Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033661 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.9e-81 305.8 161 100.0
CSS0017244 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 1.2e-75 286.6 161 95.7
Actinidia19346 Actinidia chinensis HOM05D003444 ORTHO05D003963 7.8e-59 230.7 159 82.4
Cc04_g12590 Coffea canephora HOM05D003444 ORTHO05D003963 1.5e-54 216.5 146 78.1
Rhsim08G0175500 Rhododendron simsii HOM05D003444 ORTHO05D003963 3.4e-54 215.3 174 74.1
Dinv38555 Davidia involucrata HOM05D003444 ORTHO05D003963 1.3e-53 213.4 161 76.4
vmacro19322 Vaccinium macrocarpon HOM05D003444 ORTHO05D003963 1.4e-52 209.9 186 68.3
PGR083G1868 Punica granatum HOM05D003444 ORTHO05D003963 4.6e-51 204.9 159 71.7
Peaxi162Scf00089g01529 Petunia axillaris HOM05D003444 ORTHO05D003963 1.0e-50 203.8 161 71.4
MSTRG.23156 Avicennia marina HOM05D003444 ORTHO05D003963 1.3e-50 203.4 161 69.6
Glyma.17G086600 Glycine max HOM05D003444 ORTHO05D003963 6.7e-50 201.1 147 73.5
Oeu046785.1 Olea europaea HOM05D003444 ORTHO05D003963 6.7e-50 201.1 141 75.9
Ca_16152_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.9e-49 199.5 146 71.9
Lj5A128T62 Lonicera japonica HOM05D003444 ORTHO05D003963 2.5e-49 199.1 136 79.4
GSVIVG01007683001 Vitis vinifera HOM05D003444 ORTHO05D003963 2.5e-49 199.1 146 74.7
ECA247G0281 Erigeron canadensis HOM05D003444 ORTHO05D003963 4.3e-49 198.4 143 74.1
HanXRQChr16g0504631 Helianthus annuus HOM05D003444 ORTHO05D003963 1.6e-48 196.4 149 75.2
Manes.14G062700 Manihot esculenta HOM05D003444 ORTHO05D003963 1.6e-48 196.4 146 76.0
Lsat_1_v5_gn_1_28101 Lactuca sativa HOM05D003444 ORTHO05D003963 2.1e-48 196.1 160 68.8
VMungo1309G2319 Vigna mungo HOM05D003444 ORTHO05D003963 4.8e-48 194.9 146 71.9
Cpa.g.sc35.80 Carica papaya HOM05D003444 ORTHO05D003963 8.1e-48 194.1 139 74.1
HanXRQChr02g0035691 Helianthus annuus HOM05D003444 ORTHO05D003963 1.1e-47 193.7 148 70.3
TAR629G1253 Trochodendron aralioides HOM05D003444 ORTHO05D003963 1.1e-47 193.7 146 72.6
Thecc.03G023900 Theobroma cacao HOM05D003444 ORTHO05D003963 1.4e-47 193.4 142 73.2
Nn4g22663 Nelumbo nucifera HOM05D003444 ORTHO05D003963 1.8e-47 193.0 146 72.6
arahy.Tifrunner.gnm1.ann1.NDZJ5A Arachis hypogaea HOM05D003444 ORTHO05D003963 3.1e-47 192.2 144 70.1
Phvul.002G107400 Phaseolus vulgaris HOM05D003444 ORTHO05D003963 4.0e-47 191.8 146 70.5
Prupe.5G169400 Prunus persica HOM05D003444 ORTHO05D003963 5.3e-47 191.4 143 70.6
CAN.G338.8 Capsicum annuum HOM05D003444 ORTHO05D003963 9.0e-47 190.7 157 68.8
Lj4g0001447 Lotus japonicus HOM05D003444 ORTHO05D003963 9.0e-47 190.7 144 70.1
TPR.G37557 Trifolium pratense HOM05D003444 ORTHO05D003963 9.0e-47 190.7 143 69.2
