Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.4e-224 782.7 428 100.0
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 6.6e-222 773.9 440 97.3
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 2.2e-148 529.6 408 68.4
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.1e-143 513.1 401 66.8
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 9.5e-136 487.6 398 64.8
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.0e-134 484.2 391 65.7
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 3.5e-130 469.2 357 68.6
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 3.1e-126 456.1 392 59.9
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 7.5e-125 451.4 393 61.1
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.1e-123 447.6 394 59.9
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 3.9e-121 439.1 396 59.1
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 8.6e-121 438.0 514 52.9
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 9.5e-120 434.5 404 57.4
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.1e-118 431.0 396 58.3
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 8.9e-118 427.9 396 57.6
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.2e-117 427.6 395 57.2
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 2.6e-117 426.4 396 57.6
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 4.4e-117 425.6 396 57.3
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.1e-115 421.0 397 57.9
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 5.4e-115 418.7 390 57.9
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 6.6e-113 411.8 393 54.7
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 6.6e-113 411.8 398 54.5
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 1.1e-112 411.0 392 55.9
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 4.7e-111 405.6 399 54.9
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 6.2e-111 405.2 392 55.1
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 3.4e-109 399.4 383 54.6
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 4.4e-109 399.1 390 55.6
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 5.8e-109 398.7 416 51.7
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 9.9e-109 397.9 392 56.4
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.3e-108 397.5 398 55.3
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.7e-108 397.1 397 54.4
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 2.9e-108 396.4 433 51.7
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.1e-107 394.4 394 54.1
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 5.4e-107 392.1 405 56.0
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 5.4e-107 392.1 394 54.3
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 9.2e-107 391.3 417 52.3
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.6e-106 390.6 417 53.0
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.6e-106 390.6 391 53.7
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 7.8e-106 388.3 372 56.2
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 1.3e-105 387.5 393 54.7
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 3.0e-105 386.3 406 52.7
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 6.6e-105 385.2 423 51.8
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 2.5e-104 383.3 393 51.4
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 2.1e-103 380.2 415 49.9
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 4.7e-103 379.0 393 53.9
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 8.1e-103 378.3 389 52.7
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 6.8e-102 375.2 393 52.4
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 8.9e-102 374.8 391 49.6
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 2.0e-101 373.6 392 52.3
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 7.6e-101 371.7 428 47.9
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 7.6e-101 371.7 398 51.8
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.3e-100 370.9 390 51.8
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 2.9e-100 369.8 388 52.1
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 4.9e-100 369.0 388 51.3
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 3.2e-99 366.3 393 52.2
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 4.2e-99 365.9 393 50.1
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 1.6e-98 364.0 391 50.9
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.1e-98 363.6 391 51.9
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.6e-98 362.5 411 50.9
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 7.8e-98 361.7 382 52.1
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-97 360.9 391 51.4
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 8.7e-97 358.2 391 51.4
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.5e-96 357.5 391 50.9
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 3.3e-96 356.3 409 48.2
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 5.6e-96 355.5 401 47.6
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 5.6e-96 355.5 403 48.6
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 7.3e-96 355.1 317 60.3
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.3e-95 354.4 409 48.2
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 6.2e-95 352.1 409 47.9
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 9.0e-94 348.2 396 49.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 2.6e-93 346.7 379 50.4
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 5.8e-93 345.5 396 49.2
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-92 344.4 427 47.1
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.2e-92 343.6 391 50.1
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 3.8e-92 342.8 389 46.0
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 3.2e-91 339.7 397 47.4
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.2e-91 339.7 394 47.5
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 7.1e-91 338.6 394 47.2
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.6e-90 337.4 408 46.3
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 1.6e-90 337.4 388 50.8
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.7e-90 336.7 391 49.1
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 5.1e-89 332.4 385 49.1
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 6.6e-89 332.0 392 45.2
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 3.3e-88 329.7 394 46.2
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 9.6e-88 328.2 392 45.7
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 9.6e-88 328.2 604 35.1
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 1.6e-87 327.4 394 45.9
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 2.8e-87 326.6 392 45.2
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 8.1e-87 325.1 395 49.9
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.0e-86 322.8 353 52.1
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 6.9e-86 322.0 392 45.9
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 4.5e-85 319.3 392 46.2
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 1.7e-84 317.4 392 46.4
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 4.9e-84 315.8 393 43.5
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 6.4e-84 315.5 380 48.2
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 8.4e-84 315.1 394 44.7
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 4.2e-83 312.8 391 45.3
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 7.1e-83 312.0 394 45.4
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 3.5e-82 309.7 390 44.6
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 3.5e-82 309.7 394 45.2
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 4.6e-82 309.3 387 43.4
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 4.6e-82 309.3 387 43.4
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 4.6e-82 309.3 387 43.4
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 6.0e-82 308.9 387 43.7
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 6.0e-82 308.9 406 42.1
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 6.0e-82 308.9 417 42.4
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 7.9e-82 308.5 387 43.7
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 6.7e-81 305.4 391 44.5
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 2.6e-77 293.5 389 44.2
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.3e-73 280.4 389 44.7
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.7e-68 264.2 420 41.2
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 2.2e-68 263.8 305 46.6
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.7e-66 256.9 379 43.0
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 4.6e-66 256.1 400 40.8
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 3.7e-55 219.9 391 36.8
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 2.6e-53 213.8 292 45.2
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.7e-52 211.1 238 51.3
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 2.9e-52 210.3 245 47.3
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 1.4e-49 201.4 395 36.7
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 7.4e-48 195.7 281 42.3
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 9.7e-48 195.3 218 46.3
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 4.5e-45 186.4 419 34.8
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 6.5e-44 182.6 308 38.6
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.6e-42 176.8 197 47.2
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 6.1e-42 176.0 360 35.0
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 3.9e-41 173.3 443 32.1
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 9.7e-40 168.7 399 31.8
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 5.0e-36 156.4 225 41.8
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.0e-36 156.4 246 40.2
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 8.5e-36 155.6 134 58.2
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.1e-34 151.0 370 33.8
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 2.0e-32 144.4 295 36.3
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.0e-32 144.4 306 36.6
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.6e-32 144.1 382 34.6
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 9.8e-32 142.1 383 34.2
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.4e-30 136.3 376 31.1
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.2e-29 135.2 155 52.9
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 7.7e-29 132.5 109 60.6
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 7.2e-27 125.9 107 57.0
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-25 122.1 232 36.6
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.4e-25 121.7 140 50.0
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 2.3e-20 104.4 148 39.9
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 2.9e-20 104.0 332 29.8
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 6.6e-20 102.8 125 44.8
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 7.2e-19 99.4 130 40.8
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.2e-18 98.6 92 57.6
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 8.0e-18 95.9 146 42.5
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 1.0e-17 95.5 454 23.8
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.4e-17 95.1 190 33.7
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.2e-15 87.8 97 47.4
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 2.9e-12 77.4 89 42.7
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 9.5e-11 72.4 138 34.1
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 4.4e-08 63.5 126 35.7
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 1.7e-07 61.6 122 36.1
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 1.7e-07 61.6 122 36.1
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 5.4e-06 56.6 98 35.7


User provided reference genes

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