Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.1e-46 189.5 88 100.0
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 9.0e-25 116.7 75 70.7
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 1.5e-24 115.9 75 72.0
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 1.5e-24 115.9 75 72.0
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 1.5e-24 115.9 75 72.0
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.5e-24 115.9 75 70.7
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 2.6e-24 115.2 77 68.8
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 2.6e-24 115.2 78 67.9
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 3.4e-24 114.8 75 70.7
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 69.3
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 69.3
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 69.3
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 69.3
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 69.3
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 69.3
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 69.3
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 70.7
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 70.7
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 70.7
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 70.7
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 70.7
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 70.7
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 4.5e-24 114.4 75 70.7
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 7.6e-24 113.6 73 71.2
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 7.6e-24 113.6 75 69.3
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 7.6e-24 113.6 75 69.3
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 1.3e-23 112.8 82 64.6
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.7e-23 112.5 75 68.0
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 1.7e-23 112.5 60 83.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.7e-23 112.5 60 85.0
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.7e-23 112.5 73 72.6
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.7e-23 112.5 60 85.0
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.7e-23 112.5 60 85.0
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 1.7e-23 112.5 75 69.3
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 2.9e-23 111.7 75 69.3
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 3.8e-23 111.3 75 69.3
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 3.8e-23 111.3 75 69.3
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.8e-23 111.3 73 71.2
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.8e-23 111.3 73 71.2
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.8e-23 111.3 73 71.2
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.8e-23 111.3 60 83.3
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 6.5e-23 110.5 73 71.2
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 6.5e-23 110.5 73 71.2
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 8.4e-23 110.2 60 85.0
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 8.4e-23 110.2 78 65.4
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 1.1e-22 109.8 73 69.9
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 1.1e-22 109.8 73 69.9
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.4e-22 109.4 73 71.2
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.2e-22 107.8 78 64.1
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 5.5e-22 107.5 75 68.0
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.5e-22 107.5 60 80.0
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 5.5e-22 107.5 60 85.0
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 5.5e-22 107.5 60 85.0
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 7.1e-22 107.1 73 69.9
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 9.3e-22 106.7 65 76.9
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.1e-21 105.5 60 81.7
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.1e-21 105.5 60 81.7
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.1e-21 105.5 54 87.0
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.1e-21 105.5 54 87.0
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.1e-21 105.5 54 87.0
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.7e-21 105.1 58 82.8
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.5e-21 104.8 60 81.7
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 6.1e-21 104.0 67 71.6
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.8e-20 102.4 73 65.8
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.3e-20 102.1 60 78.3
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 3.9e-20 101.3 58 81.0
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-19 99.8 75 62.7
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-19 99.8 75 62.7
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-19 99.8 75 62.7
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-19 99.8 75 62.7
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 1.1e-19 99.8 60 78.3
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.5e-19 99.4 66 66.7
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.5e-19 99.4 73 63.0
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.5e-19 99.4 73 67.1
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 1.9e-19 99.0 73 64.4
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 2.5e-19 98.6 61 75.4
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 4.3e-19 97.8 69 60.9
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 9.7e-19 96.7 65 67.7
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.2e-18 95.5 63 69.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.2e-18 95.5 75 60.0
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.8e-18 95.1 75 61.3
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 4.8e-18 94.4 67 65.7
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 8.2e-18 93.6 65 66.2
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 3.1e-17 91.7 66 65.2
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 5.3e-17 90.9 53 77.4
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 9.0e-17 90.1 67 62.7
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 1.0e-15 86.7 58 74.1
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 1.0e-15 86.7 49 79.6
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 2.2e-15 85.5 80 55.0
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 5.0e-15 84.3 49 77.6
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 6.5e-15 84.0 48 79.2
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 8.5e-15 83.6 80 53.8
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 1.4e-14 82.8 73 56.2
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.9e-14 82.4 61 60.7
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 1.9e-14 82.4 40 92.5
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 4.2e-14 81.3 40 90.0
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 5.5e-14 80.9 75 54.7
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 2.1e-13 79.0 53 69.8
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 1.0e-12 76.6 57 61.4
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.8e-12 75.9 43 74.4
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-12 75.9 56 62.5
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.0e-11 72.4 37 83.8
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.3e-11 71.6 42 73.8
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.7e-10 69.3 37 86.5
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 6.9e-09 63.9 53 58.5
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 9.1e-09 63.5 37 75.7
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 9.1e-09 63.5 50 60.0
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 2.6e-08 62.0 48 60.4
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.4e-08 61.6 47 59.6
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 4.5e-08 61.2 37 73.0
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-07 59.7 47 59.6


User provided reference genes

Program Settings