Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033509 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.6e-121 438.7 208 100.0
CSS0019957 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.5e-108 395.6 201 93.5
CSS0002423 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 9.3e-103 377.1 201 90.5
CSS0037116 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 6.1e-102 374.4 201 90.0
Cfa013324 Carpinus fangiana HOM05D005859 ORTHO05D007576 3.7e-99 365.2 201 85.1
Haze_21816 Corylus avellana HOM05D005859 ORTHO05D007576 1.1e-98 363.6 201 84.6
Gohir.D09G062800 Gossypium hirsutum HOM05D005859 ORTHO05D007576 3.1e-98 362.1 201 85.1
Dinv07263 Davidia involucrata HOM05D005859 ORTHO05D007576 5.3e-98 361.3 201 86.1
Actinidia22411 Actinidia chinensis HOM05D005859 ORTHO05D007576 6.9e-98 360.9 201 86.1
Prupe.1G454800 Prunus persica HOM05D005859 ORTHO05D007576 9.0e-98 360.5 201 85.6
Rhsim05G0088100 Rhododendron simsii HOM05D005859 ORTHO05D007576 1.2e-97 360.1 201 86.1
COL.COLO4_34684 Corchorus olitorius HOM05D005859 ORTHO05D007576 2.6e-97 359.0 201 83.6
Gorai.006G077600 Gossypium raimondii HOM05D005859 ORTHO05D007576 2.6e-97 359.0 201 84.6
QL12p026076 Quercus lobata HOM05D005859 ORTHO05D007576 2.6e-97 359.0 201 84.6
Duzib151G0554 Durio zibethinus HOM05D005859 ORTHO05D007576 3.4e-97 358.6 201 84.1
ClCG08G012440 Citrullus lanatus HOM05D005859 ORTHO05D007576 4.5e-97 358.2 201 84.6
CsaV3_2G031130 Cucumis sativus L. HOM05D005859 ORTHO05D007576 1.0e-96 357.1 201 84.1
CiPaw.07G208600 Carya illinoinensis HOM05D005859 ORTHO05D007576 1.7e-96 356.3 201 84.6
Ca_15630_v3 Cicer arietinum L. HOM05D005859 ORTHO05D007576 1.7e-96 356.3 201 84.1
MELO3C011163.2 Cucumis melo HOM05D005859 ORTHO05D007576 2.9e-96 355.5 201 84.1
Gohir.A09G063900 Gossypium hirsutum HOM05D005859 ORTHO05D007576 3.8e-96 355.1 201 83.6
Lj1g0020437 Lotus japonicus HOM05D005859 ORTHO05D007576 5.0e-96 354.8 201 83.1
Rhsim02G0125100 Rhododendron simsii HOM05D005859 ORTHO05D007576 6.5e-96 354.4 201 85.6
CANSAT64G2965 Cannabis sativa HOM05D005859 ORTHO05D007576 8.5e-96 354.0 201 83.1
MD08G1121000 Malus domestica HOM05D005859 ORTHO05D007576 1.1e-95 353.6 201 83.1
Duzib151G0446 Durio zibethinus HOM05D005859 ORTHO05D007576 1.9e-95 352.8 201 83.6
RcHm_v2.0_Chr6g0305541 Rosa chinensis HOM05D005859 ORTHO05D007576 1.9e-95 352.8 201 82.1
Cpa.g.sc10.203 Carica papaya HOM05D005859 ORTHO05D007576 2.5e-95 352.4 201 83.1
Thecc.04G293600 Theobroma cacao HOM05D005859 ORTHO05D007576 2.5e-95 352.4 201 83.6
Ciclev10009277m.g Citrus clementina HOM05D005859 ORTHO05D007576 3.2e-95 352.1 201 82.1
Glyma.04G078700 Glycine max HOM05D005859 ORTHO05D007576 4.2e-95 351.7 201 83.1
VMungo1309G0784 Vigna mungo HOM05D005859 ORTHO05D007576 9.4e-95 350.5 201 82.6
