Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034461 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 3.3e-214 748.4 473 100.0
CSS0008137 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 2.2e-146 523.1 445 77.3
CSS0005827 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 3.8e-146 522.3 459 74.5
CSS0041477 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 1.8e-132 476.9 447 72.9
Dinv41398 Davidia involucrata HOM05D003779 ORTHO05D002678 5.4e-124 448.7 460 67.6
Actinidia04285 Actinidia chinensis HOM05D003779 ORTHO05D002678 4.4e-118 429.1 460 57.2
Actinidia23546 Actinidia chinensis HOM05D003779 ORTHO05D002678 4.9e-117 425.6 457 64.6
Dinv42884 Davidia involucrata HOM05D003779 ORTHO05D002678 6.2e-112 408.7 459 61.0
Rhsim01G0045400 Rhododendron simsii HOM05D003779 ORTHO05D002678 1.6e-104 384.0 458 56.6
Rhsim01G0036200 Rhododendron simsii HOM05D003779 ORTHO05D002678 2.1e-104 383.6 458 56.6
Dinv43216 Davidia involucrata HOM05D003779 ORTHO05D002678 1.2e-96 357.8 360 66.9
Haze_19235 Corylus avellana HOM05D003779 ORTHO05D002678 5.1e-90 335.9 461 53.4
Cfa020847 Carpinus fangiana HOM05D003779 ORTHO05D002678 6.6e-90 335.5 461 54.7
QL02p092676 Quercus lobata HOM05D003779 ORTHO05D002678 4.3e-89 332.8 462 50.9
Ciclev10007258m.g Citrus clementina HOM05D003779 ORTHO05D002678 6.2e-88 328.9 462 46.3
Prupe.7G260100 Prunus persica HOM05D003779 ORTHO05D002678 1.5e-86 324.3 460 47.4
RcHm_v2.0_Chr2g0085981 Rosa chinensis HOM05D003779 ORTHO05D002678 7.6e-86 322.0 461 45.3
Lj9C714G7 Lonicera japonica HOM05D003779 ORTHO05D002678 1.1e-84 318.2 469 46.9
FvH4_1g01180 Fragaria vesca HOM05D003779 ORTHO05D002678 3.0e-82 310.1 456 44.3
FAN28G2365 Fragaria x ananassa HOM05D003779 ORTHO05D002678 3.9e-82 309.7 456 44.3
FAN19G1766 Fragaria x ananassa HOM05D003779 ORTHO05D002678 5.1e-82 309.3 456 44.3
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 4.8e-80 302.8 456 46.3
CANSAT11G0231 Cannabis sativa HOM05D003779 ORTHO05D002678 1.4e-79 301.2 452 46.7
CiPaw.16G114900 Carya illinoinensis HOM05D003779 ORTHO05D002678 1.4e-79 301.2 463 42.5
FAN26G3236 Fragaria x ananassa HOM05D003779 ORTHO05D002678 6.9e-79 298.9 457 44.2
Manes.14G111700 Manihot esculenta HOM05D003779 ORTHO05D002678 4.9e-77 292.7 456 45.8
CiPaw.15G174200 Carya illinoinensis HOM05D003779 ORTHO05D002678 4.3e-73 279.6 461 44.5
Potri.018G110100 Populus trichocarpa HOM05D003779 ORTHO05D002678 9.6e-73 278.5 459 46.0
TWI34G0110 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 3.7e-72 276.6 458 44.3
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 6.2e-72 275.8 469 44.8
TWI63G1714 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 1.4e-71 274.6 454 41.6
MD02G1009900 Malus domestica HOM05D003779 ORTHO05D002678 5.3e-71 272.7 461 52.9
Thecc.09G033700 Theobroma cacao HOM05D003779 ORTHO05D002678 1.2e-70 271.6 453 45.5
