Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003480 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 3.3e-32 141.0 66 100.0
CSS0034310 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 3.3e-32 141.0 66 100.0
CSS0006143 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.8e-31 137.9 66 98.5
CSS0021522 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.8e-31 137.9 66 98.5
CSS0042924 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 8.5e-28 126.3 63 92.1
CSS0046460 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 1.1e-27 125.9 63 92.1
MSTRG.18133 Avicennia marina HOM05D003197 ORTHO05D003769 3.8e-20 100.9 50 96.0
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 3.8e-20 100.9 50 96.0
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 3.8e-20 100.9 50 96.0
Oeu008339.1 Olea europaea HOM05D003197 ORTHO05D003769 5.0e-20 100.5 50 94.0
Actinidia21429 Actinidia chinensis HOM05D003197 ORTHO05D003769 6.6e-20 100.1 50 94.0
CAN.G1280.13 Capsicum annuum HOM05D003197 ORTHO05D003769 6.6e-20 100.1 50 94.0
Lalb_Chr02g0146551 Lupinus albus HOM05D003197 ORTHO05D003769 6.6e-20 100.1 50 94.0
Solyc06g009820.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 6.6e-20 100.1 50 94.0
CANSAT80G1297 Cannabis sativa HOM05D003197 ORTHO05D003769 8.6e-20 99.8 50 94.0
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 8.6e-20 99.8 50 94.0
Lsat_1_v5_gn_8_164740 Lactuca sativa HOM05D003197 ORTHO05D003769 8.6e-20 99.8 50 94.0
Rhsim06G0161500 Rhododendron simsii HOM05D003197 ORTHO05D003769 8.6e-20 99.8 50 94.0
Rhsim06G0161700 Rhododendron simsii HOM05D003197 ORTHO05D003769 8.6e-20 99.8 50 94.0
Rhsim07G0104500 Rhododendron simsii HOM05D003197 ORTHO05D003769 8.6e-20 99.8 50 94.0
Hund05454 Selenicereus undatus HOM05D003197 ORTHO05D003769 8.6e-20 99.8 50 94.0
SGA_v2.0_scaffold2G01379 Striga asiatica HOM05D003197 ORTHO05D003769 8.6e-20 99.8 50 94.0
SGA_v2.0_scaffold334G49028 Striga asiatica HOM05D003197 ORTHO05D003769 8.6e-20 99.8 50 94.0
TWI23G1200 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 8.6e-20 99.8 50 94.0
TWI59G0305 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 8.6e-20 99.8 50 94.0
Manes.01G223200 Manihot esculenta HOM05D003197 ORTHO05D003769 1.1e-19 99.4 50 92.0
GSVIVG01031185001 Vitis vinifera HOM05D003197 ORTHO05D003769 1.1e-19 99.4 50 92.0
arahy.Tifrunner.gnm1.ann1.5H6FCE Arachis hypogaea HOM05D003197 ORTHO05D003769 1.5e-19 99.0 50 92.0
arahy.Tifrunner.gnm1.ann1.BU45MS Arachis hypogaea HOM05D003197 ORTHO05D003769 1.5e-19 99.0 50 92.0
Sed0011546 Sechium edule HOM05D003197 ORTHO05D003769 1.5e-19 99.0 50 92.0
Atru.chr6.1651 Acer truncatum HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Aa31LG1G28820 Aethionema arabicum HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
AT2G47510 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
BcaB02g08764 Brassica carinata HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
BcaC02g12803 Brassica carinata HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
C04p00340 Brassica napus HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
C04p00370 Brassica napus HOM05D003197 ORTHO05D000780 1.9e-19 98.6 50 92.0
BolC4t21676H Brassica oleracea HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
BolC4t21682H Brassica oleracea HOM05D003197 ORTHO05D000780 1.9e-19 98.6 50 92.0
Carub.0004s3025 Capsella rubella HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
CARHR142910 Cardamine hirsuta HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Cfa005865 Carpinus fangiana HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