Sed0013908 Sechium edule HOM05D005859 ORTHO05D007576 1.2e-94 350.1 201 82.6
Atru.chr7.2673 Acer truncatum HOM05D005859 ORTHO05D007576 1.6e-94 349.7 201 81.6
Glyma.06G080300 Glycine max HOM05D005859 ORTHO05D007576 1.6e-94 349.7 201 83.1
Sabra06G0214800 Salix brachista HOM05D005859 ORTHO05D007576 1.6e-94 349.7 201 81.6
Psat5g022960 Pisum sativum HOM05D005859 ORTHO05D007576 2.1e-94 349.4 201 81.1
Potri.006G277100 Populus trichocarpa HOM05D005859 ORTHO05D007576 2.7e-94 349.0 201 81.6
FvH4_2g36340 Fragaria vesca HOM05D005859 ORTHO05D007576 4.6e-94 348.2 201 81.6
FAN15G0047 Fragaria x ananassa HOM05D005859 ORTHO05D007576 4.6e-94 348.2 201 81.6
FAN20G1422 Fragaria x ananassa HOM05D005859 ORTHO05D007576 7.9e-94 347.4 201 81.1
Phvul.009G104500 Phaseolus vulgaris HOM05D005859 ORTHO05D007576 1.0e-93 347.1 201 82.6
Lsat_1_v5_gn_5_41801 Lactuca sativa HOM05D005859 ORTHO05D007576 1.8e-93 346.3 203 81.3
Manes.08G049200 Manihot esculenta HOM05D005859 ORTHO05D007576 2.3e-93 345.9 200 82.5
ECA238G0328 Erigeron canadensis HOM05D005859 ORTHO05D007576 3.0e-93 345.5 198 81.8
CSS0022235 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.5e-92 343.2 201 83.6
Sed0022456 Sechium edule HOM05D005859 ORTHO05D007576 2.0e-92 342.8 201 81.1
Sc10g0009100 Simmondsia chinensis HOM05D005859 ORTHO05D007576 2.0e-92 342.8 200 80.5
TPR.G1368 Trifolium pratense HOM05D005859 ORTHO05D007576 2.0e-92 342.8 201 80.6
Medtr3g109360 Medicago truncatula HOM05D005859 ORTHO05D007576 2.5e-92 342.4 201 80.6
Oeu056039.1 Olea europaea HOM05D005859 ORTHO05D007576 2.5e-92 342.4 203 79.3
Lalb_Chr11g0064301 Lupinus albus HOM05D005859 ORTHO05D007576 4.3e-92 341.7 201 80.6
TWI63G1176 Tripterygium wilfordii HOM05D005859 ORTHO05D007576 5.7e-92 341.3 201 79.1
Potri.018G003900 Populus trichocarpa HOM05D005859 ORTHO05D007576 1.3e-91 340.1 200 80.5
Ah.07g199340 Amaranthus hybridus HOM05D005859 ORTHO05D007576 2.4e-90 335.9 201 77.6
DCAR_010833 Daucus carota HOM05D005859 ORTHO05D007576 3.1e-90 335.5 200 82.0
AUR62007184 Chenopodium quinoa HOM05D005859 ORTHO05D007576 9.1e-90 334.0 201 77.1
THA.LOC104814931 Tarenaya hassleriana HOM05D005859 ORTHO05D007576 1.2e-89 333.6 201 79.1
HanXRQChr14g0440281 Helianthus annuus HOM05D005859 ORTHO05D007576 1.5e-89 333.2 191 81.7
TAR625G0738 Trochodendron aralioides HOM05D005859 ORTHO05D007576 1.5e-89 333.2 214 76.2
EL10Ac5g12246 Beta vulgaris HOM05D005859 ORTHO05D007576 2.0e-89 332.8 201 77.1
Sabra18G0001700 Salix brachista HOM05D005859 ORTHO05D007576 2.0e-89 332.8 200 80.5
Sabra18G0009500 Salix brachista HOM05D005859 ORTHO05D007576 2.0e-89 332.8 200 80.5
Eucgr.A02021 Eucalyptus grandis HOM05D005859 ORTHO05D007576 2.6e-89 332.4 201 77.1