Atru.chr7.134 Acer truncatum HOM05D003779 ORTHO05D002678 2.0e-70 270.8 481 43.7
EL10Ac8g18849 Beta vulgaris HOM05D003779 ORTHO05D002678 2.0e-70 270.8 466 43.8
Oeu050477.1 Olea europaea HOM05D003779 ORTHO05D002678 7.6e-70 268.9 460 42.6
Potri.006G187400 Populus trichocarpa HOM05D003779 ORTHO05D002678 1.1e-68 265.0 459 46.0
Nn8g39802 Nelumbo nucifera HOM05D003779 ORTHO05D002678 7.9e-67 258.8 471 46.9
DCAR_019379 Daucus carota HOM05D003779 ORTHO05D002678 3.0e-66 256.9 459 46.0
AUR62043250 Chenopodium quinoa HOM05D003779 ORTHO05D002678 3.9e-66 256.5 460 43.9
Sc08g0004970 Simmondsia chinensis HOM05D003779 ORTHO05D002678 5.1e-66 256.1 460 43.3
Peaxi162Scf00347g00821 Petunia axillaris HOM05D003779 ORTHO05D002678 6.7e-66 255.8 451 41.9
TAR625G1002 Trochodendron aralioides HOM05D003779 ORTHO05D002678 6.7e-66 255.8 466 44.0
Cpa.g.sc46.127 Carica papaya HOM05D003779 ORTHO05D002678 8.7e-66 255.4 458 40.4
Manes.06G037900 Manihot esculenta HOM05D003779 ORTHO05D002678 2.5e-65 253.8 454 46.0
Duzib187G1590 Durio zibethinus HOM05D003779 ORTHO05D002678 8.2e-64 248.8 462 45.0
ClCG06G012240 Citrullus lanatus HOM05D003779 ORTHO05D002678 1.1e-63 248.4 454 39.0
vmacro06092 Vaccinium macrocarpon HOM05D003779 ORTHO05D002678 1.1e-63 248.4 450 44.2
CsaV3_1G028740 Cucumis sativus L. HOM05D003779 ORTHO05D002678 4.5e-62 243.0 458 41.3
Sabra06G0142300 Salix brachista HOM05D003779 ORTHO05D002678 2.9e-61 240.4 459 42.5
Sed0025790 Sechium edule HOM05D003779 ORTHO05D002678 2.9e-61 240.4 453 38.2
Sabra06G0143300 Salix brachista HOM05D003779 ORTHO05D002678 5.0e-61 239.6 459 42.5
TAR636G1028 Trochodendron aralioides HOM05D003779 ORTHO05D002678 1.1e-60 238.4 463 47.1
COL.COLO4_18776 Corchorus olitorius HOM05D003779 ORTHO05D002678 2.5e-60 237.3 461 39.3
Sed0010991 Sechium edule HOM05D003779 ORTHO05D002678 4.2e-60 236.5 474 46.6
Gorai.001G031400 Gossypium raimondii HOM05D003779 ORTHO05D002678 1.2e-59 235.0 462 44.2
Nitab4.5_0001201g0070 Nicotiana tabacum HOM05D003779 ORTHO05D002678 1.2e-59 235.0 461 40.3
AUR62039744 Chenopodium quinoa HOM05D003779 ORTHO05D002678 3.6e-59 233.4 466 40.8
Duzib168G2294 Durio zibethinus HOM05D003779 ORTHO05D002678 4.6e-59 233.0 488 38.7
Gorai.013G217400 Gossypium raimondii HOM05D003779 ORTHO05D002678 1.5e-57 228.0 451 43.5
Sabra18G0093100 Salix brachista HOM05D003779 ORTHO05D002678 1.5e-57 228.0 459 41.0
Sopen07g001470 Solanum pennellii HOM05D003779 ORTHO05D002678 3.3e-57 226.9 461 43.2
MELO3C010242.2 Cucumis melo HOM05D003779 ORTHO05D002678 2.2e-56 224.2 459 38.3
Gohir.A07G026300 Gossypium hirsutum HOM05D003779 ORTHO05D002678 2.4e-55 220.7 443 42.9
Gohir.D07G030200 Gossypium hirsutum HOM05D003779 ORTHO05D002678 4.1e-55 219.9 461 42.7
Gohir.A13G184900 Gossypium hirsutum HOM05D003779 ORTHO05D002678 5.3e-55 219.5 451 41.7
Gohir.D05G053000 Gossypium hirsutum HOM05D003779 ORTHO05D002678 2.6e-54 217.2 456 37.5