CiPaw.07G112700 Carya illinoinensis HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Ca_10314_v3 Cicer arietinum L. HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
ClCG10G011140 Citrullus lanatus HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Ciclev10019838m.g Citrus clementina HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Haze_04982 Corylus avellana HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
MELO3C017938.2 Cucumis melo HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Duzib138G1374 Durio zibethinus HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Migut.D00123 Erythranthe guttata HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Thhalv10001422m.g Eutrema salsugineum HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Gohir.D07G130500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Gorai.001G141300 Gossypium raimondii HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
HanXRQChr06g0167721 Helianthus annuus HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Lalb_Chr21g0309351 Lupinus albus HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 90.0
Manes.03G058700 Manihot esculenta HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Rhsim13G0008000 Rhododendron simsii HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Sp4g29450 Schrenkiella parvula HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
THA.LOC104802185 Tarenaya hassleriana HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
TPR.G33977 Trifolium pratense HOM05D003197 ORTHO05D003769 1.9e-19 98.6 50 92.0
Eucgr.H01081 Eucalyptus grandis HOM05D003197 ORTHO05D003769 2.5e-19 98.2 50 90.0
Glyma.02G015700 Glycine max HOM05D003197 ORTHO05D003769 2.5e-19 98.2 50 90.0
HanXRQChr04g0114721 Helianthus annuus HOM05D003197 ORTHO05D003769 2.5e-19 98.2 50 90.0
Nn3g21574 Nelumbo nucifera HOM05D003197 ORTHO05D003769 2.5e-19 98.2 50 90.0
Nn4g25715 Nelumbo nucifera HOM05D003197 ORTHO05D003769 2.5e-19 98.2 50 90.0
Phvul.007G217600 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 2.5e-19 98.2 50 90.0
TAR365G0397 Trochodendron aralioides HOM05D003197 ORTHO05D003769 2.5e-19 98.2 50 90.0
GSVIVG01028056001 Vitis vinifera HOM05D003197 ORTHO05D003769 2.5e-19 98.2 50 90.0
Psat6g163680 Pisum sativum HOM05D003197 ORTHO05D003769 3.3e-19 97.8 50 90.0
BcaB06g29441 Brassica carinata HOM05D003197 ORTHO05D003769 4.2e-19 97.4 50 90.0
A05p00410 Brassica napus HOM05D003197 ORTHO05D003769 4.2e-19 97.4 50 90.0
COL.COLO4_23299 Corchorus olitorius HOM05D003197 ORTHO05D003769 4.2e-19 97.4 50 90.0
CsaV3_4G001010 Cucumis sativus L. HOM05D003197 ORTHO05D003769 4.2e-19 97.4 50 90.0
ECA236G1793 Erigeron canadensis HOM05D003197 ORTHO05D003769 4.2e-19 97.4 50 90.0
Gohir.A07G126400 Gossypium hirsutum HOM05D003197 ORTHO05D003769 4.2e-19 97.4 50 90.0
Thecc.01G306500 Theobroma cacao HOM05D003197 ORTHO05D003769 4.2e-19 97.4 50 90.0
TAR636G2764 Trochodendron aralioides HOM05D003197 ORTHO05D003769 4.2e-19 97.4 50 90.0
AL4G47080 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 5.5e-19 97.1 50 90.0
EL10Ac6g15230 Beta vulgaris HOM05D003197 ORTHO05D003769 5.5e-19 97.1 50 90.0
Carub.0008s1096 Capsella rubella HOM05D003197 ORTHO05D003769 5.5e-19 97.1 50 90.0
Cpa.g.sc151.34 Carica papaya HOM05D003197 ORTHO05D003769 5.5e-19 97.1 50 90.0
MD00G1140200 Malus domestica HOM05D003197 ORTHO05D003769 5.5e-19 97.1 50 88.0
PGR119G1313 Punica granatum HOM05D003197 ORTHO05D003769 5.5e-19 97.1 50 88.0
ATR0796G113 Amborella trichopoda HOM05D003197 ORTHO05D003769 7.2e-19 96.7 50 88.0
Cpa.g.sc27.118 Carica papaya HOM05D003197 ORTHO05D003769 7.2e-19 96.7 50 90.0