PGR042G0112 Punica granatum HOM05D005859 ORTHO05D007576 2.9e-88 328.9 201 75.6
MSTRG.12122 Avicennia marina HOM05D005859 ORTHO05D007576 1.1e-87 327.0 198 78.8
Nitab4.5_0003379g0070 Nicotiana tabacum HOM05D005859 ORTHO05D007576 1.1e-87 327.0 202 76.7
Nitab4.5_0006282g0050 Nicotiana tabacum HOM05D005859 ORTHO05D007576 1.1e-87 327.0 202 77.2
Peaxi162Scf00149g00014 Petunia axillaris HOM05D005859 ORTHO05D007576 1.4e-87 326.6 202 77.2
Cc09_g05860 Coffea canephora HOM05D005859 ORTHO05D007576 2.5e-87 325.9 199 77.9
Nn2g12765 Nelumbo nucifera HOM05D005859 ORTHO05D007576 4.2e-87 325.1 209 75.6
CSS0005155 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.6e-86 323.2 202 80.2
Migut.A01131 Erythranthe guttata HOM05D005859 ORTHO05D007576 3.6e-86 322.0 202 78.2
SGA_v2.0_scaffold104G30176 Striga asiatica HOM05D005859 ORTHO05D007576 3.6e-86 322.0 197 78.2
SalBow1G3786 Salvia bowleyana HOM05D005859 ORTHO05D007576 6.1e-86 321.2 202 77.2
A06p35610 Brassica napus HOM05D005859 ORTHO05D007576 1.4e-85 320.1 202 76.7
CAN.G149.19 Capsicum annuum HOM05D005859 ORTHO05D007576 1.8e-85 319.7 195 77.4
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 3.9e-85 318.5 202 76.2
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 3.9e-85 318.5 202 76.2
AL6G36490 Arabidopsis lyrata HOM05D005859 ORTHO05D007576 8.8e-85 317.4 202 76.2
PGSC0003DMG400010428 Solanum tuberosum HOM05D005859 ORTHO05D007576 8.8e-85 317.4 195 76.4
CARHR188610 Cardamine hirsuta HOM05D005859 ORTHO05D007576 1.1e-84 317.0 201 76.6
Thhalv10004821m.g Eutrema salsugineum HOM05D005859 ORTHO05D007576 1.1e-84 317.0 201 75.6
AT5G24840 Arabidopsis thaliana HOM05D005859 ORTHO05D007576 1.5e-84 316.6 202 76.2
Solyc02g068650.2 Solanum lycopersicum HOM05D005859 ORTHO05D007576 2.0e-84 316.2 195 75.9
Aa31LG11G4050 Aethionema arabicum HOM05D005859 ORTHO05D007576 2.6e-84 315.8 200 78.0
Sp2g22610 Schrenkiella parvula HOM05D005859 ORTHO05D007576 2.6e-84 315.8 201 75.1
MBI07_g41262_MAGBIO Magnolia biondii HOM05D005859 ORTHO05D007576 3.3e-84 315.5 200 76.0
Aqoxy7G02813 Aquilegia oxysepala HOM05D005859 ORTHO05D007576 9.7e-84 313.9 218 72.5
Carub.0006s2269 Capsella rubella HOM05D005859 ORTHO05D007576 2.2e-83 312.8 191 78.5
Sopen02g017820 Solanum pennellii HOM05D005859 ORTHO05D007576 2.8e-83 312.4 195 74.9
PSO063G7086 Papaver somniferum HOM05D005859 ORTHO05D007576 1.4e-82 310.1 212 70.8
BcaB04g19801 Brassica carinata HOM05D005859 ORTHO05D007576 1.2e-81 307.0 201 74.6
HPP92_010546 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.6e-81 305.8 196 73.5
unitig_21.g20313 Utricularia gibba HOM05D005859 ORTHO05D007576 4.5e-81 305.1 186 77.4
HPP92_010527 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.2e-80 302.8 196 73.0
BcaC04g23549 Brassica carinata HOM05D005859 ORTHO05D007576 6.5e-80 301.2 202 71.3
