Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033836 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D018840 1.7e-90 335.9 156 100.0
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 1.2e-85 319.7 155 95.5
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 1.2e-77 293.1 161 86.3
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 4.0e-76 288.1 155 86.5
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 8.9e-76 287.0 155 85.2
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 1.2e-75 286.6 155 85.2
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 2.6e-75 285.4 155 84.5
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.6e-75 285.4 155 85.2
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 7.6e-75 283.9 155 84.5
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 7.6e-75 283.9 155 84.5
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 9.9e-75 283.5 155 85.2
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 1.3e-74 283.1 155 84.5
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 2.2e-74 282.3 155 85.2
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 2.2e-74 282.3 155 85.2
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 3.8e-74 281.6 155 83.2
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 3.8e-74 281.6 155 84.5
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 8.4e-74 280.4 155 83.2
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 8.4e-74 280.4 155 83.9
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 1.1e-73 280.0 155 83.2
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 1.1e-73 280.0 155 83.2
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 1.1e-73 280.0 155 82.6
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 1.4e-73 279.6 155 82.6
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 1.9e-73 279.3 155 83.2
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 1.9e-73 279.3 155 83.9
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 2.4e-73 278.9 155 83.2
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 3.2e-73 278.5 155 83.2
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 4.1e-73 278.1 155 83.2
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 4.1e-73 278.1 155 83.9
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 4.1e-73 278.1 155 82.6
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 7.1e-73 277.3 155 83.9
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 7.1e-73 277.3 155 82.6
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 9.2e-73 276.9 155 81.9
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 9.2e-73 276.9 155 81.9
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 1.2e-72 276.6 155 81.9
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 1.6e-72 276.2 155 83.2
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 1.6e-72 276.2 155 81.3
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 2.1e-72 275.8 155 81.9
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 2.7e-72 275.4 155 82.6
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 3.5e-72 275.0 155 80.6
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 4.6e-72 274.6 155 81.3
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 4.6e-72 274.6 155 81.3
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 6.0e-72 274.2 155 81.9
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 6.0e-72 274.2 155 82.6
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 7.8e-72 273.9 155 80.6
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 7.8e-72 273.9 155 80.6
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 7.8e-72 273.9 155 81.9
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 1.0e-71 273.5 155 81.3
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 1.0e-71 273.5 155 82.6
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 1.3e-71 273.1 155 80.0
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 1.7e-71 272.7 155 80.6
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 1.7e-71 272.7 155 80.6
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 1.7e-71 272.7 155 81.9
GSVIVG01020335001 Vitis vinifera HOM05D004132 ORTHO05D006273 1.7e-71 272.7 155 81.3
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 2.3e-71 272.3 155 80.6
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 2.3e-71 272.3 155 80.6
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 2.3e-71 272.3 155 81.3
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 3.0e-71 271.9 155 81.9
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 3.0e-71 271.9 155 81.3
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 3.0e-71 271.9 155 81.3
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 3.9e-71 271.6 155 80.0
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 3.9e-71 271.6 155 81.9
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 5.1e-71 271.2 155 81.3
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 5.1e-71 271.2 154 81.2
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 5.1e-71 271.2 155 82.6
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 6.6e-71 270.8 155 80.0
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 8.7e-71 270.4 155 81.3
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 1.1e-70 270.0 155 81.3
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 1.1e-70 270.0 155 80.0
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.5e-70 269.6 155 80.6
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.5e-70 269.6 155 80.6
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 1.5e-70 269.6 154 82.5
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 1.9e-70 269.2 155 81.3
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 1.9e-70 269.2 155 80.6
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 1.9e-70 269.2 155 81.9
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 1.9e-70 269.2 155 80.6
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 1.9e-70 269.2 153 81.0
