Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 5.8e-71 270.8 136 100.0
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.4e-53 213.0 143 77.6
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.9e-53 212.6 133 78.2
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 4.2e-53 211.5 143 76.9
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 5.4e-53 211.1 143 76.9
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 9.3e-53 210.3 143 75.5
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.6e-52 209.5 143 75.5
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.1e-52 209.1 143 74.8
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 2.7e-52 208.8 141 76.6
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 6.0e-52 207.6 141 75.9
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 7.8e-52 207.2 141 75.9
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 7.8e-52 207.2 141 75.2
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.0e-51 206.8 141 75.9
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.3e-51 206.5 141 75.2
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-51 206.1 141 73.8
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.3e-51 205.7 141 74.5
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 3.0e-51 205.3 141 75.2
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 3.0e-51 205.3 143 73.4
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 3.0e-51 205.3 141 73.8
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 3.0e-51 205.3 141 74.5
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.0e-51 205.3 141 74.5
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.0e-51 205.3 141 74.5
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.0e-51 205.3 141 74.5
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 3.0e-51 205.3 141 74.5
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 3.0e-51 205.3 141 75.2
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 3.0e-51 205.3 141 73.8
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.0e-51 205.3 141 73.8
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 3.9e-51 204.9 141 74.5
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.1e-51 204.5 141 74.5
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.1e-51 204.5 141 74.5
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 5.1e-51 204.5 141 74.5
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 5.1e-51 204.5 141 75.2
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 5.1e-51 204.5 144 77.8
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 6.6e-51 204.1 141 73.0
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 6.6e-51 204.1 141 74.5
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 8.7e-51 203.8 141 73.8
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 8.7e-51 203.8 141 75.2
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 1.1e-50 203.4 141 74.5
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.5e-50 203.0 141 75.2
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.5e-50 203.0 141 74.5
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.5e-50 202.2 141 73.0
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.5e-50 202.2 141 73.0
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 3.3e-50 201.8 141 74.5
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 4.3e-50 201.4 141 74.5
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 5.6e-50 201.1 141 71.6
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 5.6e-50 201.1 141 73.8
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.3e-50 200.7 153 69.3
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 7.3e-50 200.7 153 68.0
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 7.3e-50 200.7 141 73.8
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.3e-49 199.9 141 73.0
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.3e-49 199.9 141 73.0
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.3e-49 199.9 141 73.0
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.3e-49 199.9 141 73.0
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.6e-49 199.5 141 70.9
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.6e-49 199.5 149 69.1
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-49 199.5 153 68.6
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-49 199.5 153 68.6
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.6e-49 199.5 141 72.3
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.6e-49 199.5 141 72.3
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.1e-49 199.1 141 71.6
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 4.8e-49 198.0 141 72.3
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.8e-49 198.0 141 74.5
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 4.8e-49 198.0 141 71.6
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 8.1e-49 197.2 192 58.3
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 1.1e-48 196.8 141 70.9
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.4e-48 196.4 141 72.3
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.4e-48 195.7 141 70.9
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 3.1e-48 195.3 141 71.6
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 3.1e-48 195.3 141 71.6
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 4.0e-48 194.9 141 70.9
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 5.3e-48 194.5 141 71.6
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 6.9e-48 194.1 141 70.2
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 6.9e-48 194.1 141 70.2
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.5e-47 193.0 189 57.7
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 2.0e-47 192.6 141 69.5
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.6e-47 192.2 141 70.2
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.6e-47 192.2 141 70.9
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 3.4e-47 191.8 141 70.9
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 3.4e-47 191.8 141 71.6
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 3.4e-47 191.8 141 68.1
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 4.5e-47 191.4 141 68.8
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.5e-47 191.4 141 70.2
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 5.8e-47 191.0 141 68.8
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 7.6e-47 190.7 141 68.8
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 7.6e-47 190.7 141 69.5
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 7.6e-47 190.7 141 68.8
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.3e-46 189.9 159 62.9
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.3e-46 189.9 141 68.8
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.7e-46 189.5 141 68.1
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.9e-46 188.7 141 68.1
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 3.8e-46 188.3 141 67.4
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 8.4e-46 187.2 141 67.4
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 8.4e-46 187.2 141 68.1
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.1e-45 186.8 143 69.9
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.4e-45 186.4 141 66.7
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.9e-45 186.0 141 69.5
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.4e-45 185.7 126 79.4
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 2.4e-45 185.7 141 69.5
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.2e-45 185.3 141 67.4
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.2e-45 184.9 144 70.8
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.2e-45 184.9 144 70.8
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 5.4e-45 184.5 141 66.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 7.1e-45 184.1 169 59.2
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 9.3e-45 183.7 141 66.0
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.6e-44 183.0 141 66.7
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 2.1e-44 182.6 141 68.8
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.1e-44 182.6 141 64.5
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 3.5e-44 181.8 141 68.8
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 6.0e-44 181.0 141 68.8
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 7.9e-44 180.6 128 71.1
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.0e-43 180.3 130 69.2
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.0e-43 180.3 130 70.0
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 2.3e-43 179.1 147 67.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.0e-43 178.7 141 65.2
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 6.7e-43 177.6 143 65.7
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.5e-42 176.4 128 72.7
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.9e-42 176.0 141 66.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.5e-42 175.6 141 63.1
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 2.5e-42 175.6 143 67.1
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 3.3e-42 175.3 141 61.7
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.1e-41 172.6 141 63.8
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 8.1e-41 170.6 130 68.5
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 5.3e-40 167.9 133 66.2
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 9.9e-39 163.7 133 65.4
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 6.4e-38 161.0 125 69.6
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.1e-36 156.0 141 63.1
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 4.6e-36 154.8 97 82.5
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 6.0e-36 154.5 133 61.7
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 7.9e-36 154.1 100 81.0
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.3e-35 153.3 103 76.7
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.8e-35 152.9 127 65.4
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 6.7e-35 151.0 97 78.4
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 8.7e-35 150.6 97 77.3
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 8.7e-35 150.6 97 77.3
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-34 149.4 95 78.9
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-34 149.4 97 76.3
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.3e-34 148.3 99 77.8
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 5.6e-34 147.9 97 76.3
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.3e-33 146.7 143 58.0
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 2.1e-33 146.0 171 46.8
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 4.8e-33 144.8 131 60.3
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 2.4e-32 142.5 98 74.5
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.0e-31 139.4 101 71.3
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.2e-28 130.2 110 61.8
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 4.3e-26 121.7 67 91.0
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.2e-25 119.4 94 63.8
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.8e-25 118.2 83 73.5
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 4.8e-25 118.2 97 62.9
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.5e-21 104.8 61 86.9
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.1e-20 102.8 75 69.3
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-18 96.7 67 68.7
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-18 96.7 67 68.7
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.9e-18 96.3 80 63.8
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 7.4e-18 94.4 96 54.2
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.7e-17 93.2 67 67.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.2e-17 92.8 62 71.0
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.0e-11 73.9 54 66.7
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.6e-10 69.3 68 51.5
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 5.7e-10 68.2 67 49.3
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 1.3e-09 67.0 92 42.4
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 8.2e-09 64.3 37 83.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 8.2e-09 64.3 37 83.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 3.1e-08 62.4 102 45.1
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 4.1e-08 62.0 149 32.9
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.4e-07 58.9 38 68.4


User provided reference genes

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