Zm00001eb208790 Zea mays HOM05D005859 ORTHO05D007576 7.2e-79 297.7 192 74.0
HPP92_010585 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.6e-76 289.3 187 74.3
CDE05G2856 Ceratophyllum demersum HOM05D005859 ORTHO05D007576 3.3e-76 288.9 194 71.6
MD15G1100000 Malus domestica HOM05D005859 ORTHO05D007576 1.1e-74 283.9 189 73.5
SEGI_16955 Sequoiadendron giganteum HOM05D005859 ORTHO05D007576 2.0e-73 279.6 225 61.3
ATR0697G154 Amborella trichopoda HOM05D005859 ORTHO05D007576 2.7e-73 279.3 189 69.8
SMO358G0125 Selaginella moellendorffii HOM05D005859 ORTHO05D007576 5.9e-73 278.1 197 65.5
Pp3c24_9600 Physcomitrium patens HOM05D005859 ORTHO05D007576 1.0e-72 277.3 200 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1368 Anthoceros agrestis HOM05D005859 ORTHO05D007576 1.1e-71 273.9 205 63.9
CSS0049229 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 8.0e-70 267.7 201 68.7
Mapoly0026s0057 Marchantia polymorpha HOM05D005859 ORTHO05D007576 8.8e-69 264.2 220 58.2
CBR_g63067 Chara braunii HOM05D005859 ORTHO05D007576 2.0e-68 263.1 215 58.6
GSVIVG01035552001 Vitis vinifera HOM05D005859 ORTHO05D007576 3.4e-68 262.3 177 74.0
AUR62018819 Chenopodium quinoa HOM05D005859 ORTHO05D007576 5.4e-66 255.0 201 62.2
CSS0043283 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.0e-64 250.8 201 65.7
Dinv07265 Davidia involucrata HOM05D005859 ORTHO05D007576 1.6e-62 243.4 136 87.5
Cre07.g314550 Chlamydomonas reinhardtii HOM05D005859 ORTHO05D007576 3.7e-59 232.3 207 54.6
MCO01G481 Micromonas commoda HOM05D005859 ORTHO05D007576 9.5e-55 217.6 180 56.1
HPP92_010304 Vanilla planifolia HOM05D005859 ORTHO05D007576 3.0e-53 212.6 208 53.8
CSS0016583 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 9.8e-52 207.6 120 81.7
HanXRQChr07g0193381 Helianthus annuus HOM05D005859 ORTHO05D007576 2.2e-51 206.5 110 88.2
HanXRQChr09g0275211 Helianthus annuus HOM05D005859 ORTHO05D007576 4.1e-50 202.2 110 84.5
Lj2P347T15 Lonicera japonica HOM05D005859 ORTHO05D007576 2.0e-49 199.9 109 87.2
PRCOL_00003713 Prasinoderma coloniale HOM05D005859 ORTHO05D007576 4.7e-46 188.7 182 52.2
CSS0012487 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.1e-45 186.0 201 50.7
Haze_26141 Corylus avellana HOM05D005859 ORTHO05D007576 4.9e-43 178.7 181 48.1
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 1.3e-32 144.1 83 84.3
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 3.3e-31 139.4 85 78.8
BolC9t53628H Brassica oleracea HOM05D005859 ORTHO05D007576 1.4e-29 134.0 71 83.1
HPP92_010638 Vanilla planifolia HOM05D005859 ORTHO05D007576 8.9e-29 131.3 71 83.1
HPP92_010538 Vanilla planifolia HOM05D005859 ORTHO05D007576 9.9e-20 101.3 56 80.4
