Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 2196.4 1137 100.0
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1845.9 1138 85.0
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1826.2 1129 84.7
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1784.6 1170 80.9
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1685.6 1205 75.6
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1675.6 1149 77.1
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1610.9 1139 74.8
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1577.0 1137 73.9
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1544.3 1154 72.6
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1541.2 1143 72.5
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1539.6 1137 72.1
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1537.3 1140 72.4
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1530.8 1128 72.6
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1524.2 1137 72.9
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1516.9 1144 72.1
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1514.2 1140 71.5
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1510.0 1141 71.7
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1508.0 1145 71.4
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1505.0 1125 72.6
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1500.7 1142 71.7
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1498.8 1140 70.7
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1498.8 1137 72.1
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1498.0 1136 70.5
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1497.3 1140 70.5
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1496.5 1138 70.5
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1495.7 1142 71.2
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1494.6 1137 71.9
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1493.8 1167 70.4
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1490.3 1140 70.5
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1488.0 1149 70.7
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1480.3 1093 73.7
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1479.5 1139 70.6
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1475.7 1138 69.6
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1472.2 1185 69.7
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1471.4 1133 69.3
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1469.1 1132 69.6
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1468.4 1136 69.4
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1468.0 1101 70.2
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1466.8 1138 69.2
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1466.1 1098 72.2
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1465.7 1101 70.2
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1465.7 1138 68.3
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1462.6 1129 69.2
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1462.2 1138 68.8
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1460.3 1152 70.5
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1458.0 1094 71.1
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1457.2 1146 68.8
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1456.0 1129 68.9
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1453.7 1140 69.0
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1449.5 1145 69.9
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1446.4 1138 68.3
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1435.6 1131 68.0
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1433.3 1132 68.6
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1430.6 1116 70.5
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1426.0 1130 68.1
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1416.4 1116 69.1
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1398.3 1108 67.9
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1390.9 1142 66.5
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1388.6 1138 66.3
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1386.3 1172 65.4
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1385.9 1138 67.0
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1385.5 1140 66.0
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1380.5 1144 65.2
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1371.7 1146 66.1
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1370.1 1146 65.2
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1362.8 1144 65.2
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1360.1 1316 60.6
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1357.4 1142 64.6
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1355.9 1148 64.5
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1346.3 1146 64.0
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1337.8 1148 63.9
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1337.4 1152 63.1
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1330.5 1146 63.9
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1329.3 1096 64.9
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1327.0 1147 63.4
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1319.3 1096 64.7
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1316.2 1153 63.1
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1315.1 1132 63.6
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1315.1 1091 65.1
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1300.8 1096 64.1
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1297.7 1098 63.8
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1292.3 1094 64.6
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1291.6 1097 63.7
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1288.1 1096 63.9
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1266.9 1095 63.9
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1261.9 1017 68.6
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1252.3 1390 55.3
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1209.1 1157 60.3
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1204.9 946 69.0
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1203.7 1112 59.2
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1199.5 946 68.8
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1193.3 1114 60.8
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1175.6 1105 57.9
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1157.5 1153 59.1
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 0.0e+00 1148.3 932 68.9
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1140.6 952 64.7
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1130.9 969 65.8
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1123.6 1087 59.2
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1106.7 1024 61.5
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 0.0e+00 1079.7 921 68.2
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 9.1e-303 1043.9 1025 59.4
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.1e-295 1020.4 1049 57.8
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 6.6e-277 958.0 1003 58.2
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 3.4e-273 945.7 802 66.7
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 6.6e-253 878.2 903 59.2
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 2.1e-246 856.7 723 65.4
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.2e-238 830.9 709 63.3
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 2.2e-232 810.1 799 59.8
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 2.2e-232 810.1 1136 42.4
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.1e-230 803.5 1140 42.9
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 3.3e-228 796.2 1113 42.6
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 9.0e-226 788.1 1133 41.4
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.2e-222 777.7 1132 41.7
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 3.4e-217 759.6 911 52.1
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 7.7e-209 731.9 654 63.6
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.0e-201 707.2 525 69.1
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.8e-194 684.1 525 69.3
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.2e-190 671.4 1060 38.6
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 2.3e-173 614.0 523 63.3
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 9.8e-164 582.0 425 73.2
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.4e-162 578.2 434 71.7
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 6.4e-155 552.7 492 62.0
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 2.1e-150 537.7 407 72.7
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.9e-122 444.9 344 68.0
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.4e-122 444.5 356 70.8
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 4.0e-109 400.6 227 85.9
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 2.9e-107 394.4 371 59.6
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 7.9e-105 386.3 669 40.7
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 2.7e-97 361.3 826 32.4
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 2.8e-94 351.3 351 54.4
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 6.5e-91 340.1 185 84.9
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 2.1e-73 282.0 514 39.3
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 2.7e-73 281.6 242 67.4
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 3.7e-70 271.2 1098 25.4
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 2.2e-67 261.9 190 72.1
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 5.0e-67 260.8 206 62.1
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 6.5e-67 260.4 140 88.6
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 6.8e-64 250.4 140 87.9
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 8.8e-64 250.0 246 54.9
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.0e-63 248.8 145 82.8
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.7e-62 245.7 1290 22.2
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 1.0e-59 236.5 255 51.4
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 3.1e-53 214.9 123 85.4
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 7.0e-53 213.8 125 82.4
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.2e-49 203.0 141 80.1
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.1e-49 202.2 121 81.8
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 7.5e-47 193.7 208 60.6
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 9.8e-47 193.4 168 66.1
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 9.8e-47 193.4 168 66.1
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.9e-46 191.0 546 32.4
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.6e-44 186.0 133 78.9
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.5e-42 179.5 140 68.6
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 1.9e-42 179.1 139 73.4
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 4.7e-41 174.5 123 67.5
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.1e-37 163.3 162 63.0
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.6e-36 159.5 1178 21.1
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 2.7e-36 158.7 85 88.2
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 3.0e-35 155.2 119 71.4
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.1e-34 153.3 82 85.4
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 2.5e-34 152.1 82 85.4
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.2e-33 149.8 161 52.8
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 3.6e-33 148.3 112 72.3
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.4e-29 136.3 150 49.3
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 3.2e-29 135.2 117 58.1
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.6e-28 132.9 134 52.2
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 6.6e-27 127.5 88 79.5
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.9e-26 125.9 112 61.6
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 5.6e-26 124.4 132 59.8
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.8e-23 114.4 102 57.8
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.9e-21 109.4 85 63.5
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 8.6e-19 100.5 84 58.3
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 4.7e-17 94.7 95 54.7
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 2.7e-12 79.0 77 58.4
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 6.6e-11 74.3 59 69.5
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.2e-07 63.5 43 67.4
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 3.4e-07 62.0 45 64.4


User provided reference genes

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