Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.0e-208 728.4 399 100.0
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.9e-168 595.1 411 81.5
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 4.3e-167 591.7 411 81.0
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.6e-161 571.6 411 78.8
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 8.8e-160 567.4 411 78.3
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 9.1e-157 557.4 409 77.8
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 3.2e-146 522.3 411 73.7
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 5.7e-143 511.5 411 71.8
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.0e-139 500.7 411 70.6
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.3e-139 500.4 409 71.4
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.7e-135 485.0 412 70.9
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 3.7e-134 482.3 411 70.3
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 5.4e-133 478.4 416 69.0
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 3.5e-132 475.7 417 68.8
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 8.5e-131 471.1 412 69.4
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 1.9e-130 469.9 412 68.9
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.2e-130 469.2 412 67.7
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 3.2e-130 469.2 410 69.0
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 5.5e-130 468.4 412 67.7
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.2e-129 467.2 422 69.2
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.1e-129 464.9 412 67.7
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.0e-128 464.2 410 68.8
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 2.6e-127 459.5 420 65.2
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.7e-127 458.4 412 68.0
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 7.5e-127 458.0 412 66.7
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 9.8e-127 457.6 414 68.8
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 9.8e-127 457.6 412 67.5
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 2.8e-126 456.1 411 68.4
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 6.3e-126 454.9 412 67.2
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.4e-125 453.8 412 67.7
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.4e-125 453.8 415 66.3
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 2.4e-125 453.0 412 68.4
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 7.0e-125 451.4 407 68.3
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.2e-124 450.7 407 67.6
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.2e-124 450.7 406 66.7
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.2e-124 450.7 412 67.0
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 2.0e-124 449.9 411 68.1
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.5e-124 449.1 406 66.5
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.5e-124 448.7 369 70.5
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.3e-123 447.2 410 65.9
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.3e-123 447.2 407 67.6
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 1.7e-123 446.8 410 65.1
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 8.6e-123 444.5 404 66.6
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.1e-122 444.1 414 65.0
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.1e-122 444.1 414 65.2
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-122 444.1 406 66.3
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.5e-122 443.7 408 68.4
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 1.9e-122 443.4 396 66.7
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 2.5e-122 443.0 407 66.3
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 7.2e-122 441.4 408 68.1
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 9.5e-122 441.0 408 68.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 9.5e-122 441.0 409 68.0
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.1e-121 439.9 414 65.5
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 4.7e-121 438.7 408 67.6
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 6.1e-121 438.3 414 66.4
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 6.1e-121 438.3 413 64.9
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 8.0e-121 438.0 414 63.3
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 2.3e-120 436.4 412 65.8
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 2.3e-120 436.4 420 66.4
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 3.4e-119 432.6 426 65.3
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 5.7e-119 431.8 410 63.2
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 9.8e-119 431.0 412 65.0
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 8.3e-118 427.9 403 67.0
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 4.1e-117 425.6 409 62.8
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 7.0e-117 424.9 411 63.0
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 7.0e-117 424.9 418 63.2
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 1.6e-116 423.7 419 62.1
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 3.5e-116 422.5 412 63.6
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 5.9e-116 421.8 420 61.9
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 5.9e-116 421.8 432 61.6
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 7.8e-116 421.4 417 62.8
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.0e-115 421.0 400 67.2
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.3e-115 419.9 407 62.4
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 2.9e-115 419.5 402 64.7
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 3.9e-115 419.1 432 62.7
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 4.3e-114 415.6 410 63.4
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 9.5e-114 414.5 403 65.8
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 9.5e-114 414.5 354 68.4
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 9.5e-114 414.5 413 62.7
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 2.8e-113 412.9 403 64.8
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.3e-112 409.8 342 71.6
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 2.3e-112 409.8 354 68.4
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.2e-111 407.5 354 68.1
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 1.3e-110 404.1 331 69.5
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 8.3e-110 401.4 383 65.8
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 4.1e-109 399.1 410 61.0
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.7e-107 393.7 408 61.3
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.3e-107 393.3 438 57.3
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 2.3e-107 393.3 335 69.9
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 1.1e-106 391.0 418 59.8
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-106 390.6 406 59.1
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 2.5e-106 389.8 418 59.8
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.3e-106 388.3 419 59.4
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.2e-105 387.5 432 59.0
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.2e-105 387.5 262 76.7
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.1e-105 386.7 418 59.3
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.2e-105 385.2 418 59.3
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.8e-104 383.6 432 56.7
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 3.1e-104 382.9 363 61.7
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.3e-102 377.5 425 57.2
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-102 377.5 364 63.7
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.7e-102 377.1 421 59.9
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 2.2e-102 376.7 300 74.7
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 4.9e-102 375.6 340 63.8
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.4e-101 373.2 430 55.6
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 7.1e-101 371.7 420 57.1
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 3.5e-100 369.4 437 55.1
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-99 367.5 411 57.9
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.7e-99 367.1 432 56.2
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 2.3e-99 366.7 434 57.6
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 5.1e-99 365.5 432 55.8
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 5.1e-99 365.5 432 55.8
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.5e-98 364.0 346 67.1
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 7.3e-98 361.7 429 55.9
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.5e-98 361.3 405 58.0
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 1.1e-96 357.8 436 53.7
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 2.2e-94 350.1 406 55.2
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 5.4e-93 345.5 338 62.4
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 4.6e-92 342.4 407 54.5
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 3.6e-89 332.8 349 61.3
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 5.8e-87 325.5 378 52.9
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.8e-86 322.8 228 82.0
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 8.4e-86 321.6 442 53.6
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 1.8e-80 303.9 345 59.4
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.2e-79 301.2 242 71.1
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 1.0e-75 288.1 347 53.3
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.1e-73 280.4 387 51.4
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 8.1e-73 278.5 386 51.3
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.8e-72 277.3 417 47.0
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 3.2e-69 266.5 417 45.8
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.9e-68 261.9 400 49.0
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.4e-61 241.1 309 51.5
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.5e-58 231.1 414 41.3
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.5e-50 204.5 208 61.1
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.2e-47 194.9 280 48.6
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 5.0e-46 189.5 267 49.1
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 5.0e-46 189.5 267 49.1
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.4e-45 188.0 337 44.8
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 7.2e-45 185.7 210 56.2
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 4.6e-44 183.0 285 41.4
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 5.1e-43 179.5 237 48.5
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.4e-42 175.6 171 56.1
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.0e-38 165.2 225 48.9
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.3e-38 164.9 338 39.9
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 2.3e-35 154.1 380 37.4
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 3.0e-35 153.7 271 39.1
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 1.5e-34 151.4 102 75.5
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 2.7e-28 130.6 210 41.9
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 2.3e-27 127.5 109 66.1
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.4e-24 117.5 249 32.1
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 2.7e-23 114.0 151 53.6
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 5.7e-18 96.3 123 57.7
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 4.8e-17 93.2 70 72.9
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 3.8e-14 83.6 220 28.2
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 3.1e-08 63.9 123 35.8
Nitab4.5_0006780g0020 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.6e-06 56.2 42 71.4


User provided reference genes

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