CSS0020153 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 5.4e-18 95.5 49 87.8
BolC9t53624H Brassica oleracea HOM05D000880 ORTHO05D008158 1.3e-16 90.9 56 76.8
A09p06390 Brassica napus HOM05D000880 ORTHO05D008158 2.4e-13 80.1 53 73.6
AagrBONN_evm.TU.Sc2ySwM_117.3790 Anthoceros agrestis HOM05D005695 ORTHO05D007810 2.1e-09 67.0 179 27.4
SEGI_31772 Sequoiadendron giganteum HOM05D005695 ORTHO05D007810 1.8e-08 63.9 176 29.5
Eucgr.D01073 Eucalyptus grandis HOM05D005695 ORTHO05D007810 3.0e-08 63.2 177 31.1
Os06g0236900 Oryza sativa ssp. japonica HOM05D005859 ORTHO05D007576 3.9e-08 62.8 32 84.4
PSO782G5257 Papaver somniferum HOM05D005695 ORTHO05D007810 3.9e-08 62.8 173 30.1
HPP92_023786 Vanilla planifolia HOM05D005695 ORTHO05D007810 3.9e-08 62.8 182 30.8
Mapoly0006s0284 Marchantia polymorpha HOM05D005695 ORTHO05D007810 1.5e-07 60.8 148 27.7
Zm00001eb004570 Zea mays HOM05D005695 ORTHO05D007810 1.5e-07 60.8 176 30.1
MCO05G350 Micromonas commoda HOM05D005695 ORTHO05D007810 2.5e-07 60.1 184 24.5
ATR0568G060 Amborella trichopoda HOM05D005695 ORTHO05D007810 3.3e-07 59.7 176 30.7
CBR_g38752 Chara braunii HOM05D005695 ORTHO05D007810 4.3e-07 59.3 183 27.3
Glyma.07G122300 Glycine max HOM05D005695 ORTHO05D007810 4.3e-07 59.3 174 29.3
PSO063G4708 Papaver somniferum HOM05D005695 ORTHO05D007810 4.3e-07 59.3 173 28.9
CDE11G0447 Ceratophyllum demersum HOM05D005695 ORTHO05D007810 9.6e-07 58.2 174 31.0
HanXRQChr04g0117691 Helianthus annuus HOM05D005695 ORTHO05D007810 1.3e-06 57.8 197 31.0
ECA236G4408 Erigeron canadensis HOM05D005695 ORTHO05D007810 1.6e-06 57.4 176 28.4
Nn7g37385 Nelumbo nucifera HOM05D005695 ORTHO05D007810 1.6e-06 57.4 171 29.8
TAR715G0002 Trochodendron aralioides HOM05D005695 ORTHO05D007810 1.6e-06 57.4 172 28.5
AUR62038021 Chenopodium quinoa HOM05D005695 ORTHO05D007810 2.1e-06 57.0 182 30.2
Cc05_g03930 Coffea canephora HOM05D005695 ORTHO05D007810 2.1e-06 57.0 125 34.4
DCAR_015741 Daucus carota HOM05D005695 ORTHO05D007810 2.1e-06 57.0 175 28.6
Pp3c18_9830 Physcomitrium patens HOM05D005695 ORTHO05D007810 4.8e-06 55.8 154 27.9
Aqoxy3G02210 Aquilegia oxysepala HOM05D005695 ORTHO05D007810 6.2e-06 55.5 181 29.8
Gorai.007G250100 Gossypium raimondii HOM05D005695 ORTHO05D007810 6.2e-06 55.5 180 30.6
Potri.013G070800 Populus trichocarpa HOM05D005695 ORTHO05D007810 6.2e-06 55.5 181 29.8
Cfa003697 Carpinus fangiana HOM05D005695 ORTHO05D007810 8.1e-06 55.1 175 29.7
Cre04.g213500 Chlamydomonas reinhardtii HOM05D005695 ORTHO05D007810 8.1e-06 55.1 122 32.0
Ciclev10032172m.g Citrus clementina HOM05D005695 ORTHO05D007810 8.1e-06 55.1 176 31.8
Os01g0535900 Oryza sativa ssp. japonica HOM05D005695 ORTHO05D007810 8.1e-06 55.1 179 29.1


User provided reference genes

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