Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033456 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 2.1e-74 282.3 150 100.0
CSS0008122 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 7.5e-72 273.9 149 97.3
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 1.0e-68 263.5 148 93.9
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 6.8e-65 250.8 148 88.5
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 2.9e-63 245.4 148 85.8
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 2.4e-62 242.3 148 85.8
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 3.2e-62 241.9 148 85.1
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 9.2e-62 240.4 148 85.1
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 2.1e-61 239.2 148 83.8
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 7.8e-61 237.3 148 82.4
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 1.0e-60 236.9 148 83.1
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 2.3e-60 235.7 148 82.4
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.0e-60 235.3 148 81.1
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 3.0e-60 235.3 148 82.4
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 3.9e-60 235.0 148 81.8
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 3.9e-60 235.0 148 81.8
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 6.6e-60 234.2 148 81.1
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 8.6e-60 233.8 148 83.1
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 1.5e-59 233.0 148 81.1
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.9e-59 232.6 148 81.8
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 2.5e-59 232.3 148 80.4
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 3.3e-59 231.9 148 80.4
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 4.3e-59 231.5 148 81.1
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 7.3e-59 230.7 148 81.1
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 7.3e-59 230.7 148 81.1
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 9.5e-59 230.3 148 80.4
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 9.5e-59 230.3 148 80.4
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 9.5e-59 230.3 148 80.4
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 1.2e-58 229.9 148 80.4
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 1.2e-58 229.9 148 81.1
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 1.6e-58 229.6 148 80.4
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 3.6e-58 228.4 148 79.7
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 3.6e-58 228.4 148 79.7
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 3.6e-58 228.4 148 77.7
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 3.6e-58 228.4 148 80.4
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 3.6e-58 228.4 148 80.4
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 4.7e-58 228.0 148 80.4
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 4.7e-58 228.0 148 81.1
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 6.2e-58 227.6 148 77.7
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 6.2e-58 227.6 148 77.7
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 8.1e-58 227.3 148 79.7
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 1.8e-57 226.1 148 79.1
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 1.8e-57 226.1 148 79.1
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 2.4e-57 225.7 148 79.7
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 2.4e-57 225.7 148 77.7
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 3.1e-57 225.3 148 79.1
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 3.1e-57 225.3 148 77.0
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 4.0e-57 224.9 148 77.7
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 5.2e-57 224.6 148 76.4
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 6.8e-57 224.2 148 77.0
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 6.8e-57 224.2 148 77.0
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 1.2e-56 223.4 148 77.0
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 1.2e-56 223.4 148 76.4
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 1.5e-56 223.0 148 76.4
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 2.0e-56 222.6 148 77.7
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 2.0e-56 222.6 148 77.0
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 2.0e-56 222.6 148 75.7
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 2.0e-56 222.6 146 78.8
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 2.0e-56 222.6 148 77.7
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 2.6e-56 222.2 148 76.4
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 2.6e-56 222.2 148 76.4
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 3.4e-56 221.9 148 77.7
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 4.4e-56 221.5 148 75.7
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 4.4e-56 221.5 150 78.7
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 5.8e-56 221.1 148 78.4
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 7.6e-56 220.7 148 76.4
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 7.6e-56 220.7 148 77.7
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 7.6e-56 220.7 148 77.7
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 7.6e-56 220.7 148 78.4
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 9.9e-56 220.3 148 77.0
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 1.3e-55 219.9 148 76.4
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 1.7e-55 219.5 148 79.1
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 2.2e-55 219.2 148 76.4
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 2.2e-55 219.2 148 77.0
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 2.2e-55 219.2 148 76.4
Atru.chr5.3350 Acer truncatum HOM05D003564 ORTHO05D005332 3.8e-55 218.4 148 76.4
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 4.9e-55 218.0 148 75.7
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 4.9e-55 218.0 148 75.7
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 4.9e-55 218.0 148 76.4
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 4.9e-55 218.0 148 76.4
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 4.9e-55 218.0 148 76.4
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 6.4e-55 217.6 148 77.0
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 8.4e-55 217.2 148 75.7
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 8.4e-55 217.2 148 75.0
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 8.4e-55 217.2 148 77.0
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.1e-54 216.9 148 75.7
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 1.1e-54 216.9 148 74.3
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 1.4e-54 216.5 150 77.3
