Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1741.9 849 100.0
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1721.4 849 99.1
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1385.9 811 82.1
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1381.3 974 71.5
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1349.7 850 76.0
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1348.2 809 80.1
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1341.6 824 77.7
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1339.7 851 74.0
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1330.5 850 74.2
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1327.0 852 74.2
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1317.0 847 74.0
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1316.6 850 73.6
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1312.7 849 72.8
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1310.0 851 73.3
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1308.9 881 71.1
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1307.7 854 73.2
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1307.4 889 71.9
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1305.0 851 73.1
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1299.3 853 72.7
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1294.6 853 72.5
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1293.9 852 71.9
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1293.5 853 72.2
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1286.6 851 72.6
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1280.4 849 72.0
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1275.0 851 70.9
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1272.7 853 70.8
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1271.1 853 70.5
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1270.8 854 71.2
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1268.4 849 69.5
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1262.3 854 69.9
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1255.7 855 69.8
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1255.4 852 70.5
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1253.4 847 69.8
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1252.7 853 70.2
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1249.2 849 69.4
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1246.9 859 68.8
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1246.5 855 70.8
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1245.0 852 69.7
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1239.2 850 69.3
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1236.9 852 68.2
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1235.3 849 69.5
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1234.2 848 69.0
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1232.6 847 68.1
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1232.2 867 67.9
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1231.1 853 69.2
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1228.8 850 68.9
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1227.6 849 68.4
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1226.1 850 68.9
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1223.4 863 68.3
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1223.4 856 68.0
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1219.5 849 67.7
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1214.9 848 68.6
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1211.8 874 66.9
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1211.8 849 68.2
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1210.7 855 68.1
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1209.9 855 68.2
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1204.1 850 68.2
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1202.2 855 68.0
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1201.8 855 67.6
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1196.8 856 67.9
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1194.9 850 67.1
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1194.5 847 65.5
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1191.0 849 66.9
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1190.6 854 68.1
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 848 68.0
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1182.9 848 67.0
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1177.2 851 64.7
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1174.1 856 66.4
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1173.7 852 64.9
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1172.1 850 64.5
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1170.6 851 67.8
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1164.8 860 65.3
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1161.7 853 64.1
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1159.4 884 62.6
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1158.7 853 64.2
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1156.7 855 64.2
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1153.3 850 66.0
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1151.7 854 63.8
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1146.7 868 62.9
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1145.6 870 63.8
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1144.4 887 61.9
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1143.6 846 64.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1142.9 856 65.1
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1141.3 851 65.6
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1139.0 845 65.6
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1120.5 858 63.5
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 844 63.2
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 0.0e+00 1114.8 763 70.8
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1114.0 727 71.5
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 0.0e+00 1109.0 852 64.0
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1108.6 752 68.6
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1103.6 846 62.5
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1101.7 838 63.2
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1096.3 770 65.5
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1090.5 778 66.1
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 0.0e+00 1090.5 718 70.6
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1090.1 772 65.7
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1088.9 858 61.5
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1084.7 770 65.5
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.2e-311 1073.2 775 64.6
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.7e-311 1072.4 876 60.4
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 2.3e-311 1072.0 771 63.9
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-309 1066.2 776 64.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 6.3e-309 1063.9 769 63.6
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 2.4e-308 1062.0 854 60.7
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.6e-307 1059.3 813 62.0
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 2.0e-307 1058.9 773 63.9
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.6e-304 1049.3 820 59.6
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 4.7e-304 1047.7 769 62.0
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 5.2e-303 1044.3 775 63.2
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 5.0e-298 1027.7 909 56.9
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 2.5e-297 1025.4 777 62.4
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 6.2e-296 1020.8 851 58.3
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.7e-293 1012.7 820 58.5
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 2.9e-293 1011.9 770 62.1
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.1e-289 1000.0 854 58.9
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.3e-274 949.1 801 57.6
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.9e-268 929.5 650 69.7
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.0e-258 897.1 857 51.9
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.4e-255 885.9 598 72.4
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.5e-251 872.1 768 56.0
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.9e-244 849.7 821 50.8
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 6.0e-243 844.7 797 52.8
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 6.9e-239 831.2 807 49.9
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.7e-227 792.7 627 60.8
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 6.7e-226 788.1 788 48.6
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 9.4e-220 767.7 662 58.9
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 4.5e-214 748.8 471 71.5
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 6.5e-213 745.0 776 49.6
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.6e-206 723.8 435 74.7
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.2e-198 697.6 663 49.9
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.8e-192 676.4 429 70.9
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.4e-186 657.5 587 57.2
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.3e-184 651.0 470 67.9
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 8.6e-181 638.3 530 59.2
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.2e-177 627.9 426 67.8
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 3.4e-177 626.3 669 50.5
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.6e-166 590.9 874 38.4
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.3e-152 544.7 580 51.0
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 4.8e-147 526.2 777 41.6
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 3.7e-139 500.0 406 62.1
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.7e-136 491.1 434 59.2
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.6e-131 474.6 321 67.9
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 4.6e-126 456.4 271 76.8
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.8e-123 447.2 340 63.5
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.1e-114 416.8 404 54.7
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.9e-111 407.9 425 52.7
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 7.4e-108 396.0 399 56.1
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 5.0e-96 356.7 242 69.0
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 3.6e-86 323.9 529 35.2
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.3e-83 315.5 829 31.0
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 9.8e-76 289.3 205 67.3
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 2.4e-66 258.1 202 58.9
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.3e-55 220.7 167 60.5
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 6.8e-53 213.4 139 71.2
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.3e-48 199.1 100 85.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.9e-43 181.4 193 50.3
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.5e-39 169.1 100 75.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 7.1e-34 150.2 197 40.1
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.1e-29 136.3 97 66.0
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 5.8e-28 130.6 123 56.9
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.9e-26 125.6 86 65.1
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.7e-25 121.7 84 67.9
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 3.3e-23 114.8 78 66.7
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.6e-22 112.5 92 60.9
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.2e-20 106.3 84 60.7
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 3.8e-19 101.3 61 80.3
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.4e-18 99.4 81 61.7
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 4.3e-15 87.8 46 82.6
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 6.3e-14 84.0 40 85.0
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.8e-13 82.4 39 87.2
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 4.5e-12 77.8 59 64.4
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.5e-10 72.0 44 77.3
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.6e-09 69.3 95 38.9
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.1e-09 68.9 94 39.4
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 2.7e-09 68.6 69 55.1


User provided reference genes

Program Settings