SGA_v2.0_scaffold25G10811 Striga asiatica HOM05D003444 ORTHO05D003963 1.5e-46 189.9 161 64.6
TPR.G31058 Trifolium pratense HOM05D003444 ORTHO05D003963 1.5e-46 189.9 146 67.8
Lalb_Chr08g0236641 Lupinus albus HOM05D003444 ORTHO05D003963 2.0e-46 189.5 146 71.2
Potri.002G197600 Populus trichocarpa HOM05D003444 ORTHO05D003963 2.0e-46 189.5 142 72.5
Lalb_Chr12g0201761 Lupinus albus HOM05D003444 ORTHO05D003963 2.6e-46 189.1 146 68.5
arahy.Tifrunner.gnm1.ann1.GAE861 Arachis hypogaea HOM05D003444 ORTHO05D003963 3.4e-46 188.7 144 69.4
Haze_07554 Corylus avellana HOM05D003444 ORTHO05D003963 3.4e-46 188.7 146 69.2
Gorai.001G071300 Gossypium raimondii HOM05D003444 ORTHO05D003963 3.4e-46 188.7 143 72.7
CANSAT80G2021 Cannabis sativa HOM05D003444 ORTHO05D003963 7.6e-46 187.6 145 71.0
Gohir.A07G063100 Gossypium hirsutum HOM05D003444 ORTHO05D003963 7.6e-46 187.6 143 72.7
Ca_21949_v3 Cicer arietinum L. HOM05D003444 ORTHO05D003963 1.3e-45 186.8 132 74.2
Gohir.D07G067800 Gossypium hirsutum HOM05D003444 ORTHO05D003963 1.3e-45 186.8 143 72.7
Duzib205G1696 Durio zibethinus HOM05D003444 ORTHO05D003963 2.9e-45 185.7 142 71.8
PSO478G2857 Papaver somniferum HOM05D003444 ORTHO05D003963 2.9e-45 185.7 157 65.6
Aqoxy3G01091 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 3.8e-45 185.3 150 68.7
TAR374G1632 Trochodendron aralioides HOM05D003444 ORTHO05D003963 3.8e-45 185.3 146 69.2
Migut.G00959 Erythranthe guttata HOM05D003444 ORTHO05D003963 4.9e-45 184.9 149 67.8
AUR62008171 Chenopodium quinoa HOM05D003444 ORTHO05D003963 8.4e-45 184.1 133 72.9
AUR62028748 Chenopodium quinoa HOM05D003444 ORTHO05D003963 8.4e-45 184.1 133 72.9
QL10p008500 Quercus lobata HOM05D003444 ORTHO05D003963 1.1e-44 183.7 155 65.2
QL10p008629 Quercus lobata HOM05D003444 ORTHO05D003963 1.1e-44 183.7 155 65.2
CiPaw.11G022500 Carya illinoinensis HOM05D003444 ORTHO05D003963 1.4e-44 183.3 149 67.8
Hund09457 Selenicereus undatus HOM05D003444 ORTHO05D003963 1.9e-44 183.0 144 69.4
SGA_v2.0_scaffold90G27874 Striga asiatica HOM05D003444 ORTHO05D003963 2.4e-44 182.6 161 63.4
CiPaw.12G029000 Carya illinoinensis HOM05D003444 ORTHO05D003963 3.2e-44 182.2 146 67.8
PSO017G6313 Papaver somniferum HOM05D003444 ORTHO05D003963 3.2e-44 182.2 157 65.0
EL10Ac5g10690 Beta vulgaris HOM05D003444 ORTHO05D003963 4.2e-44 181.8 133 72.9
COL.COLO4_30111 Corchorus olitorius HOM05D003444 ORTHO05D003963 4.2e-44 181.8 148 68.2
Eucgr.B03880 Eucalyptus grandis HOM05D003444 ORTHO05D003963 4.2e-44 181.8 149 67.8
Duzib068G1143 Durio zibethinus HOM05D003444 ORTHO05D003963 5.5e-44 181.4 140 70.7
MD06G1169900 Malus domestica HOM05D003444 ORTHO05D003963 5.5e-44 181.4 158 62.7