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.4e-54 216.5 148 76.4
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 1.4e-54 216.5 148 77.0
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 1.4e-54 216.5 148 74.3
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 1.4e-54 216.5 148 75.0
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 1.4e-54 216.5 148 75.7
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 1.9e-54 216.1 148 76.4
Cc03_g00640 Coffea canephora HOM05D003564 ORTHO05D005332 3.2e-54 215.3 150 75.3
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 4.1e-54 214.9 148 75.7
PSO761G0547 Papaver somniferum HOM05D003564 ORTHO05D005332 4.1e-54 214.9 149 71.8
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 4.1e-54 214.9 148 73.6
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 5.4e-54 214.5 148 73.6
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 5.4e-54 214.5 148 75.0
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 5.4e-54 214.5 148 76.4
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 7.1e-54 214.2 149 75.8
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 9.2e-54 213.8 148 75.0
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 9.2e-54 213.8 148 76.4
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 9.2e-54 213.8 148 74.3
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 1.6e-53 213.0 148 75.7
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 1.6e-53 213.0 148 74.3
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 2.1e-53 212.6 148 76.4
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 2.7e-53 212.2 148 74.3
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 2.7e-53 212.2 148 75.0
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 2.7e-53 212.2 148 75.0
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 3.5e-53 211.8 148 77.0
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 3.5e-53 211.8 148 74.3
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 4.6e-53 211.5 148 74.3
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 7.8e-53 210.7 148 73.6
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 1.3e-52 209.9 148 73.6
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 3.9e-52 208.4 148 73.6
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 5.1e-52 208.0 148 73.6
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 1.5e-51 206.5 148 70.9
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 1.5e-51 206.5 148 73.6
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 1.5e-51 206.5 148 74.3
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 1.9e-51 206.1 148 71.6
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 2.5e-51 205.7 148 73.0
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 3.3e-51 205.3 148 72.3
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 3.3e-51 205.3 148 72.3
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 3.3e-51 205.3 148 73.0
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 7.3e-51 204.1 148 73.6
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 7.3e-51 204.1 148 73.0
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 9.6e-51 203.8 148 72.3
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 1.2e-50 203.4 148 72.3
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 1.6e-50 203.0 148 70.3
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 2.1e-50 202.6 148 71.6
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 2.1e-50 202.6 148 71.6
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 3.6e-50 201.8 148 72.3
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.1e-49 200.3 179 62.6
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 1.4e-49 199.9 148 70.3
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 1.4e-49 199.9 148 71.6
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 2.4e-49 199.1 148 69.6
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 2.4e-49 199.1 148 68.2
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 6.9e-49 197.6 148 70.3
SHI00111 Sapria himalayana HOM05D003564 ORTHO05D005332 1.2e-48 196.8 148 65.5
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 1.5e-48 196.4 148 70.3
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 2.0e-48 196.1 148 69.6
PSO673G0028 Papaver somniferum HOM05D003564 ORTHO05D015539 5.8e-48 194.5 144 67.4
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 1.7e-47 193.0 199 56.3
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 9.3e-46 187.2 146 68.5
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 1.2e-45 186.8 148 68.9
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 2.7e-45 185.7 127 74.8
Glyma.08G358766 Glycine max HOM05D003564 ORTHO05D015539 7.8e-45 184.1 148 66.2
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 4.0e-41 171.8 148 60.8
CAN.G311.69 Capsicum annuum HOM05D003564 ORTHO05D005332 2.6e-40 169.1 104 82.7
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 7.6e-40 167.5 148 59.5
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 3.8e-39 165.2 104 81.7
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 6.4e-39 164.5 148 58.8
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 3.2e-38 162.2 148 55.4
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 2.8e-34 149.1 149 57.0
Lsat_1_v5_gn_1_7420 Lactuca sativa HOM05D003564 ORTHO05D001424 1.1e-33 147.1 116 64.7
Lsat_1_v5_gn_2_75340 Lactuca sativa HOM05D003564 ORTHO05D015539 4.0e-33 145.2 101 71.3
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 7.6e-32 141.0 146 53.4
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 7.9e-29 131.0 155 49.0
Sopen01g020110 Solanum pennellii HOM05D003564 ORTHO05D015539 1.5e-24 116.7 74 81.1
Thecc.02G173700 Theobroma cacao HOM05D003564 ORTHO05D005332 3.8e-23 112.1 65 87.7
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 2.3e-20 102.8 100 58.0
Hma1.2p1_0760F.1_g214160 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 3.0e-20 102.4 81 66.7
Hma1.2p1_0213F.1_g090610 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 1.1e-19 100.5 81 65.4
Hma1.2p1_0014F.1_g009450 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 1.5e-19 100.1 59 83.1
TAR365G0167 Trochodendron aralioides HOM05D003564 ORTHO05D024794 1.5e-19 100.1 103 55.3
Lsat_1_v5_gn_5_163121 Lactuca sativa HOM05D003564 ORTHO05D230188 7.4e-19 97.8 90 60.0
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 2.2e-18 96.3 147 41.5
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 1.1e-17 94.0 142 41.5
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 1.8e-17 93.2 139 41.0
Actinidia14250 Actinidia chinensis HOM05D003564 ORTHO05D004310 7.9e-13 77.8 58 69.0
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 7.9e-13 77.8 55 70.9
HanXRQChr14g0435401 Helianthus annuus HOM05D003564 ORTHO05D015539 3.9e-12 75.5 60 66.7


User provided reference genes

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