Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.3e-58 228.0 106 100.0
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.3e-46 189.5 100 88.0
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 2.9e-46 188.3 90 96.7
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.1e-45 186.4 90 94.4
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.1e-45 186.4 90 94.4
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.1e-45 186.4 90 94.4
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.5e-45 186.0 90 95.6
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 2.5e-45 185.3 90 95.6
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 2.5e-45 185.3 90 91.1
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 3.2e-45 184.9 90 94.4
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 9.5e-45 183.3 90 93.3
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 2.1e-44 182.2 90 92.2
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 2.1e-44 182.2 90 91.1
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 2.1e-44 182.2 90 92.2
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 3.6e-44 181.4 90 91.1
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 3.6e-44 181.4 90 91.1
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 3.6e-44 181.4 90 92.2
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 4.7e-44 181.0 90 90.0
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 4.7e-44 181.0 90 91.1
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.7e-44 181.0 90 91.1
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 4.7e-44 181.0 90 92.2
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 6.1e-44 180.6 90 91.1
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 6.1e-44 180.6 90 91.1
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 8.0e-44 180.3 90 91.1
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.0e-44 180.3 90 90.0
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.0e-44 180.3 90 90.0
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.0e-43 179.9 90 91.1
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.0e-43 179.9 90 91.1
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.4e-43 179.5 90 90.0
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.4e-43 179.5 90 91.1
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.4e-43 179.5 102 85.3
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.8e-43 179.1 90 87.8
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 1.8e-43 179.1 90 88.9
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 1.8e-43 179.1 90 91.1
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 1.8e-43 179.1 90 91.1
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.8e-43 179.1 90 88.9
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 1.8e-43 179.1 90 87.8
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.8e-43 179.1 90 88.9
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.3e-43 178.7 90 87.8
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 3.0e-43 178.3 90 88.9
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 3.0e-43 178.3 90 88.9
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 3.0e-43 178.3 90 88.9
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 3.0e-43 178.3 90 87.8
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.0e-43 178.3 90 88.9
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 4.0e-43 177.9 90 88.9
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 4.0e-43 177.9 90 88.9
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 4.0e-43 177.9 90 88.9
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 4.0e-43 177.9 90 87.8
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 5.2e-43 177.6 90 87.8
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 5.2e-43 177.6 90 88.9
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 5.2e-43 177.6 90 88.9
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 6.8e-43 177.2 90 86.7
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 6.8e-43 177.2 90 86.7
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 6.8e-43 177.2 90 86.7
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 6.8e-43 177.2 90 87.8
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 6.8e-43 177.2 90 87.8
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.8e-43 177.2 90 90.0
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.8e-43 177.2 90 90.0
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.8e-43 177.2 90 90.0
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 6.8e-43 177.2 91 90.1
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 6.8e-43 177.2 91 90.1
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 91.1
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 86.7
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 86.7
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 86.7
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 86.7
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 86.7
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 88.9
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 88.9
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 88.9
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 88.9
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 88.9
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 88.9
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 86.7
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 88.9
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 88.9
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 88.9
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 88.9
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 8.8e-43 176.8 90 86.7
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.2e-42 176.4 90 87.8
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.2e-42 176.4 90 86.7
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 1.2e-42 176.4 90 87.8
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.2e-42 176.4 90 90.0
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.2e-42 176.4 90 87.8
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.2e-42 176.4 90 87.8
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.5e-42 176.0 90 88.9
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.5e-42 176.0 90 87.8
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.0e-42 175.6 90 85.6
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 2.0e-42 175.6 90 85.6
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 2.0e-42 175.6 90 85.6
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 2.0e-42 175.6 90 85.6
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.0e-42 175.6 90 86.7