Ah.11g051380 Amaranthus hybridus HOM05D003444 ORTHO05D003963 1.2e-43 180.3 133 71.4
Solyc03g112520.3 Solanum lycopersicum HOM05D003444 ORTHO05D003963 1.2e-43 180.3 160 64.4
Eucgr.B00240 Eucalyptus grandis HOM05D003444 ORTHO05D003963 1.6e-43 179.9 128 75.0
FvH4_5g05840 Fragaria vesca HOM05D003444 ORTHO05D003963 2.7e-43 179.1 141 68.1
FAN18G3108 Fragaria x ananassa HOM05D003444 ORTHO05D003963 2.7e-43 179.1 141 68.1
Manes.06G108200 Manihot esculenta HOM05D003444 ORTHO05D003963 2.7e-43 179.1 158 67.1
FAN08G2080 Fragaria x ananassa HOM05D003444 ORTHO05D003963 3.5e-43 178.7 141 68.1
Glyma.06G179400 Glycine max HOM05D003444 ORTHO05D003963 3.5e-43 178.7 120 77.5
FAN04G2640 Fragaria x ananassa HOM05D003444 ORTHO05D003963 4.6e-43 178.3 141 68.1
Migut.O00133 Erythranthe guttata HOM05D003444 ORTHO05D003963 6.0e-43 177.9 151 64.9
Nitab4.5_0001647g0010 Nicotiana tabacum HOM05D003444 ORTHO05D003963 7.9e-43 177.6 160 63.8
arahy.Tifrunner.gnm1.ann1.N3JE1D Arachis hypogaea HOM05D003444 ORTHO05D003963 1.0e-42 177.2 147 63.3
arahy.Tifrunner.gnm1.ann1.P2M8BS Arachis hypogaea HOM05D003444 ORTHO05D003963 1.0e-42 177.2 147 62.6
RcHm_v2.0_Chr7g0192981 Rosa chinensis HOM05D003444 ORTHO05D003963 1.8e-42 176.4 141 66.0
arahy.Tifrunner.gnm1.ann1.V3MNVK Arachis hypogaea HOM05D003444 ORTHO05D003963 2.3e-42 176.0 147 62.6
Psat4g060120 Pisum sativum HOM05D003444 ORTHO05D003963 2.3e-42 176.0 144 63.9
CARHR082370 Cardamine hirsuta HOM05D003444 ORTHO05D003963 3.0e-42 175.6 146 68.5
Zm00001eb209200 Zea mays HOM05D003444 ORTHO05D003963 3.0e-42 175.6 159 61.6
Glyma.04G186400 Glycine max HOM05D003444 ORTHO05D003963 3.9e-42 175.3 113 80.5
TPR.G7254 Trifolium pratense HOM05D003444 ORTHO05D003963 3.9e-42 175.3 132 68.2
Dinv20618 Davidia involucrata HOM05D003444 ORTHO05D003963 5.1e-42 174.9 106 83.0
Sed0021330 Sechium edule HOM05D003444 ORTHO05D003963 5.1e-42 174.9 161 62.1
Sopen03g031580 Solanum pennellii HOM05D003444 ORTHO05D003963 6.7e-42 174.5 102 85.3
Aqoxy3G02821 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 1.1e-41 173.7 125 73.6
MBI10_g32035_MAGBIO Magnolia biondii HOM05D003444 ORTHO05D003963 1.5e-41 173.3 142 67.6
PGSC0003DMG400018108 Solanum tuberosum HOM05D003444 ORTHO05D003963 1.9e-41 172.9 159 62.9
Aqoxy1G03753 Aquilegia oxysepala HOM05D003444 ORTHO05D003963 3.3e-41 172.2 122 74.6
arahy.Tifrunner.gnm1.ann1.T862AX Arachis hypogaea HOM05D003444 ORTHO05D003963 3.3e-41 172.2 147 61.9
Sp5g08230 Schrenkiella parvula HOM05D003444 ORTHO05D003963 3.3e-41 172.2 153 64.1
ClCG09G013270 Citrullus lanatus HOM05D003444 ORTHO05D003963 4.3e-41 171.8 127 71.7
SalBow5G0548 Salvia bowleyana HOM05D003444 ORTHO05D003963 4.3e-41 171.8 115 76.5