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 7.2e-19 96.7 50 90.0
Glyma.02G015800 Glycine max HOM05D003197 ORTHO05D003769 7.2e-19 96.7 50 88.0
Gohir.A08G041500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 7.2e-19 96.7 50 92.0
Gohir.D08G051600 Gossypium hirsutum HOM05D003197 ORTHO05D003769 7.2e-19 96.7 50 92.0
Lj5g0001576 Lotus japonicus HOM05D003197 ORTHO05D003769 7.2e-19 96.7 50 90.0
Manes.05G000300 Manihot esculenta HOM05D003197 ORTHO05D003769 7.2e-19 96.7 50 90.0
Duzib211G0223 Durio zibethinus HOM05D003197 ORTHO05D003769 9.5e-19 96.3 50 90.0
Prupe.8G265300 Prunus persica HOM05D003197 ORTHO05D003769 9.5e-19 96.3 50 90.0
Sabra02G0157600 Salix brachista HOM05D003197 ORTHO05D003769 9.5e-19 96.3 50 90.0
Hund12826 Selenicereus undatus HOM05D003197 ORTHO05D003769 9.5e-19 96.3 50 90.0
CARHR257280 Cardamine hirsuta HOM05D003197 ORTHO05D003769 1.6e-18 95.5 50 88.0
AUR62008718 Chenopodium quinoa HOM05D003197 ORTHO05D003769 1.6e-18 95.5 50 88.0
AUR62025515 Chenopodium quinoa HOM05D003197 ORTHO05D003769 1.6e-18 95.5 50 88.0
Eucgr.H01083 Eucalyptus grandis HOM05D003197 ORTHO05D003769 1.6e-18 95.5 50 88.0
Gorai.004G051500 Gossypium raimondii HOM05D003197 ORTHO05D003769 1.6e-18 95.5 50 90.0
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.6e-18 95.5 50 86.0
unitig_22.g5232 Utricularia gibba HOM05D003197 ORTHO05D003769 1.6e-18 95.5 50 88.0
VMungo0720G1283 Vigna mungo HOM05D003197 ORTHO05D003769 1.6e-18 95.5 50 86.0
AL8G25140 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 2.1e-18 95.1 50 88.0
AT5G50950 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 2.1e-18 95.1 50 88.0
Cc01_g21120 Coffea canephora HOM05D003197 ORTHO05D003769 2.1e-18 95.1 50 90.0
HanXRQChr06g0177421 Helianthus annuus HOM05D003197 ORTHO05D003769 2.1e-18 95.1 50 88.0
Nitab4.5_0009662g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 2.1e-18 95.1 50 90.0
QL12p027709 Quercus lobata HOM05D003197 ORTHO05D003769 2.1e-18 95.1 50 88.0
SalBow6G6079 Salvia bowleyana HOM05D003197 ORTHO05D003769 2.1e-18 95.1 50 90.0
VMungo0720G0285 Vigna mungo HOM05D003197 ORTHO05D003769 2.1e-18 95.1 50 86.0
BolC4t28767H Brassica oleracea HOM05D003197 ORTHO05D003769 2.8e-18 94.7 50 88.0
CDE12G0403 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 2.8e-18 94.7 50 86.0
Os03g0337900 Oryza sativa ssp. japonica HOM05D003197 ORTHO05D003769 2.8e-18 94.7 50 86.0
Potri.002G201300 Populus trichocarpa HOM05D003197 ORTHO05D003769 2.8e-18 94.7 50 88.0
Ah.08g213570 Amaranthus hybridus HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 88.0
CAN.G862.60 Capsicum annuum HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 88.0
CBR_g26174 Chara braunii HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 86.0
FvH4_2g26140 Fragaria vesca HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 90.0
FAN24G1606 Fragaria x ananassa HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 90.0
MD03G1292300 Malus domestica HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 86.0
Peaxi162Scf00362g01196 Petunia axillaris HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 88.0
RcHm_v2.0_Chr6g0294521 Rosa chinensis HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 90.0
Sc05g0003520 Simmondsia chinensis HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 88.0
Solyc09g075450.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 88.0
Sopen09g030240 Solanum pennellii HOM05D003197 ORTHO05D003769 3.6e-18 94.4 50 88.0
Glyma.10G016200 Glycine max HOM05D003197 ORTHO05D003769 4.7e-18 94.0 50 86.0
Phvul.007G217700 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 4.7e-18 94.0 50 84.0