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 1.9e-70 269.2 155 80.6
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 2.5e-70 268.9 155 78.7
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 3.3e-70 268.5 155 80.6
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 3.3e-70 268.5 155 79.4
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 3.3e-70 268.5 155 81.9
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 3.3e-70 268.5 155 78.7
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 3.3e-70 268.5 155 79.4
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 4.3e-70 268.1 155 81.3
Oeu056055.1 Olea europaea HOM05D004132 ORTHO05D006273 4.3e-70 268.1 155 81.3
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 5.6e-70 267.7 155 79.4
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 7.3e-70 267.3 155 80.6
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 7.3e-70 267.3 155 81.3
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 7.3e-70 267.3 155 80.6
GSVIVG01020347001 Vitis vinifera HOM05D004132 ORTHO05D006273 7.3e-70 267.3 153 81.0
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 1.2e-69 266.5 155 80.0
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 2.1e-69 265.8 155 80.0
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 2.8e-69 265.4 155 79.4
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 3.6e-69 265.0 155 80.0
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 4.7e-69 264.6 155 79.4
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 1.8e-68 262.7 155 76.1
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 1.8e-68 262.7 155 76.8
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 2.4e-68 262.3 155 76.1
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 3.1e-68 261.9 155 78.7
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 3.1e-68 261.9 155 78.7
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 4.0e-68 261.5 155 78.1
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 6.9e-68 260.8 155 78.7
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 1.2e-67 260.0 155 78.1
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 1.2e-67 260.0 155 78.1
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 2.0e-67 259.2 155 77.4
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 2.6e-67 258.8 155 77.4
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 2.6e-67 258.8 155 77.4
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 2.6e-67 258.8 155 77.4
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 2.6e-67 258.8 155 78.1
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 3.4e-67 258.5 155 78.1
SEGI_05248 Sequoiadendron giganteum HOM05D004132 ORTHO05D006273 3.4e-67 258.5 155 76.8
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 7.6e-67 257.3 155 77.4
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 7.6e-67 257.3 155 76.8
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 7.6e-67 257.3 155 77.4
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 1.7e-66 256.1 146 80.1
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 1.4e-65 253.1 156 75.6
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 1.3e-63 246.5 146 78.8
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 1.7e-63 246.1 155 72.3
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 3.9e-63 245.0 154 74.0
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 3.6e-61 238.4 155 69.7
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 1.4e-60 236.5 155 70.3
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 2.6e-59 232.3 156 68.6
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 9.3e-57 223.8 121 86.8
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 1.6e-56 223.0 155 68.4
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 2.1e-53 212.6 155 65.2
Lj1g0015918 Lotus japonicus HOM05D004132 ORTHO05D006273 4.8e-53 211.5 118 81.4
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 1.1e-52 210.3 153 64.1
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 1.1e-52 210.3 155 63.9
FAN21G3660 Fragaria x ananassa HOM05D004132 ORTHO05D035098 5.3e-52 208.0 114 85.1
Rhsim01G0214100 Rhododendron simsii HOM05D004132 ORTHO05D018840 4.9e-50 201.4 111 82.0
GSVIVG01020319001 Vitis vinifera HOM05D004132 ORTHO05D035098 1.1e-49 200.3 112 83.0
Rhsim08G0147200 Rhododendron simsii HOM05D004132 ORTHO05D018840 2.7e-48 195.7 116 77.6
QL04p095492 Quercus lobata HOM05D004132 ORTHO05D018840 1.8e-47 193.0 123 73.2
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 3.3e-46 188.7 117 76.1
Hma1.2p1_0634F.1_g192870 Hydrangea macrophylla HOM05D004132 ORTHO05D018840 2.8e-45 185.7 108 78.7
Oeu050047.1 Olea europaea HOM05D004132 ORTHO05D018840 8.2e-45 184.1 113 76.1
Sed0008608 Sechium edule HOM05D004132 ORTHO05D006273 1.1e-44 183.7 106 77.4
Rhsim02G0198900 Rhododendron simsii HOM05D004132 ORTHO05D018840 8.8e-31 137.5 116 62.1
ECA233G2583 Erigeron canadensis HOM05D004132 ORTHO05D006273 1.3e-29 133.7 111 59.5
Rhsim06G0102600 Rhododendron simsii HOM05D004132 ORTHO05D018840 5.5e-25 118.2 93 64.5
Haze_26151 Corylus avellana HOM05D004132 ORTHO05D006273 1.3e-21 107.1 183 34.4
Dinv25394 Davidia involucrata HOM05D004132 ORTHO05D006273 1.7e-21 106.7 56 83.9
Cfa022583 Carpinus fangiana HOM05D004132 ORTHO05D006273 1.8e-20 103.2 150 37.3
Hma1.2p1_0666F.1_g199485 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 1.1e-12 77.4 43 76.7
TAR627G1059 Trochodendron aralioides HOM05D004132 ORTHO05D006273 7.0e-12 74.7 43 76.7
HanXRQChr09g0260411 Helianthus annuus HOM05D004132 ORTHO05D006273 2.0e-11 73.2 40 75.0
BolC6t37679H Brassica oleracea HOM05D004132 ORTHO05D006273 6.5e-10 68.2 103 39.8
GSVIVG01012128001 Vitis vinifera HOM05D004132 ORTHO05D006273 8.5e-10 67.8 104 44.2
Duzib212G0380 Durio zibethinus HOM05D004132 ORTHO05D035098 4.4e-06 55.5 79 44.3


User provided reference genes

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