Zm00001eb231610 Zea mays HOM05D003444 ORTHO05D003963 5.6e-41 171.4 158 61.4
ATR1152G109 Amborella trichopoda HOM05D003444 ORTHO05D003963 7.4e-41 171.0 143 63.6
Os06g0474200 Oryza sativa ssp. japonica HOM05D003444 ORTHO05D003963 7.4e-41 171.0 147 65.3
THA.LOC104809841 Tarenaya hassleriana HOM05D003444 ORTHO05D003963 9.6e-41 170.6 152 64.5
Aa31sc491G40 Aethionema arabicum HOM05D003444 ORTHO05D003963 3.7e-40 168.7 102 85.3
Glyma.05G040200 Glycine max HOM05D003444 ORTHO05D003963 3.7e-40 168.7 107 80.4
Carub.0005s2076 Capsella rubella HOM05D003444 ORTHO05D003963 4.8e-40 168.3 154 64.9
Thhalv10010523m.g Eutrema salsugineum HOM05D003444 ORTHO05D003963 4.8e-40 168.3 153 64.1
MELO3C026275.2 Cucumis melo HOM05D003444 ORTHO05D003963 8.2e-40 167.5 142 64.8
C08p29430 Brassica napus HOM05D003444 ORTHO05D003963 1.1e-39 167.2 150 60.7
BolC8t50544H Brassica oleracea HOM05D003444 ORTHO05D003963 1.1e-39 167.2 150 60.7
Ciclev10020974m.g Citrus clementina HOM05D003444 ORTHO05D003963 1.1e-39 167.2 146 60.3
CsaV3_1G001270 Cucumis sativus L. HOM05D003444 ORTHO05D003963 1.1e-39 167.2 147 64.6
CDE05G0978 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 1.4e-39 166.8 146 61.6
DCAR_026161 Daucus carota HOM05D003444 ORTHO05D003963 1.4e-39 166.8 149 65.1
Medtr3g077320 Medicago truncatula HOM05D003444 ORTHO05D003963 2.4e-39 166.0 134 67.2
Lj1g0020971 Lotus japonicus HOM05D003444 ORTHO05D003963 3.1e-39 165.6 114 77.2
TWI79G0312 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 3.1e-39 165.6 144 61.8
Cfa019176 Carpinus fangiana HOM05D003444 ORTHO05D003963 4.0e-39 165.2 129 69.8
A09p47170 Brassica napus HOM05D003444 ORTHO05D003963 6.9e-39 164.5 150 60.0
Sc12g0005160 Simmondsia chinensis HOM05D003444 ORTHO05D003963 9.0e-39 164.1 130 66.9
CDE11G0533 Ceratophyllum demersum HOM05D003444 ORTHO05D003963 1.2e-38 163.7 147 60.5
BraA09t40179Z Brassica rapa HOM05D003444 ORTHO05D003963 1.5e-38 163.3 151 60.3
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 2.0e-38 162.9 133 66.9
SGA_v2.0_scaffold90G27871 Striga asiatica HOM05D003444 ORTHO05D003963 2.6e-38 162.5 125 68.8
BcaB01g00212 Brassica carinata HOM05D003444 ORTHO05D003963 3.4e-38 162.2 155 58.7
AT3G54170 Arabidopsis thaliana HOM05D003444 ORTHO05D003963 7.6e-38 161.0 102 82.4
COL.COLO4_30123 Corchorus olitorius HOM05D003444 ORTHO05D003963 1.3e-37 160.2 153 62.1
BcaC08g44673 Brassica carinata HOM05D003444 ORTHO05D003963 2.2e-37 159.5 146 62.3
BcaNung05459 Brassica carinata HOM05D003444 ORTHO05D003963 2.2e-37 159.5 146 62.3
A07p22020 Brassica napus HOM05D003444 ORTHO05D003963 2.2e-37 159.5 146 62.3
C06p22000 Brassica napus HOM05D003444 ORTHO05D003963 2.2e-37 159.5 146 62.3
