6
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 9.5e-33 144.1 125 58.4
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.2e-32 143.7 121 61.2
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.0e-31 139.0 121 58.7
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 7.5e-30 134.4 83 85.5
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 2.9e-29 132.5 123 56.9
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 7.0e-28 127.9 120 54.2
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 3.6e-24 115.5 91 64.8
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 3.6e-24 115.5 91 64.8
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.8e-23 113.2 91 65.9
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.3e-23 112.8 101 64.4
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.9e-20 103.2 100 62.0
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 2.0e-19 99.8 65 76.9
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 4.1e-12 75.5 50 70.0
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 5.4e-12 75.1 70 64.3
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 7.1e-12 74.7 83 57.8
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 7.1e-12 74.7 83 57.8
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 8.6e-10 67.8 47 72.3


User provided reference genes

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