Carub.0008s1097 Capsella rubella HOM05D003197 ORTHO05D003769 8.0e-18 93.2 50 84.0
FvH4_2g26121 Fragaria vesca HOM05D003197 ORTHO05D003769 8.0e-18 93.2 50 88.0
Hma1.2p1_0494F.1_g165490 Hydrangea macrophylla HOM05D003197 ORTHO05D003769 8.0e-18 93.2 50 88.0
Medtr1g087900 Medicago truncatula HOM05D003197 ORTHO05D003769 8.0e-18 93.2 50 86.0
Nitab4.5_0007413g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 8.0e-18 93.2 50 88.0
Atru.chr5.1084 Acer truncatum HOM05D003197 ORTHO05D003769 1.0e-17 92.8 50 86.0
Aqoxy2G02869 Aquilegia oxysepala HOM05D003197 ORTHO05D003769 1.0e-17 92.8 50 84.0
BcaC02g06979 Brassica carinata HOM05D003197 ORTHO05D003769 1.0e-17 92.8 50 86.0
C04p72860 Brassica napus HOM05D003197 ORTHO05D003769 1.0e-17 92.8 50 86.0
HPP92_013736 Vanilla planifolia HOM05D003197 ORTHO05D003769 1.0e-17 92.8 50 84.0
PSO731G0008 Papaver somniferum HOM05D003197 ORTHO05D003769 1.4e-17 92.4 50 82.0
PSO764G0236 Papaver somniferum HOM05D003197 ORTHO05D003769 1.4e-17 92.4 50 82.0
Zm00001eb016240 Zea mays HOM05D003197 ORTHO05D003769 1.4e-17 92.4 50 82.0
RcHm_v2.0_Chr6g0294511 Rosa chinensis HOM05D003197 ORTHO05D003769 1.8e-17 92.0 50 86.0
CiPaw.08G092800 Carya illinoinensis HOM05D003197 ORTHO05D003769 3.0e-17 91.3 50 86.0
CDE01G0127 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 4.0e-17 90.9 48 85.4
DCAR_006747 Daucus carota HOM05D003197 ORTHO05D003769 4.0e-17 90.9 52 80.8
Peaxi162Scf00001g00341 Petunia axillaris HOM05D003197 ORTHO05D003769 5.2e-17 90.5 48 87.5
Zm00001eb308640 Zea mays HOM05D003295 ORTHO05D003769 1.2e-16 89.4 52 75.0
Mapoly0045s0064 Marchantia polymorpha HOM05D003197 ORTHO05D003769 1.5e-16 89.0 50 82.0
Lj2g0021265 Lotus japonicus HOM05D003197 ORTHO05D003769 9.8e-16 86.3 50 82.0
BNapus_Darmor_BZH_scaffold_122p00230 Brassica napus HOM05D003197 ORTHO05D003769 1.3e-15 85.9 50 84.0
SHI31149 Sapria himalayana HOM05D003197 ORTHO05D003769 1.3e-15 85.9 52 76.9
Zm00001eb165980 Zea mays HOM05D003197 ORTHO05D003769 1.3e-15 85.9 48 79.2
AagrBONN_evm.TU.Sc2ySwM_228.3677 Anthoceros agrestis HOM05D003197 ORTHO05D003769 2.2e-15 85.1 51 80.4
Pp3c23_19500 Physcomitrium patens HOM05D003197 ORTHO05D003769 6.3e-15 83.6 50 76.0
Cfa027230 Carpinus fangiana HOM05D003197 ORTHO05D003769 1.8e-14 82.0 50 78.0
Pp3c20_7140 Physcomitrium patens HOM05D003197 ORTHO05D003769 1.8e-14 82.0 50 74.0
AagrBONN_evm.TU.Sc2ySwM_344.987 Anthoceros agrestis HOM05D003197 ORTHO05D003769 2.4e-14 81.6 50 78.0
PRCOL_00002149 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 7.0e-14 80.1 49 71.4
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 7.8e-13 76.6 50 70.0
Cre01.g020223 Chlamydomonas reinhardtii HOM05D003197 ORTHO05D003769 3.9e-12 74.3 51 68.6
MD01G1075600 Malus domestica HOM05D003197 ORTHO05D003769 8.6e-12 73.2 35 91.4
PRCOL_00000918 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 2.3e-09 65.1 44 68.2
Haze_27310 Corylus avellana HOM05D003197 ORTHO05D003769 3.1e-09 64.7 44 65.9
MCO15G383 Micromonas commoda HOM05D003197 ORTHO05D003769 3.1e-09 64.7 44 68.2
Nitab4.5_0000116g0300 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.2e-08 62.8 35 85.7
BNapus_Darmor_BZH_scaffold_99p00260 Brassica napus HOM05D003197 ORTHO05D003769 1.5e-08 62.4 33 87.9
Nitab4.5_0000803g0020 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.3e-07 59.3 35 82.9
FAN27G3019 Fragaria x ananassa HOM05D003197 ORTHO05D003769 1.9e-06 55.5 35 82.9
Oeu017666.1 Olea europaea HOM05D003197 ORTHO05D003769 1.9e-06 55.5 31 83.9


User provided reference genes

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