Gohir.D13G191400 Gossypium hirsutum HOM05D003779 ORTHO05D002678 2.6e-54 217.2 451 39.0
Gohir.A05G051500 Gossypium hirsutum HOM05D003779 ORTHO05D002678 4.5e-54 216.5 451 37.7
PGR102G2779 Punica granatum HOM05D003779 ORTHO05D002678 1.3e-53 214.9 462 38.7
Gorai.009G054800 Gossypium raimondii HOM05D003779 ORTHO05D002678 1.7e-53 214.5 451 37.3
Ah.14g078430 Amaranthus hybridus HOM05D003779 ORTHO05D002678 3.8e-53 213.4 462 37.2
Aqoxy7G03464 Aquilegia oxysepala HOM05D003779 ORTHO05D002678 1.4e-52 211.5 464 42.0
MBI15_g10629_MAGBIO Magnolia biondii HOM05D003779 ORTHO05D002678 3.2e-52 210.3 453 53.2
Solyc07g005320.3 Solanum lycopersicum HOM05D003779 ORTHO05D002678 5.5e-52 209.5 436 44.5
Nitab4.5_0008534g0010 Nicotiana tabacum HOM05D003779 ORTHO05D002678 6.7e-50 202.6 487 41.3
VMungo1309G0106 Vigna mungo HOM05D003779 ORTHO05D002678 6.7e-50 202.6 458 39.3
CAN.G1116.7 Capsicum annuum HOM05D003779 ORTHO05D002678 2.0e-49 201.1 477 41.7
Eucgr.C00363 Eucalyptus grandis HOM05D003779 ORTHO05D002678 5.7e-49 199.5 454 45.6
Phvul.009G194000 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 5.7e-49 199.5 458 39.1
Lj6g0022686 Lotus japonicus HOM05D003779 ORTHO05D002678 2.2e-48 197.6 457 35.4
Ah.14g078210 Amaranthus hybridus HOM05D003779 ORTHO05D002678 8.2e-48 195.7 466 35.6
Lalb_Chr08g0234021 Lupinus albus HOM05D003779 ORTHO05D002678 9.4e-44 182.2 451 40.1
GSVIVG01023597001 Vitis vinifera HOM05D003779 ORTHO05D002678 2.7e-43 180.6 208 54.3
Lalb_Chr08g0233951 Lupinus albus HOM05D003779 ORTHO05D002678 1.4e-42 178.3 449 41.4
Psat1g022120 Pisum sativum HOM05D003779 ORTHO05D002678 1.1e-41 175.3 451 39.0
arahy.Tifrunner.gnm1.ann1.MXR4WM Arachis hypogaea HOM05D003779 ORTHO05D002678 1.5e-41 174.9 451 33.5
arahy.Tifrunner.gnm1.ann1.Y7PKX5 Arachis hypogaea HOM05D003779 ORTHO05D002678 1.1e-39 168.7 455 33.6
Medtr2g450210 Medicago truncatula HOM05D003779 ORTHO05D002678 1.8e-39 167.9 346 37.9
Ca_14533_v3 Cicer arietinum L. HOM05D003779 ORTHO05D002678 2.4e-39 167.5 450 41.1
PSO170G5719 Papaver somniferum HOM05D003779 ORTHO05D002678 3.8e-37 160.2 455 37.4
PSO017G3118 Papaver somniferum HOM05D003779 ORTHO05D002678 1.9e-36 157.9 456 39.3
Glyma.09G097600 Glycine max HOM05D003779 ORTHO05D002678 2.5e-36 157.5 345 37.7
ECA234G1613 Erigeron canadensis HOM05D003779 ORTHO05D002678 4.2e-36 156.8 450 31.6
Sp6g19720 Schrenkiella parvula HOM05D003779 ORTHO05D002678 1.4e-34 151.8 403 32.5
Glyma.15G205600 Glycine max HOM05D003779 ORTHO05D002678 4.0e-34 150.2 454 34.4
ATR0739G197 Amborella trichopoda HOM05D003779 ORTHO05D002678 3.3e-33 147.1 305 38.7
Lalb_Chr13g0300951 Lupinus albus HOM05D003779 ORTHO05D002678 1.3e-32 145.2 451 31.3
DCAR_020882 Daucus carota HOM05D003779 ORTHO05D002678 3.7e-32 143.7 474 32.5
Thhalv10012479m.g Eutrema salsugineum HOM05D003779 ORTHO05D002678 4.8e-32 143.3 407 32.2
VMungo1215G0704 Vigna mungo HOM05D003779 ORTHO05D002678 1.4e-31 141.7 459 29.6