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 2.6e-42 175.3 90 86.7
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 2.6e-42 175.3 90 86.7
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 2.6e-42 175.3 90 86.7
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 2.6e-42 175.3 90 88.9
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 2.6e-42 175.3 90 87.8
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 2.6e-42 175.3 90 87.8
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 2.6e-42 175.3 90 86.7
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 3.4e-42 174.9 90 85.6
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 3.4e-42 174.9 90 85.6
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 3.4e-42 174.9 90 84.4
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 3.4e-42 174.9 90 85.6
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 3.4e-42 174.9 90 85.6
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 4.4e-42 174.5 90 85.6
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 4.4e-42 174.5 90 85.6
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 4.4e-42 174.5 90 88.9
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 4.4e-42 174.5 90 87.8
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 4.4e-42 174.5 90 87.8
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 4.4e-42 174.5 90 87.8
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 4.4e-42 174.5 90 85.6
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 5.7e-42 174.1 90 87.8
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 5.7e-42 174.1 90 84.4
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 5.7e-42 174.1 90 86.7
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 5.7e-42 174.1 90 87.8
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 5.7e-42 174.1 90 86.7
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 5.7e-42 174.1 90 85.6
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 7.5e-42 173.7 90 87.8
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 7.5e-42 173.7 90 87.8
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 7.5e-42 173.7 90 87.8
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 9.8e-42 173.3 90 87.8
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 9.8e-42 173.3 90 85.6
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 9.8e-42 173.3 90 88.9
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 9.8e-42 173.3 90 88.9
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 1.3e-41 172.9 90 86.7
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 1.7e-41 172.6 90 87.8
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 2.2e-41 172.2 90 85.6
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 4.9e-41 171.0 90 85.6
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 4.9e-41 171.0 90 85.6
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 4.9e-41 171.0 98 81.6
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 6.3e-41 170.6 90 84.4
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.3e-41 170.2 87 88.5
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.4e-40 168.7 90 86.7
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.4e-40 167.5 90 86.7
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 5.4e-40 167.5 90 83.3
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.4e-40 167.5 108 72.2
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 7.0e-40 167.2 90 82.2
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.2e-39 166.4 110 72.7
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 2.0e-39 165.6 87 86.2
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 2.7e-39 165.2 90 83.3
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.5e-39 164.5 87 86.2
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 5.9e-39 164.1 90 81.1
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.0e-38 163.3 90 81.1
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.3e-38 162.9 87 85.1
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.3e-38 162.9 87 85.1
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.3e-38 162.9 87 85.1
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 6.6e-38 160.6 76 96.1
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 1.5e-37 159.5 90 78.9
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 3.3e-37 158.3 103 72.8
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 3.6e-36 154.8 90 75.6
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 4.7e-36 154.5 90 78.9
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.0e-35 151.8 87 82.8
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.8e-32 142.5 79 82.3
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.6e-31 139.4 90 72.2
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.0e-30 135.2 91 73.6
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 3.3e-29 131.7 65 89.2
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 4.3e-29 131.3 96 58.3
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 7.3e-29 130.6 65 87.7
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.2e-28 129.8 65 87.7
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 7.5e-26 120.6 65 80.0
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-24 116.7 62 83.9
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-24 116.7 62 83.9
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-24 116.7 62 83.9
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-24 116.7 62 83.9
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-24 116.7 62 83.9
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.1e-24 116.7 62 83.9
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 8.6e-22 107.1 90 55.6
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 5.2e-19 97.8 47 87.2
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 9.8e-18 93.6 46 87.0
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.9e-17 92.0 46 82.6
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 6.4e-17 90.9 46 93.5
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 6.4e-17 90.9 46 93.5
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.1e-16 90.1 45 88.9
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 1.4e-16 89.7 44 84.1
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 7.1e-16 87.4 48 77.1
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 1.2e-15 86.7 46 87.0
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.7e-15 85.5 44 88.6
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.3e-14 83.2 44 88.6
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.3e-14 82.4 52 73.1
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.3e-14 82.4 60 66.7


User provided reference genes

Program Settings