BolC6t37388H Brassica oleracea HOM05D003444 ORTHO05D003963 2.2e-37 159.5 146 62.3
BraA07t29885Z Brassica rapa HOM05D003444 ORTHO05D003963 2.2e-37 159.5 146 62.3
unitig_8.g3056 Utricularia gibba HOM05D003444 ORTHO05D003963 2.9e-37 159.1 141 61.7
BcaB02g07746 Brassica carinata HOM05D003444 ORTHO05D003963 8.4e-37 157.5 147 61.9
AL5G35210 Arabidopsis lyrata HOM05D003444 ORTHO05D003963 1.1e-36 157.1 102 79.4
TWI75G1457 Tripterygium wilfordii HOM05D003444 ORTHO05D003963 3.2e-36 155.6 142 61.3
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 6.0e-35 151.4 158 57.6
Nitab4.5_0001284g0080 Nicotiana tabacum HOM05D003444 ORTHO05D003963 1.8e-34 149.8 160 57.5
HPP92_013532 Vanilla planifolia HOM05D003444 ORTHO05D003963 1.8e-34 149.8 146 57.5
arahy.Tifrunner.gnm1.ann1.9FBM9V Arachis hypogaea HOM05D003444 ORTHO05D003963 8.7e-34 147.5 143 57.3
Hma1.2p1_0046F.1_g026870 Hydrangea macrophylla HOM05D003444 ORTHO05D003963 2.2e-32 142.9 80 90.0
CSS0046637 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 2.8e-32 142.5 77 93.5
arahy.Tifrunner.gnm1.ann1.BAEJ4E Arachis hypogaea HOM05D003444 ORTHO05D003963 6.3e-32 141.4 200 45.5
Psat0s2597g0040 Pisum sativum HOM05D003444 ORTHO05D003963 7.6e-30 134.4 80 83.8
SEGI_34823 Sequoiadendron giganteum HOM05D003444 ORTHO05D003963 8.5e-29 131.0 135 54.8
AagrBONN_evm.TU.Sc2ySwM_362.1384 Anthoceros agrestis HOM05D003444 ORTHO05D003963 5.1e-26 121.7 120 57.5
Pp3c8_10480 Physcomitrium patens HOM05D003444 ORTHO05D003963 3.7e-24 115.5 130 49.2
Mapoly0061s0094 Marchantia polymorpha HOM05D003444 ORTHO05D003963 6.3e-24 114.8 152 44.7
SMO270G0025 Selaginella moellendorffii HOM05D003444 ORTHO05D003963 7.7e-22 107.8 115 52.2
Sed0013109 Sechium edule HOM05D003444 ORTHO05D003963 1.0e-21 107.5 116 54.3
ClCG06G017220 Citrullus lanatus HOM05D003444 ORTHO05D003963 3.8e-21 105.5 65 83.1
CSS0007999 Camellia sinensis var. sinensis HOM05D003444 ORTHO05D003963 2.5e-20 102.8 102 64.7
SHI35645 Sapria himalayana HOM05D003444 ORTHO05D003963 4.8e-16 88.6 56 80.4
CBR_g57069 Chara braunii HOM05D003444 ORTHO05D003963 6.9e-15 84.7 111 40.5
Actinidia33091 Actinidia chinensis HOM05D003444 ORTHO05D003963 9.1e-15 84.3 127 49.6
Prupe.5G168700 Prunus persica HOM05D003444 ORTHO05D003963 1.3e-13 80.5 51 78.4
Lsat_1_v5_gn_4_76300 Lactuca sativa HOM05D003444 ORTHO05D003963 2.2e-13 79.7 45 82.2
CBR_g23963 Chara braunii HOM05D003444 ORTHO05D003963 9.4e-12 74.3 139 33.1
Sc12g0005130 Simmondsia chinensis HOM05D003444 ORTHO05D003963 1.6e-11 73.6 64 60.9
HanXRQChr01g0018841 Helianthus annuus HOM05D003444 ORTHO05D003963 2.0e-06 56.6 68 47.1


User provided reference genes

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