Oeu026546.1 Olea europaea HOM05D003779 ORTHO05D002678 1.6e-30 138.3 450 31.6
THA.LOC104813541 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 3.8e-29 133.7 393 30.8
AL8G34140 Arabidopsis lyrata HOM05D003779 ORTHO05D002678 6.5e-29 132.9 399 30.8
Carub.0008s1859 Capsella rubella HOM05D003779 ORTHO05D002678 6.5e-29 132.9 398 32.4
TPR.G35880 Trifolium pratense HOM05D003779 ORTHO05D002678 4.2e-28 130.2 461 32.3
Phvul.003G157600 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 1.6e-27 128.3 488 27.5
AT5G58040 Arabidopsis thaliana HOM05D003779 ORTHO05D002678 2.3e-26 124.4 399 30.8
SalBow1G3877 Salvia bowleyana HOM05D003779 ORTHO05D002678 2.6e-25 120.9 460 31.1
CARHR271850 Cardamine hirsuta HOM05D003779 ORTHO05D002678 1.7e-24 118.2 399 32.1
Aa31LG3G13870 Aethionema arabicum HOM05D003779 ORTHO05D002678 4.8e-24 116.7 401 35.4
A10p16130 Brassica napus HOM05D003779 ORTHO05D002678 1.1e-23 115.5 409 28.4
BolC9t57849H Brassica oleracea HOM05D003779 ORTHO05D002678 1.8e-23 114.8 411 32.1
C09p49960 Brassica napus HOM05D003779 ORTHO05D002678 3.1e-23 114.0 411 32.1
BcaB08g36155 Brassica carinata HOM05D003779 ORTHO05D002678 7.0e-23 112.8 410 28.8
BcaC04g19912 Brassica carinata HOM05D003779 ORTHO05D002678 3.5e-22 110.5 411 31.9
unitig_0.g2698 Utricularia gibba HOM05D003779 ORTHO05D002678 3.5e-22 110.5 448 39.3
BraA10t43616Z Brassica rapa HOM05D003779 ORTHO05D002678 1.7e-21 108.2 409 27.6
Lsat_1_v5_gn_5_91481 Lactuca sativa HOM05D003779 ORTHO05D002678 8.6e-21 105.9 457 29.8
CDE05G1362 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 4.7e-19 100.1 459 29.4
SalBow1G6151 Salvia bowleyana HOM05D003779 ORTHO05D002678 2.3e-18 97.8 445 35.3
Zm00001eb215820 Zea mays HOM05D003779 ORTHO05D002678 3.7e-16 90.5 368 36.4
SHI02627 Sapria himalayana HOM05D003779 ORTHO05D002678 4.9e-16 90.1 462 28.8
A03p12430 Brassica napus HOM05D003779 ORTHO05D002678 8.3e-16 89.4 400 29.5
Zm00001eb055800 Zea mays HOM05D003779 ORTHO05D002678 7.8e-14 82.8 365 29.6
BcaB01g04473 Brassica carinata HOM05D003779 ORTHO05D002678 2.9e-13 80.9 401 27.9
THA.LOC104817824 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 1.5e-12 78.6 401 34.4
BraA03t10557Z Brassica rapa HOM05D003779 ORTHO05D002678 5.6e-12 76.6 301 32.2
Os03g0725100 Oryza sativa ssp. japonica HOM05D003779 ORTHO05D002678 1.2e-11 75.5 303 38.9
C03p14630 Brassica napus HOM05D003779 ORTHO05D002678 1.8e-10 71.6 400 27.5
Migut.J01330 Erythranthe guttata HOM05D003779 ORTHO05D002678 6.8e-10 69.7 275 34.9
BolC3t13903H Brassica oleracea HOM05D003779 ORTHO05D002678 2.0e-09 68.2 400 27.2
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.2e-06 58.9 124 41.9
Dinv17810 Davidia involucrata HOM05D003779 ORTHO05D002678 4.6e-06 57.0 281 28.1
vmacro05800 Vaccinium macrocarpon HOM05D003779 ORTHO05D002678 7.8e-06 56.2 182 38.5


User provided reference genes

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